Tan0014149 (gene) Snake gourd v1

Overview


Name	Tan0014149
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	VQ motif-containing protein
Location	LG04: 10781022 .. 10781294 (+)
RNA-Seq Expression	Tan0014149
Synteny	Tan0014149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCGATTATGAACAATCAAGCTCTGTTGCCCAACTCCGCTCGTTCGGCGGCCATGGCTGTCCATAGATCTTCACACGCCATTTCCAAGCCCAAACTCAAAATTCGTATAATTCATATCTTCGTGCCGGAGATCATCAAAACCAACGTCGCCAATTTCTGCGAGCTCGTTCAGAGGCTCATCGGAAAGCCGAAGGCGGCGGCGAAGACGATGATTGATTCCGAAGAAATTCCCGTGGAGACGGAGGCGGCGGCGCGTGCCGGAGGGTGA

mRNA sequence

ATGGACGCGATTATGAACAATCAAGCTCTGTTGCCCAACTCCGCTCGTTCGGCGGCCATGGCTGTCCATAGATCTTCACACGCCATTTCCAAGCCCAAACTCAAAATTCGTATAATTCATATCTTCGTGCCGGAGATCATCAAAACCAACGTCGCCAATTTCTGCGAGCTCGTTCAGAGGCTCATCGGAAAGCCGAAGGCGGCGGCGAAGACGATGATTGATTCCGAAGAAATTCCCGTGGAGACGGAGGCGGCGGCGCGTGCCGGAGGGTGA

Coding sequence (CDS)

ATGGACGCGATTATGAACAATCAAGCTCTGTTGCCCAACTCCGCTCGTTCGGCGGCCATGGCTGTCCATAGATCTTCACACGCCATTTCCAAGCCCAAACTCAAAATTCGTATAATTCATATCTTCGTGCCGGAGATCATCAAAACCAACGTCGCCAATTTCTGCGAGCTCGTTCAGAGGCTCATCGGAAAGCCGAAGGCGGCGGCGAAGACGATGATTGATTCCGAAGAAATTCCCGTGGAGACGGAGGCGGCGGCGCGTGCCGGAGGGTGA

Protein sequence

MDAIMNNQALLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQRLIGKPKAAAKTMIDSEEIPVETEAAARAGG

Homology

[Close]

BLAST of Tan0014149 vs. ExPASy Swiss-Prot
Match: Q9M2P8 (VQ motif-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=VQ25 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-10
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 18 AAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQRLIGKP 66
          +++AVH+ S++I+K K KIRIIHIF PEIIKT+VANF ELVQ L GKP
Sbjct: 14 SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSLTGKP 61

[Close]

BLAST of Tan0014149 vs. ExPASy Swiss-Prot
Match: O64868 (VQ motif-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=VQ18 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 17 SAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQRLIGKP--------KAA 76
          S+ ++++R+S  ISK K KIRIIHIF PE+IKT+V NF  LVQ L GKP        K  
Sbjct: 14 SSRVSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAKTGKKR 73

Query: 77 AKTMIDSEEIPV 81
          AK+ I + + PV
Sbjct: 74 AKSRITTPQEPV 85

[Close]

BLAST of Tan0014149 vs. ExPASy Swiss-Prot
Match: O48522 (VQ motif-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=VQ17 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-08
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 20 MAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQRLIGK 65
          +A+H+ S  ++K K KIRIIHIF PEIIKT+VANF E+VQ L GK
Sbjct: 17 IAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGK 61

[Close]

BLAST of Tan0014149 vs. NCBI nr
Match: XP_022935342.1 (VQ motif-containing protein 25-like [Cucurbita moschata])

HSP 1 Score: 100.5 bits (249), Expect = 7.7e-18
Identity = 57/88 (64.77%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  +ALL NSAR AAMAVH +SHAISKPK KIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRALLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAAAKTMIDSEEIPVETEAAARA 89
          L GKP  A + ++  +  PV     A A
Sbjct: 61 LTGKPATAEEKIVPPQIPPVAVADIATA 88

[Close]

BLAST of Tan0014149 vs. NCBI nr
Match: XP_023528893.1 (VQ motif-containing protein 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  + LL NSAR AAMAVH +SHAISKPK KIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRTLLQNSARPAAMAVHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAAAKTMIDSEEIPV 81
          L GKP  A + ++  +  PV
Sbjct: 61 LTGKPATAEEKIVPPQIPPV 80

[Close]

BLAST of Tan0014149 vs. NCBI nr
Match: KAG7017559.1 (VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-17
Identity = 56/88 (63.64%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  + LL NSAR AAMAVH +SHAISKPK KIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRTLLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAAAKTMIDSEEIPVETEAAARA 89
          L GKP  A + ++  +  PV     A A
Sbjct: 61 LTGKPATAEEKIVPPQIPPVAVADIATA 88

[Close]

BLAST of Tan0014149 vs. NCBI nr
Match: XP_038906267.1 (VQ motif-containing protein 25 [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 5.0e-17
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MDAIMNNQA--LLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELV 60
          MDAI+  Q   LLPNSA  AAMA+H +SH+ISKPK KIRIIHIF PEIIKT+VANF ELV
Sbjct: 1  MDAILKKQRRHLLPNSAHPAAMALHTASHSISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61 QRLIGKPKAAAKTMIDSEEIPVETEAAA 87
          QRL GKP A A+  I  EEI  ET A A
Sbjct: 61 QRLTGKP-ATAEEKILPEEIQPETVAVA 87

[Close]

BLAST of Tan0014149 vs. NCBI nr
Match: KAG6580809.1 (VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 6.5e-17
Identity = 55/88 (62.50%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  + LL NS R AAMAVH +SHAISKPK KIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRTLLQNSGRPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAAAKTMIDSEEIPVETEAAARA 89
          L GKP  A + ++  +  PV     A A
Sbjct: 61 LTGKPATAEEKIVPPQIPPVAVADIATA 88

[Close]

BLAST of Tan0014149 vs. ExPASy TrEMBL
Match: A0A6J1F598 (VQ motif-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442255 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.7e-18
Identity = 57/88 (64.77%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  +ALL NSAR AAMAVH +SHAISKPK KIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRALLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAAAKTMIDSEEIPVETEAAARA 89
          L GKP  A + ++  +  PV     A A
Sbjct: 61 LTGKPATAEEKIVPPQIPPVAVADIATA 88

[Close]

BLAST of Tan0014149 vs. ExPASy TrEMBL
Match: A0A6J1IYE1 (VQ motif-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111481765 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.4e-17
Identity = 54/88 (61.36%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  +ALL NSAR  AMA+H +SHAISKPK KIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRALLQNSARPGAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAAAKTMIDSEEIPVETEAAARA 89
          L GKP  A + ++  +  P      A A
Sbjct: 61 LTGKPATAEEKIVPPQIPPAAVADVATA 88

[Close]

BLAST of Tan0014149 vs. ExPASy TrEMBL
Match: A0A5A7TRB0 (VQ motif-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005450 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-15
Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1  MDAIMNNQA----LLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCE 60
          MDAI+ NQ     LLP S R + M +H +SHAISKPK KIRIIHIF PEIIKT+VANF E
Sbjct: 1  MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61 LVQRLIGKPKAAAKTMIDSEEIPVETEAAA 87
          LVQRL GKP+A   T  + + +P +  AAA
Sbjct: 61 LVQRLTGKPEAI--TTQEDKILPPQIPAAA 88

[Close]

BLAST of Tan0014149 vs. ExPASy TrEMBL
Match: A0A1S3B6P9 (VQ motif-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103486769 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-15
Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1  MDAIMNNQA----LLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCE 60
          MDAI+ NQ     LLP S R + M +H +SHAISKPK KIRIIHIF PEIIKT+VANF E
Sbjct: 1  MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61 LVQRLIGKPKAAAKTMIDSEEIPVETEAAA 87
          LVQRL GKP+A   T  + + +P +  AAA
Sbjct: 61 LVQRLTGKPEAI--TTQEDKILPPQIPAAA 88

[Close]

BLAST of Tan0014149 vs. ExPASy TrEMBL
Match: A0A0A0LBB1 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807350 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 10 LLPNSARSAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQRLIGKPKAAA 69
          LLP SAR ++MA+H +SH ISKPK KIRIIHIF PEIIKT+VANF ELVQRL GKP+A  
Sbjct: 15 LLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPEATE 74

Query: 70 KTMIDSEEIP 80
             I   EIP
Sbjct: 75 DGKILPPEIP 84

[Close]

BLAST of Tan0014149 vs. TAIR 10
Match: AT3G58000.1 (VQ motif-containing protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 18 AAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQRLIGKP 66
          +++AVH+ S++I+K K KIRIIHIF PEIIKT+VANF ELVQ L GKP
Sbjct: 14 SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSLTGKP 61

[Close]

BLAST of Tan0014149 vs. TAIR 10
Match: AT2G44340.1 (VQ motif-containing protein )

HSP 1 Score: 60.5 bits (145), Expect = 8.2e-10
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 17 SAAMAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQRLIGKP--------KAA 76
          S+ ++++R+S  ISK K KIRIIHIF PE+IKT+V NF  LVQ L GKP        K  
Sbjct: 14 SSRVSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAKTGKKR 73

Query: 77 AKTMIDSEEIPV 81
          AK+ I + + PV
Sbjct: 74 AKSRITTPQEPV 85

[Close]

BLAST of Tan0014149 vs. TAIR 10
Match: AT2G42140.1 (VQ motif-containing protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 20 MAVHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQRLIGK 65
          +A+H+ S  ++K K KIRIIHIF PEIIKT+VANF E+VQ L GK
Sbjct: 17 IAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGK 61

[Close]

BLAST of Tan0014149 vs. TAIR 10
Match: AT3G60090.1 (VQ motif-containing protein )

HSP 1 Score: 53.9 bits (128), Expect = 7.7e-08
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 22 VHRSSHAISKPKLKIRIIHIFVPEIIKTNVANFCELVQRLIGKP---KAAAKTMIDSEEI 80
          ++++S  I+K K KIRIIHIF PEII T+V NF  LVQ L GKP   K  +K  I +   
Sbjct: 31 MNKNSQIITKIKPKIRIIHIFAPEIINTDVKNFRTLVQSLTGKPEITKTGSKKKITNTNF 90

The following BLAST results are available for this feature:

BLAST of Tan0014149 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2P8	1.6e-10	68.75	VQ motif-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=VQ25 PE=3 SV=1	[more]
O64868	1.2e-08	50.00	VQ motif-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=VQ18 PE=3 SV=1	[more]
O48522	2.0e-08	64.44	VQ motif-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=VQ17 PE=2 SV=1	[more]

BLAST of Tan0014149 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935342.1	7.7e-18	64.77	VQ motif-containing protein 25-like [Cucurbita moschata]	[more]
XP_023528893.1	1.3e-17	67.50	VQ motif-containing protein 25-like [Cucurbita pepo subsp. pepo]	[more]
KAG7017559.1	2.2e-17	63.64	VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_038906267.1	5.0e-17	68.18	VQ motif-containing protein 25 [Benincasa hispida]	[more]
KAG6580809.1	6.5e-17	62.50	VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Tan0014149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F598	3.7e-18	64.77	VQ motif-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC11144225...	[more]
A0A6J1IYE1	5.4e-17	61.36	VQ motif-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111481765 ...	[more]
A0A5A7TRB0	6.6e-15	60.00	VQ motif-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B6P9	6.6e-15	60.00	VQ motif-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103486769 PE=4...	[more]
A0A0A0LBB1	1.1e-14	68.57	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807350 PE=4 SV=...	[more]

BLAST of Tan0014149 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58000.1	1.1e-11	68.75	VQ motif-containing protein	[more]
AT2G44340.1	8.2e-10	50.00	VQ motif-containing protein	[more]
AT2G42140.1	1.4e-09	64.44	VQ motif-containing protein	[more]
AT3G60090.1	7.7e-08	50.82	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 41..64 e-value: 9.1E-5 score: 21.9
IPR039834	VQ motif-containing protein 17/25	PANTHER	PTHR33143:SF3	VQ MOTIF-CONTAINING PROTEIN 17-RELATED	coord: 6..75
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 6..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014149.1	Tan0014149.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus