Tan0014122 (gene) Snake gourd v1

Overview


Name	Tan0014122
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-type domain-containing protein
Location	LG02: 4608175 .. 4609901 (-)
RNA-Seq Expression	Tan0014122
Synteny	Tan0014122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTGAATCAGTCGAATCAAGATGAACTGATCATCAATCTTTCTTGACCATCTCAACAATTCCACTATTTTTCTTCAGATTTTTGTTCTTTTCGATCCTATTCTCTCTGATTCTCTCTGTTTCTCTTCGTTCTTGAAGATTGAACCCTTTGAAGTAAGTTTCCGGTCGCCTCCTTTTCGTTTTCGGCTTCTTTATGGAGAAATGTTCACTTTCCATTAATGGGGTTTATCTGGTTTCTCAATTTGGTAAAGATGGAATCTTTTTTTTCTTATATCTTCATTTTCTGCTCCTTTCCTGGTCGATTGTGAACTTTTTCCTTCAGTGGGTTGTTGTTCTTTATTCGGATTGATGATAGAGGAGGGTATCCATTTTCACTCAAACTGGTGTGTTTGATGATGTATTGAATGTTTTTGTTCTTGGGTTTTTAGATTGTTGAGATTTCTCCATGGTGTTCGTTATTAGTTCGCGTCTGAATTGTGAAGATTTGGAAATTGGACCCCCTTTTAGCTGTAGGGTTTGTTTTTACAGAAATCCAGTGTTGAGTGGTAGCTTTCAACCAGTGGATTATGATTCCTGTGAGAAATTGTAATTTCATATAATTTAATGGAACAAATAGAATTCTCTTCTGTTTTCCTTCACTTCAATTGGTCAGTTCTCTTGAAGTTTGCCTCCTTTTAGAGATTCTGCTTCTGCTGATTCCATTTTCTTCTTCCAGTTCATACTTTGATTGTTGAATTTTCATTAATCGGTTGCATAGTTCGTGTTCTTTCCTGATGATTTGTTCATGAAAGGTTCTTAGTTGTTTGTTAACTTTTGTTTCAGGTTTGATGTGAAGAAGAGGTTGCAGTCTGCTAGATTTTTTCTGTCTGTATCGAGTCTGAGAAGTTCAGTTCAACCACGATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCCTTAACGTGCTTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATCGTTCGTTTGATCCTTCACATTGTAGGAATCCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGATAATTCCTCAGAGTTAGGAGATTACAATTTTGGTTCCTCTTGGAGTTACATAGAGACATTTCGGAATCGATATCCAATGATTAGGTTTGATAAAGTACAGGGCTCTGAACGTCATGAACACGACTGCTCGGTCTGCTTAACTCCGTTCGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCACCTTTTTCACAGAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATGGTGCTTGTGGTGAGCGTTTCGTGTGCTAGAATCTAGTTAGGGAAAACTCATGTACAGCATACTCTTAAAGATAATCGTGAACGCGTTTTCTACCTTCTTTGTGTATGAGATTTTAAGTTTGATGTGTCTGACCGGTCTTAGAGACCAAAGTTTTGTCACTGTACATACATGTTTATGAAGTTCTATGCTTCTGGCTTGTGCCTTTAGCTTTGAGTTAATGCACTGTTACTTCACTTTCTTTGTATATGGAATTGACTGAGTATGCACTAAGTTTTTCAAGTTCTGTTTGTTTGATACTGAGATTGACCGCATGTACAGCAATTTAATAGAATTACAGTTCTTAGTGATTTTGGGGATTGTTCTGTTCAAATCTTG

mRNA sequence

CACTGAATCAGTCGAATCAAGATGAACTGATCATCAATCTTTCTTGACCATCTCAACAATTCCACTATTTTTCTTCAGATTTTTGTTCTTTTCGATCCTATTCTCTCTGATTCTCTCTGTTTCTCTTCGTTCTTGAAGATTGAACCCTTTGAAGTAAGTTTCCGGTCGCCTCCTTTTCGTTTTCGGCTTCTTTATGGAGAAATGTTCACTTTCCATTAATGGGGTTTATCTGGTTTCTCAATTTGGTTTGATGTGAAGAAGAGGTTGCAGTCTGCTAGATTTTTTCTGTCTGTATCGAGTCTGAGAAGTTCAGTTCAACCACGATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCCTTAACGTGCTTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATCGTTCGTTTGATCCTTCACATTGTAGGAATCCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGATAATTCCTCAGAGTTAGGAGATTACAATTTTGGTTCCTCTTGGAGTTACATAGAGACATTTCGGAATCGATATCCAATGATTAGGTTTGATAAAGTACAGGGCTCTGAACGTCATGAACACGACTGCTCGGTCTGCTTAACTCCGTTCGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCACCTTTTTCACAGAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATGGTGCTTGTGGTGAGCGTTTCGTGTGCTAGAATCTAGTTAGGGAAAACTCATGTACAGCATACTCTTAAAGATAATCGTGAACGCGTTTTCTACCTTCTTTGTGTATGAGATTTTAAGTTTGATGTGTCTGACCGGTCTTAGAGACCAAAGTTTTGTCACTGTACATACATGTTTATGAAGTTCTATGCTTCTGGCTTGTGCCTTTAGCTTTGAGTTAATGCACTGTTACTTCACTTTCTTTGTATATGGAATTGACTGAGTATGCACTAAGTTTTTCAAGTTCTGTTTGTTTGATACTGAGATTGACCGCATGTACAGCAATTTAATAGAATTACAGTTCTTAGTGATTTTGGGGATTGTTCTGTTCAAATCTTG

Coding sequence (CDS)

ATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCCTTAACGTGCTTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATCGTTCGTTTGATCCTTCACATTGTAGGAATCCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGATAATTCCTCAGAGTTAGGAGATTACAATTTTGGTTCCTCTTGGAGTTACATAGAGACATTTCGGAATCGATATCCAATGATTAGGTTTGATAAAGTACAGGGCTCTGAACGTCATGAACACGACTGCTCGGTCTGCTTAACTCCGTTCGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCACCTTTTTCACAGAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATGGTGCTTGTGGTGA

Protein sequence

MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSSELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHLFHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW

Homology

[Close]

BLAST of Tan0014122 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-40
Identity = 88/150 (58.67%), Postives = 113/150 (75.33%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRL----SSPSSLVPSSDSL 60
           MGLSSLP PSEG+L V+LVNTALSIS+ K IVR  L IVGI L    SSPSS+  SS++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  DNSSELGDYNFGSSWSYIETFRNRYPMIRFDKV-QGSERHEHDCSVCLTPFEPESEINHL 120
            ++SE  D+      SY+E FRNR P +RF+ + +  ++ +++CSVCL+ F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHRECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH+ CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Tan0014122 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-13
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 78  RNRYPMIRFDKVQGS-ERHEHDCSVCLTPFEPESEINHL-SCGHLFHRECLEKWLDYWNI 137
           R   P+I+F+++  S E    +C+VCL  FE E EI  L +C H+FHR CL++W+D+   
Sbjct: 72  REILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQK 131

Query: 138 TCPLCRTPLMSEE 149
           TCPLCRTP + +E
Sbjct: 132 TCPLCRTPFVPDE 144

[Close]

BLAST of Tan0014122 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.3e-11
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 98  DCSVCLTPFEPESEINHLSCGHLFHRECLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL+  +   E+  L C H+FH++CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of Tan0014122 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 92  SERHEHDCSVCLTPFEPESEINHLSCGHLFHRECLEKWLDYWNITCPLCRTPLM 146
           S+    DC VCL+  +   E+  L C H+FH++CLE WL + N  CPLCR+PL+
Sbjct: 67  SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]

BLAST of Tan0014122 vs. ExPASy Swiss-Prot
Match: Q9LY41 (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-09
Identity = 48/149 (32.21%), Postives = 75/149 (50.34%), Query Frame = 0


Query: 4   SSLPAPSEGVLNVLLV-NTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSSEL 63
           SSL +    VL ++L+    L IS+  C +   L+    R   P S   S  ++ + S  
Sbjct: 19  SSLDSLKPSVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRR 78

Query: 64  GDYNFGSSWSYIETFRNRYPMIRFDKV--QGSERHEHDCSVCLTPFEPESEINHLS-CGH 123
              +  S  +   +  +  P+ +F  V  + S  +  DC+VCL+ FEPE ++  L  C H
Sbjct: 79  FSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCH 138

Query: 124 LFHRECLEKWLDYWNITCPLCRTPLMSEE 149
            FH +C++ WL   N TCPLCR+PL + E
Sbjct: 139 AFHADCIDIWL-VSNQTCPLCRSPLFASE 166

[Close]

BLAST of Tan0014122 vs. NCBI nr
Match: KAG6572211.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011849.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 5.8e-74
Identity = 136/154 (88.31%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+FKCIVRLILHIVGIR SSPSSLVPS+DS +NSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD NFGSSWSY+E FRNRYP IRFDKVQGSER EHDCSVCLT FEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWNITCPLCRTPLMSEEEK C W
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Tan0014122 vs. NCBI nr
Match: XP_022969282.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022969284.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 287.3 bits (734), Expect = 7.6e-74
Identity = 136/154 (88.31%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+FKCIVRLILHIVGIR SSPSSLVPS+DS +NSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD NFGSSWSY+E FRNRYP IRFDKVQGSER EHDCSVCLT FEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPNIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWNITCPLCRTPLMSEEEK C W
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Tan0014122 vs. NCBI nr
Match: XP_023554631.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 135/154 (87.66%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+FKCIVRLILHI+GIR SSPSSLVPS+DS +NSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD NFGSSWSY+E FRNRYP IRFDKVQGSER EHDCSVCLT FEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWNITCPLCRTPLMSEEEK C W
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Tan0014122 vs. NCBI nr
Match: XP_022952716.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952717.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952718.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 285.4 bits (729), Expect = 2.9e-73
Identity = 134/154 (87.01%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+F+CIVRLILHI+GIR SSPSSLVPS+DS +NSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFRCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD NFGSSWSY+E FRNRYP IRFDKVQGSER EHDCSVCLT FEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWNITCPLCRTPLMSEEEK C W
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Tan0014122 vs. NCBI nr
Match: XP_038887530.1 (probable E3 ubiquitin-protein ligase XERICO isoform X1 [Benincasa hispida])

HSP 1 Score: 278.1 bits (710), Expect = 4.6e-71
Identity = 133/154 (86.36%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLNV+LVNTALSISMFKCIVRLILH++GIRLS PSSLV S+DS ++SS
Sbjct: 66  MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMIGIRLSWPSSLVSSTDSFESSS 125

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD NFGSSWSY+E FRNRY  IRFDK+QGSER EHDCSVCLT FEPESEIN LSCGHL
Sbjct: 126 ELGDSNFGSSWSYLEMFRNRYLSIRFDKIQGSERREHDCSVCLTQFEPESEINILSCGHL 185

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWNITCPLCRTPLMSEEEK C W
Sbjct: 186 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 219

[Close]

BLAST of Tan0014122 vs. ExPASy TrEMBL
Match: A0A6J1HVX6 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111468336 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.7e-74
Identity = 136/154 (88.31%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+FKCIVRLILHIVGIR SSPSSLVPS+DS +NSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD NFGSSWSY+E FRNRYP IRFDKVQGSER EHDCSVCLT FEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPNIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWNITCPLCRTPLMSEEEK C W
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Tan0014122 vs. ExPASy TrEMBL
Match: A0A6J1GLE2 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111455329 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 134/154 (87.01%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLN +L+N ALSIS+F+CIVRLILHI+GIR SSPSSLVPS+DS +NSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFRCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD NFGSSWSY+E FRNRYP IRFDKVQGSER EHDCSVCLT FEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWNITCPLCRTPLMSEEEK C W
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Tan0014122 vs. ExPASy TrEMBL
Match: A0A6J1C3G2 (probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LOC111007592 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.5e-70
Identity = 132/154 (85.71%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLNVL+VNTALSISM KCIVRLIL IVGIRLSSPSSLVPSSD ++N S
Sbjct: 1   MGLSSLPAPSEGVLNVLVVNTALSISMLKCIVRLILQIVGIRLSSPSSLVPSSDFIENPS 60

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD +FGSSWSY E FRNRYP IRFD V GS+R EHDCSVCL+ FEPESEINHLSCGHL
Sbjct: 61  ELGDSSFGSSWSYTEAFRNRYPTIRFDTVHGSKRLEHDCSVCLSQFEPESEINHLSCGHL 120

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWN TCPLCRTPLMSEEEK C W
Sbjct: 121 FHTECLEKWLDYWNSTCPLCRTPLMSEEEKLCFW 154

[Close]

BLAST of Tan0014122 vs. ExPASy TrEMBL
Match: A0A1S4E4A9 (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.2e-70
Identity = 130/154 (84.42%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLNV+LVNTALSISM KCIVRLILH+VGIRLS PSS+V S+DS +NSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD NFGSSW+Y+E FRNRYP IRFDKV+ S+  EHDCSVCLT FEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWNITCPLCRTPLMSEEEK C W
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Tan0014122 vs. ExPASy TrEMBL
Match: A0A1S3CGH9 (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.2e-70
Identity = 130/154 (84.42%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSS 60
           MGLSSLPAPSEGVLNV+LVNTALSISM KCIVRLILH+VGIRLS PSS+V S+DS +NSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHL 120
           ELGD NFGSSW+Y+E FRNRYP IRFDKV+ S+  EHDCSVCLT FEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 155
           FH ECLEKWLDYWNITCPLCRTPLMSEEEK C W
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Tan0014122 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-41
Identity = 88/150 (58.67%), Postives = 113/150 (75.33%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRL----SSPSSLVPSSDSL 60
           MGLSSLP PSEG+L V+LVNTALSIS+ K IVR  L IVGI L    SSPSS+  SS++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  DNSSELGDYNFGSSWSYIETFRNRYPMIRFDKV-QGSERHEHDCSVCLTPFEPESEINHL 120
            ++SE  D+      SY+E FRNR P +RF+ + +  ++ +++CSVCL+ F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHRECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH+ CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Tan0014122 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-41
Identity = 88/150 (58.67%), Postives = 113/150 (75.33%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRL----SSPSSLVPSSDSL 60
           MGLSSLP PSEG+L V+LVNTALSIS+ K IVR  L IVGI L    SSPSS+  SS++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  DNSSELGDYNFGSSWSYIETFRNRYPMIRFDKV-QGSERHEHDCSVCLTPFEPESEINHL 120
            ++SE  D+      SY+E FRNR P +RF+ + +  ++ +++CSVCL+ F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHRECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH+ CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Tan0014122 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-14
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 78  RNRYPMIRFDKVQGS-ERHEHDCSVCLTPFEPESEINHL-SCGHLFHRECLEKWLDYWNI 137
           R   P+I+F+++  S E    +C+VCL  FE E EI  L +C H+FHR CL++W+D+   
Sbjct: 72  REILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQK 131

Query: 138 TCPLCRTPLMSEE 149
           TCPLCRTP + +E
Sbjct: 132 TCPLCRTPFVPDE 144

[Close]

BLAST of Tan0014122 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-12
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 98  DCSVCLTPFEPESEINHLSCGHLFHRECLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL+  +   E+  L C H+FH++CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of Tan0014122 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 92  SERHEHDCSVCLTPFEPESEINHLSCGHLFHRECLEKWLDYWNITCPLCRTPLM 146
           S+    DC VCL+  +   E+  L C H+FH++CLE WL + N  CPLCR+PL+
Sbjct: 67  SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

The following BLAST results are available for this feature:

BLAST of Tan0014122 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	2.6e-40	58.67	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9XF92	4.5e-13	46.58	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9ZT50	7.3e-11	49.02	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9ZU51	1.6e-10	46.30	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9LY41	1.8e-09	32.21	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV...	[more]

BLAST of Tan0014122 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572211.1	5.8e-74	88.31	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
XP_022969282.1	7.6e-74	88.31	probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022969284.1 p...	[more]
XP_023554631.1	1.3e-73	87.66	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]	[more]
XP_022952716.1	2.9e-73	87.01	probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952717.1...	[more]
XP_038887530.1	4.6e-71	86.36	probable E3 ubiquitin-protein ligase XERICO isoform X1 [Benincasa hispida]	[more]

BLAST of Tan0014122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVX6	3.7e-74	88.31	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GLE2	1.4e-73	87.01	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1C3G2	2.5e-70	85.71	probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S4E4A9	4.2e-70	84.42	probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3CGH9	4.2e-70	84.42	probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 G...	[more]

BLAST of Tan0014122 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	1.8e-41	58.67	RING/U-box superfamily protein	[more]
AT2G04240.2	1.8e-41	58.67	RING/U-box superfamily protein	[more]
AT3G61460.1	3.2e-14	46.58	brassinosteroid-responsive RING-H2	[more]
AT1G15100.1	5.2e-12	49.02	RING-H2 finger A2A	[more]
AT2G01150.1	1.1e-11	46.30	RING-H2 finger protein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 e-value: 7.3E-6 score: 35.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 e-value: 1.5E-11 score: 44.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..141 score: 13.064645
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 69..146 e-value: 9.6E-19 score: 68.9
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..153
None	No IPR available	PANTHER	PTHR47258:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..153
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 90..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014122.1	Tan0014122.1	mRNA
Tan0014122.2	Tan0014122.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane