Tan0014113 (gene) Snake gourd v1

Overview


Name	Tan0014113
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	LG07: 6883861 .. 6885019 (+)
RNA-Seq Expression	Tan0014113
Synteny	Tan0014113

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCAAAACACAGTTACAAAGAATCAAGAAAGATGGTCTATCAGTCAGTCAATACTTAGCCCAAATTAAGGATGTCACTGATAAATTCTCTGCGATTGGTGAACCTATATCCTATAGAGATCATTTAGCTCACATCCTTGATGGTTTAGGTAGTGAATATAATGTTTTTGTCACTACAATCCAAAATCGATCTGATAATCCTGCTTTGGAAGATGTTAGAAGCTTGTTGTTGGCCTATGAAGCTCGTTTAGAGCGACAGACTGCTGTTGAACAACTAAATTTGGCTCAAGCTAACCTCAGTAGTCTCACCATTCAACACAACAGTCGAAAACCCTCTCATAAACCATTCTCTCATTATTCCCCTAGACCCTCTCCTTCCTCTCAACCACCACAACCTCCTCACCTTGTCTCTTCCTACAGTCCTAGTATTCTTGGCAAGCCCCACACACCTCCTCAAAAATGGTCTTCCAGACCCTCTTCCTCTCGTCCCCAATGCCAAATTTGTGGTAAATTTGGGCACACTGCTCTAATTTGTCACCATAGGACAAACTTGGCCTATCAGACTCCCCCTCCTCAAGCCTTTCTTCATACCACACAACCCCAACAATCTTCCCCTTCTTCGTTGGATACCACATCTGTCTTTACCCTGGACAATTCTCATCCTGATGAAAACTGGTTTTTAGACTCCGGTGCTACACATCACATGACTCCGGATGCTTCTTCTCTTTGCAATCCTACGCCCTATCTTGGTGGTGACCAAGTTGTGGTTGGAAATGGTAAGTCTATCTCCATTTCTCATATTGGGAACTATTCTTTTTCATCTTCTCCTAATCCAATTTTATTGCACAATATTTTGCATACCCCTGCTATTTCAAAGAAACTCATTAGTGTTGCTCGATTGTGTCATGATAATAAAGCTTACGTTGAATTCTACTCTTCTTTCTTTCTTGTCAAGGACCTTGTTGTGCAAAAACTCACTACGCAAGCATACGCAATCGTACGTAGTAATTGATGAACAAGGTCGATCCCACAGGGACTAATGTTTGCAAAAGATTGAGAAGATGAGTAATACTAAACTAGACTTTAGGCACTTAAACAACTCAAAAGCAACAAAAATGAGCTTAGCAAAAGAGATACTAAATCTAGCTATCTAA

mRNA sequence

ATGGGTCTCAAAACACAGTTACAAAGAATCAAGAAAGATGGTCTATCAGTCAGTCAATACTTAGCCCAAATTAAGGATGTCACTGATAAATTCTCTGCGATTGGTGAACCTATATCCTATAGAGATCATTTAGCTCACATCCTTGATGGTTTAGGTAGTGAATATAATGTTTTTGTCACTACAATCCAAAATCGATCTGATAATCCTGCTTTGGAAGATGTTAGAAGCTTGTTGTTGGCCTATGAAGCTCGTTTAGAGCGACAGACTGCTGTTGAACAACTAAATTTGGCTCAAGCTAACCTCAGTAGTCTCACCATTCAACACAACATATTCTTGGCAAGCCCCACACACCTCCTCAAAAATGGTCTTCCAGACCCTCTTCCTCTCGTCCCCAATGCCAAATTTGTGATTGAGAAGATGAGTAATACTAAACTAGACTTTAGGCACTTAAACAACTCAAAAGCAACAAAAATGAGCTTAGCAAAAGAGATACTAAATCTAGCTATCTAA

Coding sequence (CDS)

ATGGGTCTCAAAACACAGTTACAAAGAATCAAGAAAGATGGTCTATCAGTCAGTCAATACTTAGCCCAAATTAAGGATGTCACTGATAAATTCTCTGCGATTGGTGAACCTATATCCTATAGAGATCATTTAGCTCACATCCTTGATGGTTTAGGTAGTGAATATAATGTTTTTGTCACTACAATCCAAAATCGATCTGATAATCCTGCTTTGGAAGATGTTAGAAGCTTGTTGTTGGCCTATGAAGCTCGTTTAGAGCGACAGACTGCTGTTGAACAACTAAATTTGGCTCAAGCTAACCTCAGTAGTCTCACCATTCAACACAACATATTCTTGGCAAGCCCCACACACCTCCTCAAAAATGGTCTTCCAGACCCTCTTCCTCTCGTCCCCAATGCCAAATTTGTGATTGAGAAGATGAGTAATACTAAACTAGACTTTAGGCACTTAAACAACTCAAAAGCAACAAAAATGAGCTTAGCAAAAGAGATACTAAATCTAGCTATCTAA

Protein sequence

MGLKTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVTTIQNRSDNPALEDVRSLLLAYEARLERQTAVEQLNLAQANLSSLTIQHNIFLASPTHLLKNGLPDPLPLVPNAKFVIEKMSNTKLDFRHLNNSKATKMSLAKEILNLAI

Homology

[Close]

BLAST of Tan0014113 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-39
Identity = 84/131 (64.12%), Postives = 105/131 (80.15%), Query Frame = 0


Query: 1   MGLKTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVT 60
           MGLKT+LQ ++KDG SVSQYLA+IK++ DKF+A+GEP+SYRDHLAH+LDGLGSEYN FVT
Sbjct: 133 MGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEYNAFVT 192

Query: 61  TIQNRSDNPALEDVRSLLLAYEARLERQTAVEQLNLAQANLSSLTIQHNIFLASPTHLLK 120
           +I NR+D+P+LEDVRSLLLAYEARL++Q  V+QLN+AQANL +L++QHN     P     
Sbjct: 193 SIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNSKRPPPKFSFP 252

Query: 121 NGLPDPLPLVP 132
           N      P  P
Sbjct: 253 NHYKHSFPNSP 263

[Close]

BLAST of Tan0014113 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 155.6 bits (392), Expect = 3.8e-34
Identity = 76/109 (69.72%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MGLKTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVT 60
           M LK +LQ+I+KD LS+SQYL+QIKDV DKFS +GE ISYRDHL HILDGLGSEYN FVT
Sbjct: 1   MSLKARLQKIRKDNLSLSQYLSQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVT 60

Query: 61  TIQNRSDNPALEDVRSLLLAYEARLERQTAVEQLNLAQANLSSLTIQHN 110
           +IQN  DN ++EDV SLLL+YEA+LE+Q A++ LN+AQA LS L+ QHN
Sbjct: 61  SIQNHVDNLSVEDVWSLLLSYEAQLEKQNAIDHLNIAQAYLSKLSFQHN 109

[Close]

BLAST of Tan0014113 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-31
Identity = 69/106 (65.09%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MGLKTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVT 60
           MG  +QLQ+IKKDGL+VSQYLAQIKDV D F+AIGEP+SYRDHL++IL+GLGSEYN FV+
Sbjct: 30  MGFCSQLQKIKKDGLTVSQYLAQIKDVLDNFAAIGEPLSYRDHLSYILEGLGSEYNPFVS 89

Query: 61  TIQNRSDNPALEDVRSLLLAYEARLERQTAVEQLNLAQANLSSLTI 107
           +I NR++ P++ DVR+LL+ Y++RLE+QTA + L L QAN++ L+I
Sbjct: 90  SIHNRTNRPSIADVRNLLITYDSRLEKQTATDHLQLIQANVAHLSI 135

[Close]

BLAST of Tan0014113 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-28
Identity = 64/101 (63.37%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 6   QLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVTTIQNR 65
           ++Q++KKDGLSVSQYLA+IK++T K S+IGEPIS +DH+++I++GLG EYN FVT+IQNR
Sbjct: 7   EIQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNR 66

Query: 66  SDNPALEDVRSLLLAYEARLERQTAVEQLNLAQANLSSLTI 107
           SD   LEDVR+LLLAY+ RLE+Q +V+QLN+ QAN+++L +
Sbjct: 67  SDMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQL 107

[Close]

BLAST of Tan0014113 vs. NCBI nr
Match: RVW57887.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-22
Identity = 55/99 (55.56%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MGLKTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVT 60
           +GL +QLQ+IKK+G+++S+YLA+IK V DK+SA+GEP+SY+D L H L+GL  +Y+ FV 
Sbjct: 31  LGLNSQLQKIKKEGITISEYLARIKKVFDKYSAMGEPLSYKDKLMHTLNGLTEKYDGFVI 90

Query: 61  TIQNRSDNPALEDVRSLLLAYEARLERQTAVEQLNLAQA 100
           +I NRSD P LE+V SLL  YE RLE++   +QL L Q+
Sbjct: 91  SIYNRSDKPYLEEVHSLLYTYEYRLEQRNTAQQLQLPQS 129

[Close]

BLAST of Tan0014113 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 8.5e-40
Identity = 84/131 (64.12%), Postives = 105/131 (80.15%), Query Frame = 0


Query: 1   MGLKTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVT 60
           MGLKT+LQ ++KDG SVSQYLA+IK++ DKF+A+GEP+SYRDHLAH+LDGLGSEYN FVT
Sbjct: 133 MGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEYNAFVT 192

Query: 61  TIQNRSDNPALEDVRSLLLAYEARLERQTAVEQLNLAQANLSSLTIQHNIFLASPTHLLK 120
           +I NR+D+P+LEDVRSLLLAYEARL++Q  V+QLN+AQANL +L++QHN     P     
Sbjct: 193 SIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNSKRPPPKFSFP 252

Query: 121 NGLPDPLPLVP 132
           N      P  P
Sbjct: 253 NHYKHSFPNSP 263

[Close]

BLAST of Tan0014113 vs. ExPASy TrEMBL
Match: A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.2e-29
Identity = 64/101 (63.37%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 6   QLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVTTIQNR 65
           ++Q++KKDGLSVSQYLA+IK++T K S+IGEPIS +DH+++I++GLG EYN FVT+IQNR
Sbjct: 7   EIQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNR 66

Query: 66  SDNPALEDVRSLLLAYEARLERQTAVEQLNLAQANLSSLTI 107
           SD   LEDVR+LLLAY+ RLE+Q +V+QLN+ QAN+++L +
Sbjct: 67  SDMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQL 107

[Close]

BLAST of Tan0014113 vs. ExPASy TrEMBL
Match: A0A438FD18 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1743 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.1e-22
Identity = 55/99 (55.56%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MGLKTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVT 60
           +GL +QLQ+IKK+G+++S+YLA+IK V DK+SA+GEP+SY+D L H L+GL  +Y+ FV 
Sbjct: 31  LGLNSQLQKIKKEGITISEYLARIKKVFDKYSAMGEPLSYKDKLMHTLNGLTEKYDGFVI 90

Query: 61  TIQNRSDNPALEDVRSLLLAYEARLERQTAVEQLNLAQA 100
           +I NRSD P LE+V SLL  YE RLE++   +QL L Q+
Sbjct: 91  SIYNRSDKPYLEEVHSLLYTYEYRLEQRNTAQQLQLPQS 129

[Close]

BLAST of Tan0014113 vs. ExPASy TrEMBL
Match: A0A5C7IHH0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-22
Identity = 49/86 (56.98%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 4   KTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVTTIQ 63
           ++QL  +KK+G +++QYL Q K++ DKF+AIGEP+SYRDHL ++L+GLG EY+ FVT+I+
Sbjct: 77  RSQLTNLKKEGTTINQYLFQFKEIVDKFAAIGEPLSYRDHLGYLLEGLGHEYDAFVTSIE 136

Query: 64  NRSDNPALEDVRSLLLAYEARLERQT 90
           NR D P++EDV SLLL++E RL ++T
Sbjct: 137 NRVDKPSIEDVESLLLSHERRLSKET 162

[Close]

BLAST of Tan0014113 vs. ExPASy TrEMBL
Match: A0A7J0E8R3 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_02g0010880 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.0e-22
Identity = 56/119 (47.06%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 3   LKTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVTTI 62
           L+T LQ IKKDGL+   Y+ + + + +  ++IGEP++Y DHL + L GLG +YN FVT+I
Sbjct: 44  LRTALQTIKKDGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSI 103

Query: 63  QNRSDNPALEDVRSLLLAYEARLERQTAVEQLNLAQANLSSLTIQHNIFLASPTHLLKN 122
           Q+++  P++E+V SLLL+Y+ARLERQ+A + L+  QANL++LT Q   F    T+   N
Sbjct: 104 QSQAIRPSIEEVHSLLLSYDARLERQSATDTLSSLQANLANLTYQKPKFKNPSTNSFPN 162

[Close]

BLAST of Tan0014113 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 3.8e-08
Identity = 31/102 (30.39%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 4   KTQLQRIKKDGLSVSQYLAQIKDVTDKFSAIGEPISYRDHLAHILDGLGSEYNVFVTTIQ 63
           + +L+    D LSV +Y  ++K ++D  + +  PIS R  + H+L+GL  +Y+  +  I+
Sbjct: 120 ENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIK 179

Query: 64  NRSDNPALEDVRSLLLAYEARLERQTAVEQLNLAQANLSSLT 106
           ++S  P+  + RS+LL  E+RL  ++   + +L+  N  SL+
Sbjct: 180 HKSPFPSFTEARSMLLMEESRLSNKS---KSSLSHTNHPSLS 218

The following BLAST results are available for this feature:

BLAST of Tan0014113 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014113 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155181.1	1.8e-39	64.12	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
XP_038891713.1	3.8e-34	69.72	uncharacterized protein LOC120081111 [Benincasa hispida]	[more]
XP_038887133.1	3.9e-31	65.09	uncharacterized protein LOC120077323 [Benincasa hispida]	[more]
XP_022148871.1	1.1e-28	63.37	uncharacterized protein LOC111017438 [Momordica charantia]	[more]
RVW57887.1	4.3e-22	55.56	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Tan0014113 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	8.5e-40	64.12	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1D6N7	5.2e-29	63.37	uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A438FD18	2.1e-22	55.56	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A5C7IHH0	4.7e-22	56.98	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1	[more]
A0A7J0E8R3	8.0e-22	47.06	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_02g0010880 PE=4 SV=1	[more]

BLAST of Tan0014113 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	3.8e-08	30.39	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..86 e-value: 1.3E-13 score: 50.9
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 1..106
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014113.1	Tan0014113.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding