Tan0014070 (gene) Snake gourd v1

Overview
NameTan0014070
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionsecreted acidic protein 1A-like
LocationLG03: 59655517 .. 59656213 (-)
RNA-Seq ExpressionTan0014070
SyntenyTan0014070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACATATAATCTCAACATCAGAAAACTTTTAAGTGAAAATGAAGTTGAAACTTCTTCTTCTCTTCTTTTTAATGTCTATTGTCTCCATCTTTCTTCTTTCTCTAGAAGTTGATGGTAGAAGGCTCCTACTCCAAAAACACTCTAAGCCCATGGAGCAAGGCAGTGATTCAAAAGAAAAGTTTCATGGTGATCAAAAGAAGAAACCAACTGACCTAGAACATCGCCCGAGCTACGAAAGTCCCGAAGGCGACGAAGGAGAATCTGGAGAGGGAGTTCCTTGCGGTGGCGACGACGACAAAGGAGAATGTGGAGAGAGCGATGAGGATTATTGTTTTGAAGGCAAGTGTGGGGGCGAAGATGGCGAAGGCGACGAACAAGATGATGGTGATTATGAAGGTATTGATGCTGAAGACAATCAAGGAGATGATTCCAAAGATGGTGATAATGATGATAAGGAAAATACTAGTGATGGAAAAGAGCATGGCGATGATCAGGATCCTGAAGGATATGGTGTTAATATGAAGAAAGTTGGTAATTGAAAAAGATAACTAGGTCACCAAAATCAATGTTTTCTTAAATTAACTAAATCTATCGATATAAAATTGAATTTGGTGTCTAGTACAACATAAAAAATCATTGTACCAATTTCTTTAAACAATGTATTGTGTGTTCTTTAATATTCTATCCAACACTTTAT

mRNA sequence

AACATATAATCTCAACATCAGAAAACTTTTAAGTGAAAATGAAGTTGAAACTTCTTCTTCTCTTCTTTTTAATGTCTATTGTCTCCATCTTTCTTCTTTCTCTAGAAGTTGATGGTAGAAGGCTCCTACTCCAAAAACACTCTAAGCCCATGGAGCAAGGCAGTGATTCAAAAGAAAAGTTTCATGGTGATCAAAAGAAGAAACCAACTGACCTAGAACATCGCCCGAGCTACGAAAGTCCCGAAGGCGACGAAGGAGAATCTGGAGAGGGAGTTCCTTGCGGTGGCGACGACGACAAAGGAGAATGTGGAGAGAGCGATGAGGATTATTGTTTTGAAGGCAAGTGTGGGGGCGAAGATGGCGAAGGCGACGAACAAGATGATGGTGATTATGAAGGTATTGATGCTGAAGACAATCAAGGAGATGATTCCAAAGATGGTGATAATGATGATAAGGAAAATACTAGTGATGGAAAAGAGCATGGCGATGATCAGGATCCTGAAGGATATGGTGTTAATATGAAGAAAGTTGGTAATTGAAAAAGATAACTAGGTCACCAAAATCAATGTTTTCTTAAATTAACTAAATCTATCGATATAAAATTGAATTTGGTGTCTAGTACAACATAAAAAATCATTGTACCAATTTCTTTAAACAATGTATTGTGTGTTCTTTAATATTCTATCCAACACTTTAT

Coding sequence (CDS)

ATGAAGTTGAAACTTCTTCTTCTCTTCTTTTTAATGTCTATTGTCTCCATCTTTCTTCTTTCTCTAGAAGTTGATGGTAGAAGGCTCCTACTCCAAAAACACTCTAAGCCCATGGAGCAAGGCAGTGATTCAAAAGAAAAGTTTCATGGTGATCAAAAGAAGAAACCAACTGACCTAGAACATCGCCCGAGCTACGAAAGTCCCGAAGGCGACGAAGGAGAATCTGGAGAGGGAGTTCCTTGCGGTGGCGACGACGACAAAGGAGAATGTGGAGAGAGCGATGAGGATTATTGTTTTGAAGGCAAGTGTGGGGGCGAAGATGGCGAAGGCGACGAACAAGATGATGGTGATTATGAAGGTATTGATGCTGAAGACAATCAAGGAGATGATTCCAAAGATGGTGATAATGATGATAAGGAAAATACTAGTGATGGAAAAGAGCATGGCGATGATCAGGATCCTGAAGGATATGGTGTTAATATGAAGAAAGTTGGTAATTGA

Protein sequence

MKLKLLLLFFLMSIVSIFLLSLEVDGRRLLLQKHSKPMEQGSDSKEKFHGDQKKKPTDLEHRPSYESPEGDEGESGEGVPCGGDDDKGECGESDEDYCFEGKCGGEDGEGDEQDDGDYEGIDAEDNQGDDSKDGDNDDKENTSDGKEHGDDQDPEGYGVNMKKVGN
Homology
BLAST of Tan0014070 vs. NCBI nr
Match: XP_022966660.1 (secreted acidic protein 1A-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-17
Identity = 90/169 (53.25%), Postives = 112/169 (66.27%), Query Frame = 0

Query: 1   MKLKL-LLLFFLMSIVSIFLLSLEVDGRRLLLQKHSKPMEQGSDSKEKFHGDQKKKPTDL 60
           +K+KL LLLF L+SI+SI LL L+VD RRLLLQK+S PM++GSD + KFH ++ K   + 
Sbjct: 5   LKMKLHLLLFLLLSILSISLLPLQVDARRLLLQKYSNPMKRGSDLEAKFHHERSKVEGE- 64

Query: 61  EHRPSYESPEGDEGESGEGVPCGGDDDKGEC--GESDEDYCFEGKCGGEDGEGDEQDDGD 120
               S   P  D+ E  EGVP   DDDKGE   G  DE+    G+    D   DE +  D
Sbjct: 65  ----SGGVPCDDDKEEHEGVP--NDDDKGESEEGVPDEEKGDSGENYEYDYSEDEFESKD 124

Query: 121 YEGIDAEDNQGDDSKDGDNDDKENTSDGKEHGDDQDPEGYGVNMKKVGN 167
             G D EDNQGDDSKDGDND+K N SDG E  D++DP+G+GVNMKKVG+
Sbjct: 125 KGGDDGEDNQGDDSKDGDNDNK-NGSDGIEVSDEEDPQGHGVNMKKVGD 165

BLAST of Tan0014070 vs. NCBI nr
Match: XP_023522864.1 (secreted acidic protein 1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-13
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 0

Query: 38  MEQGSDSKEKFH--------GDQKKKPTDLEHRPSYES-PEGD-EGESGEGVPCGGDDDK 97
           M+QGSD + KFH        G  +  P D E     E  P  D +GE GEGVP   DD K
Sbjct: 1   MKQGSDLEAKFHRERSGVEGGSGEGVPCDDEKGEQEEGVPNNDNKGEFGEGVP---DDGK 60

Query: 98  GECGESDEDYCFEGKCGGEDGEGDEQDDGDYE-GIDAEDNQGDDSKDGDNDDKENTSDGK 157
           G+  E+DE Y  E + G +D EGD++DD  Y+ G D EDNQGDDSKDGDND+K N SDG 
Sbjct: 61  GDSEENDEYYSSEDEFGSKDEEGDKEDDDYYKGGEDGEDNQGDDSKDGDNDNK-NGSDGI 120

Query: 158 EHGDDQDPEGYGVNMKKVGN 167
           EH D++DP+G+GVNMKKVG+
Sbjct: 121 EHSDEEDPQGHGVNMKKVGD 136

BLAST of Tan0014070 vs. NCBI nr
Match: KAG6595435.1 (hypothetical protein SDJN03_11988, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-07
Identity = 64/145 (44.14%), Postives = 78/145 (53.79%), Query Frame = 0

Query: 38  MEQGSDSKEKFHGDQKKKPTDLEHRPSYESPEGDEGESGEGVPCG-----------GDDD 97
           M+QGSD + K H ++ K                 EGE GEGVPC             DDD
Sbjct: 1   MKQGSDLEAKLHRERSKV----------------EGECGEGVPCDDDKEEPEEGVPNDDD 60

Query: 98  KGECGESDEDYCFEGKCGGEDG-----EGDEQDDGDYEGIDAEDNQGDDSKDGDNDDKEN 157
           KGE GE   D   E K   E+        DE +  D +G D EDNQ DDSK GDND+ EN
Sbjct: 61  KGESGEGVPD---EEKGDSEENYEYNYSEDESESKDKDGDDGEDNQEDDSKGGDNDN-EN 120

Query: 158 TSDGKEHGDDQDPEGYGVNMKKVGN 167
            SDG EH D++DP+G+GVNMKK+G+
Sbjct: 121 GSDGIEHSDEEDPQGHGVNMKKIGD 125

BLAST of Tan0014070 vs. ExPASy TrEMBL
Match: A0A6J1HS86 (secreted acidic protein 1A-like OS=Cucurbita maxima OX=3661 GN=LOC111466278 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 90/169 (53.25%), Postives = 112/169 (66.27%), Query Frame = 0

Query: 1   MKLKL-LLLFFLMSIVSIFLLSLEVDGRRLLLQKHSKPMEQGSDSKEKFHGDQKKKPTDL 60
           +K+KL LLLF L+SI+SI LL L+VD RRLLLQK+S PM++GSD + KFH ++ K   + 
Sbjct: 5   LKMKLHLLLFLLLSILSISLLPLQVDARRLLLQKYSNPMKRGSDLEAKFHHERSKVEGE- 64

Query: 61  EHRPSYESPEGDEGESGEGVPCGGDDDKGEC--GESDEDYCFEGKCGGEDGEGDEQDDGD 120
               S   P  D+ E  EGVP   DDDKGE   G  DE+    G+    D   DE +  D
Sbjct: 65  ----SGGVPCDDDKEEHEGVP--NDDDKGESEEGVPDEEKGDSGENYEYDYSEDEFESKD 124

Query: 121 YEGIDAEDNQGDDSKDGDNDDKENTSDGKEHGDDQDPEGYGVNMKKVGN 167
             G D EDNQGDDSKDGDND+K N SDG E  D++DP+G+GVNMKKVG+
Sbjct: 125 KGGDDGEDNQGDDSKDGDNDNK-NGSDGIEVSDEEDPQGHGVNMKKVGD 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022966660.13.2e-1753.25secreted acidic protein 1A-like [Cucurbita maxima][more]
XP_023522864.11.6e-1352.86secreted acidic protein 1A-like [Cucurbita pepo subsp. pepo][more]
KAG6595435.16.6e-0744.14hypothetical protein SDJN03_11988, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1HS861.5e-1753.25secreted acidic protein 1A-like OS=Cucurbita maxima OX=3661 GN=LOC111466278 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0014070.1Tan0014070.1mRNA