Tan0014012 (gene) Snake gourd v1

Overview
NameTan0014012
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG08: 68059755 .. 68060263 (-)
RNA-Seq ExpressionTan0014012
SyntenyTan0014012
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAGAGCAAACCGTTTAAGAGAAGAGCGAGAGAAATTAAACGAGAGAAAACAAGATGGAGGACAAGAAATTGGCTTTGGTGGTAGTGTTGGTGGCGATGATGTTTACGAGTTCTTTAGCAAAACTCGCCTCCGATGATCTCGAGCAAAATGAAAATGAGAACAATCAACTCCTCTCCGATGGTAGCAACGATCGAGTTGCGAACTACGATATCGGTAATTCGAGAAAAAGGATGAAAGACGCAGCGCCCCCGCCGCCACGGCCGCAATGTTTTGGAGACTTCTGTGGTGGTGGACTACTCCCCTGTGACGAACCCTGTTATTGCAACATCCCAATGGGTGCACAAAGGGGATATTGTGTTGACTTTTAATATCCTTAAATTTACATCCCTTTTTCCAAGTTACCTTTATGTATGCCTTAACGGCTATTTGCTTTCCTTTCATGGGACGAATGTTTGCAAAAATAAATAAAGTGGAGGTCAGTAATAATTGATCTTTTTCTAGTTAAA

mRNA sequence

AAACAGAGCAAACCGTTTAAGAGAAGAGCGAGAGAAATTAAACGAGAGAAAACAAGATGGAGGACAAGAAATTGGCTTTGGTGGTAGTGTTGGTGGCGATGATGTTTACGAGTTCTTTAGCAAAACTCGCCTCCGATGATCTCGAGCAAAATGAAAATGAGAACAATCAACTCCTCTCCGATGGTAGCAACGATCGAGTTGCGAACTACGATATCGGTAATTCGAGAAAAAGGATGAAAGACGCAGCGCCCCCGCCGCCACGGCCGCAATGTTTTGGAGACTTCTGTGGTGGTGGACTACTCCCCTGTGACGAACCCTGTTATTGCAACATCCCAATGGGTGCACAAAGGGGATATTGTGTTGACTTTTAATATCCTTAAATTTACATCCCTTTTTCCAAGTTACCTTTATGTATGCCTTAACGGCTATTTGCTTTCCTTTCATGGGACGAATGTTTGCAAAAATAAATAAAGTGGAGGTCAGTAATAATTGATCTTTTTCTAGTTAAA

Coding sequence (CDS)

ATGGAGGACAAGAAATTGGCTTTGGTGGTAGTGTTGGTGGCGATGATGTTTACGAGTTCTTTAGCAAAACTCGCCTCCGATGATCTCGAGCAAAATGAAAATGAGAACAATCAACTCCTCTCCGATGGTAGCAACGATCGAGTTGCGAACTACGATATCGGTAATTCGAGAAAAAGGATGAAAGACGCAGCGCCCCCGCCGCCACGGCCGCAATGTTTTGGAGACTTCTGTGGTGGTGGACTACTCCCCTGTGACGAACCCTGTTATTGCAACATCCCAATGGGTGCACAAAGGGGATATTGTGTTGACTTTTAA

Protein sequence

MEDKKLALVVVLVAMMFTSSLAKLASDDLEQNENENNQLLSDGSNDRVANYDIGNSRKRMKDAAPPPPRPQCFGDFCGGGLLPCDEPCYCNIPMGAQRGYCVDF
Homology
BLAST of Tan0014012 vs. NCBI nr
Match: KGN59161.1 (hypothetical protein Csa_002402 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 9.2e-23
Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MEDKKLALVVVLVAMMFTSSLAKLASDD----LEQNEN-ENNQLLSDGSNDRVANYDIGN 60
           ME KKLALVV++V  +FT SLA+ A +D     E+NEN E  QL SDGSND+   Y    
Sbjct: 1   MEGKKLALVVLMVMTIFTCSLAQDALNDDKRQFEKNENKEYIQLFSDGSNDKGVRYKDDY 60

Query: 61  SRKRMKDA----APPPPRPQCFGDFCGGGLLPCDEPCYCNIPMGAQRGYCV 103
           SRK MK+A      PPP P CFG+FCGGGLL CDEPC+CNIPMGA RG CV
Sbjct: 61  SRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111

BLAST of Tan0014012 vs. NCBI nr
Match: KAG6580718.1 (hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 62/111 (55.86%), Postives = 74/111 (66.67%), Query Frame = 0

Query: 1   MEDKKLALVVVLVAMMFTSSLAKLASDDLEQNENENNQLLSDGSNDRVANYDIGNSRKRM 60
           ME KK+ALVV+LV M FTS+LA+             NQL++DGSNDR A  D  +   +M
Sbjct: 1   MEGKKVALVVLLVTMAFTSALAR-------------NQLIADGSNDR-AGSDEYDELIKM 60

Query: 61  KDAAP-------PPPRPQCFGDFCGGGLLPCDEPCYCNIPMGAQRGYCVDF 105
            + AP       P PRP CFG+FCGGGLLPCDEPC+C IPMG+QRG CVDF
Sbjct: 61  AEGAPEAAPEPAPSPRPSCFGNFCGGGLLPCDEPCFCFIPMGSQRGSCVDF 97

BLAST of Tan0014012 vs. NCBI nr
Match: TYK30388.1 (hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-18
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0

Query: 1   MEDKKLALVVVLVAMMFTSSLAKLASDD---LEQNEN-ENNQLLSDGSND--RVANYDIG 60
           ME KKLALVVV+  M+FT  LA +A ++    E+NEN E  QL SD SN+      Y   
Sbjct: 1   MEGKKLALVVVMTTMIFTCCLAHVALNEERQFEENENKEYIQLFSDDSNNVGEGVKYKND 60

Query: 61  NSRKRMKDAAPPPPRPQ----CFGDFCGGGLLPCDEPCYCNIPMGAQRGYCV 103
            SRK +K+A  P P P     C+G+FCGGGLLPCDEPC+C+IP+GA RG CV
Sbjct: 61  YSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112

BLAST of Tan0014012 vs. NCBI nr
Match: KAA0043852.1 (hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 6.0e-14
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 12  LVAMMFTSSLAKLASDD---LEQNEN-ENNQLLSDGSND--RVANYDIGNSRKRMKDAAP 71
           +  M+FT  LA +A ++    E+NEN E  QL SD SN+      Y    SRK +K+A  
Sbjct: 1   MTTMIFTCCLAHVALNEERQFEENENKEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEAPT 60

Query: 72  PPPRPQ----CFGDFCGGGLLPCDEPCYCNIPMGAQRGYCV 103
           P P P     C+G+FCGGGLLPCDEPC+C+IP+GA RG CV
Sbjct: 61  PTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101

BLAST of Tan0014012 vs. ExPASy TrEMBL
Match: A0A0A0LGQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.4e-23
Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MEDKKLALVVVLVAMMFTSSLAKLASDD----LEQNEN-ENNQLLSDGSNDRVANYDIGN 60
           ME KKLALVV++V  +FT SLA+ A +D     E+NEN E  QL SDGSND+   Y    
Sbjct: 1   MEGKKLALVVLMVMTIFTCSLAQDALNDDKRQFEKNENKEYIQLFSDGSNDKGVRYKDDY 60

Query: 61  SRKRMKDA----APPPPRPQCFGDFCGGGLLPCDEPCYCNIPMGAQRGYCV 103
           SRK MK+A      PPP P CFG+FCGGGLL CDEPC+CNIPMGA RG CV
Sbjct: 61  SRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111

BLAST of Tan0014012 vs. ExPASy TrEMBL
Match: A0A5D3E3L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9509G00010 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.7e-19
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0

Query: 1   MEDKKLALVVVLVAMMFTSSLAKLASDD---LEQNEN-ENNQLLSDGSND--RVANYDIG 60
           ME KKLALVVV+  M+FT  LA +A ++    E+NEN E  QL SD SN+      Y   
Sbjct: 1   MEGKKLALVVVMTTMIFTCCLAHVALNEERQFEENENKEYIQLFSDDSNNVGEGVKYKND 60

Query: 61  NSRKRMKDAAPPPPRPQ----CFGDFCGGGLLPCDEPCYCNIPMGAQRGYCV 103
            SRK +K+A  P P P     C+G+FCGGGLLPCDEPC+C+IP+GA RG CV
Sbjct: 61  YSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112

BLAST of Tan0014012 vs. ExPASy TrEMBL
Match: A0A5A7TKL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001870 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 12  LVAMMFTSSLAKLASDD---LEQNEN-ENNQLLSDGSND--RVANYDIGNSRKRMKDAAP 71
           +  M+FT  LA +A ++    E+NEN E  QL SD SN+      Y    SRK +K+A  
Sbjct: 1   MTTMIFTCCLAHVALNEERQFEENENKEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEAPT 60

Query: 72  PPPRPQ----CFGDFCGGGLLPCDEPCYCNIPMGAQRGYCV 103
           P P P     C+G+FCGGGLLPCDEPC+C+IP+GA RG CV
Sbjct: 61  PTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN59161.19.2e-2360.36hypothetical protein Csa_002402 [Cucumis sativus][more]
KAG6580718.11.7e-2155.86hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK30388.11.8e-1853.57hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa][more]
KAA0043852.16.0e-1449.50hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A0A0LGQ34.4e-2360.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1[more]
A0A5D3E3L28.7e-1953.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TKL82.9e-1449.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0014012.1Tan0014012.1mRNA