Tan0013996 (gene) Snake gourd v1

Overview


Name	Tan0013996
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 70241436 .. 70242189 (+)
RNA-Seq Expression	Tan0013996
Synteny	Tan0013996

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGCATTCTTTTCTTTTCTTTTTTTCTCCTTACTCTTTATATTCCCCATTAATAAATCTCATCTTCCTTCAAGCATGAATTTTCCTTCTTTCTCTTTCTGTTCTTGAATTCTTTTCTTTTTTTGGGCGAAGGAAAAATTGAAAATGGGAAAGGAAAAGAGAAAGGGGATGCCGGCGGACAACGGCGGCGGAATTTGTGAAAAGAAGACTAAGAAGGACGAGACGGCGGCAGCGGCGGTGGAGGAACCGACCGATGAGGAGGTGGAGGAGTTCTATGTGATACTGCGGCGGATGAAGCAAGCGGCGGAGTATTTTGGAGTGAAAAAGGGGATGATGACGAAGAATTTGAGAGCGGTAGTTGCAGCGGCGGCGAATTTGGAAGAGAGAGAGGATGAGGAGAAGGAGGAGACGGCGGTGCCGTCAGCGGAGGTGGTGAAACGGCGTGGGAAGGGGAAGGAAGTGGTGGAGGAAAATGGGTTACGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGTGACGGCCGGTGATGGAGAATTTCCGGTCAGATCGAGATGATCGCCGGCGAAAAATTCCGACGTGGAACCGAACAACAAGCACGTGATCTCATAAATATACGAAGCTTTAAGTTTTCTTTTTCTTCTTCTAAAAAATATAAATATATTATATAATATGTTGCTTTGTTTTCCAGATCTGATCCTCTATTCTGCCTGCGAAGCGTTCAATCAATTCAATATGGTTTTTAGTTGCGACTTA

mRNA sequence

GAAGCATTCTTTTCTTTTCTTTTTTTCTCCTTACTCTTTATATTCCCCATTAATAAATCTCATCTTCCTTCAAGCATGAATTTTCCTTCTTTCTCTTTCTGTTCTTGAATTCTTTTCTTTTTTTGGGCGAAGGAAAAATTGAAAATGGGAAAGGAAAAGAGAAAGGGGATGCCGGCGGACAACGGCGGCGGAATTTGTGAAAAGAAGACTAAGAAGGACGAGACGGCGGCAGCGGCGGTGGAGGAACCGACCGATGAGGAGGTGGAGGAGTTCTATGTGATACTGCGGCGGATGAAGCAAGCGGCGGAGTATTTTGGAGTGAAAAAGGGGATGATGACGAAGAATTTGAGAGCGGTAGTTGCAGCGGCGGCGAATTTGGAAGAGAGAGAGGATGAGGAGAAGGAGGAGACGGCGGTGCCGTCAGCGGAGGTGGTGAAACGGCGTGGGAAGGGGAAGGAAGTGGTGGAGGAAAATGGGTTACGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGTGACGGCCGGTGATGGAGAATTTCCGGTCAGATCGAGATGATCGCCGGCGAAAAATTCCGACGTGGAACCGAACAACAAGCACGTGATCTCATAAATATACGAAGCTTTAAGTTTTCTTTTTCTTCTTCTAAAAAATATAAATATATTATATAATATGTTGCTTTGTTTTCCAGATCTGATCCTCTATTCTGCCTGCGAAGCGTTCAATCAATTCAATATGGTTTTTAGTTGCGACTTA

Coding sequence (CDS)

ATGGGAAAGGAAAAGAGAAAGGGGATGCCGGCGGACAACGGCGGCGGAATTTGTGAAAAGAAGACTAAGAAGGACGAGACGGCGGCAGCGGCGGTGGAGGAACCGACCGATGAGGAGGTGGAGGAGTTCTATGTGATACTGCGGCGGATGAAGCAAGCGGCGGAGTATTTTGGAGTGAAAAAGGGGATGATGACGAAGAATTTGAGAGCGGTAGTTGCAGCGGCGGCGAATTTGGAAGAGAGAGAGGATGAGGAGAAGGAGGAGACGGCGGTGCCGTCAGCGGAGGTGGTGAAACGGCGTGGGAAGGGGAAGGAAGTGGTGGAGGAAAATGGGTTACGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGTGACGGCCGGTGA

Protein sequence

MGKEKRKGMPADNGGGICEKKTKKDETAAAAVEEPTDEEVEEFYVILRRMKQAAEYFGVKKGMMTKNLRAVVAAAANLEEREDEEKEETAVPSAEVVKRRGKGKEVVEENGLRLDLNIAVAVESDGR

Homology

[Close]

BLAST of Tan0013996 vs. NCBI nr
Match: KAE8652459.1 (hypothetical protein Csa_013196 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 1   MGKEKRKGMPADNGGGICEKKTKKDETAAAAVEEPTDEEVEEFYVILRRMKQAAEYFGVK 60
           MGKEKRK    +N   I EKKTK D+T   A EEPTDEEVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRK-RQMENRAEIHEKKTKNDDTPTPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGMMTKNLRAVVAAAANLEEREDEEKEE-----TAVPSAEVVKRRGKGKEVVEENGLRLD 120
           +GM+ K+L AVVAAAA+ +E+++EE+EE      A PS   V RRGKGKEVVEENGLRLD
Sbjct: 61  RGMLAKSLSAVVAAAADQQEKKEEEEEEKKGLSMAAPSPAEVSRRGKGKEVVEENGLRLD 120

Query: 121 LNIAVAV-ESDG 127
           LNIA+AV +SDG
Sbjct: 121 LNIALAVQQSDG 131

[Close]

BLAST of Tan0013996 vs. NCBI nr
Match: KAG6589551.1 (hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 87/130 (66.92%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MGKEKRKGMPADNGGGICEKKTKKDETAAAAVEEPTDEEVEEFYVILRRMKQAAEYFGVK 60
           M + KRK   ++N G  CEKKTK DET AAA +EPTDEEVEEFY ILRRMK+AAEYFGV+
Sbjct: 1   MVRGKRK-CQSENDGKFCEKKTKNDETTAAAEKEPTDEEVEEFYSILRRMKRAAEYFGVE 60

Query: 61  KGMMTKNLRAVVAAAANLEEREDEE---KEETAVPSAEVVKRRGKGKEVVEENGLRLDLN 120
           KGM+TK+LR V AAAA+ EE+E+E+   K   A      +K+ GKGKEVV ENGLRLDLN
Sbjct: 61  KGMLTKSLRDVAAAAADREEKEEEKKGVKRAEAETDVARMKQGGKGKEVVAENGLRLDLN 120

Query: 121 IAVAVESDGR 128
           IAVAVESDGR
Sbjct: 121 IAVAVESDGR 129

[Close]

BLAST of Tan0013996 vs. NCBI nr
Match: KAA0058070.1 (hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-28
Identity = 86/130 (66.15%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MGKEKRKGMPADNGGGICEKKTKKDE-TAAAAVEEPTDEEVEEFYVILRRMKQAAEYFGV 60
           MGKEKRK    ++   I EKKT+ D+ TA+ A EEPTDEEVEEFY+ILRRMKQ AEYFGV
Sbjct: 1   MGKEKRK-RQLESRVPIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGV 60

Query: 61  KKGMMTKNLRAVVAAAANLEEREDEEKE-ETAVPSAEVVKRRGKG-KEVVEENGLR-LDL 120
           ++GM+TK+L AVVAAAAN +E+++EEK   TA P+     +RGK  KEVVEENGLR LDL
Sbjct: 61  ERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLDL 120

Query: 121 NIAVAVESDG 127
           NIAVAV+SDG
Sbjct: 121 NIAVAVQSDG 129

[Close]

BLAST of Tan0013996 vs. NCBI nr
Match: TYK28420.1 (hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-28
Identity = 86/130 (66.15%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MGKEKRKGMPADNGGGICEKKTKKDE-TAAAAVEEPTDEEVEEFYVILRRMKQAAEYFGV 60
           MGKEKRK    ++   I EKKT+ D+ TA+ A EEPTDEEVEEFY+ILRRMKQ AEYFGV
Sbjct: 1   MGKEKRK-RQLESRVRIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGV 60

Query: 61  KKGMMTKNLRAVVAAAANLEEREDEEKE-ETAVPSAEVVKRRGKG-KEVVEENGLR-LDL 120
           ++GM+TK+L AVVAAAAN +E+++EEK   TA P+     +RGK  KEVVEENGLR LDL
Sbjct: 61  ERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLDL 120

Query: 121 NIAVAVESDG 127
           NIAVAV+SDG
Sbjct: 121 NIAVAVQSDG 129

[Close]

BLAST of Tan0013996 vs. ExPASy TrEMBL
Match: A0A5D3DYW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00500 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.3e-28
Identity = 86/130 (66.15%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MGKEKRKGMPADNGGGICEKKTKKDE-TAAAAVEEPTDEEVEEFYVILRRMKQAAEYFGV 60
           MGKEKRK    ++   I EKKT+ D+ TA+ A EEPTDEEVEEFY+ILRRMKQ AEYFGV
Sbjct: 1   MGKEKRK-RQLESRVRIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGV 60

Query: 61  KKGMMTKNLRAVVAAAANLEEREDEEKE-ETAVPSAEVVKRRGKG-KEVVEENGLR-LDL 120
           ++GM+TK+L AVVAAAAN +E+++EEK   TA P+     +RGK  KEVVEENGLR LDL
Sbjct: 61  ERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLDL 120

Query: 121 NIAVAVESDG 127
           NIAVAV+SDG
Sbjct: 121 NIAVAVQSDG 129

[Close]

BLAST of Tan0013996 vs. ExPASy TrEMBL
Match: A0A5A7USD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003770 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.3e-28
Identity = 86/130 (66.15%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MGKEKRKGMPADNGGGICEKKTKKDE-TAAAAVEEPTDEEVEEFYVILRRMKQAAEYFGV 60
           MGKEKRK    ++   I EKKT+ D+ TA+ A EEPTDEEVEEFY+ILRRMKQ AEYFGV
Sbjct: 1   MGKEKRK-RQLESRVPIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGV 60

Query: 61  KKGMMTKNLRAVVAAAANLEEREDEEKE-ETAVPSAEVVKRRGKG-KEVVEENGLR-LDL 120
           ++GM+TK+L AVVAAAAN +E+++EEK   TA P+     +RGK  KEVVEENGLR LDL
Sbjct: 61  ERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLDL 120

Query: 121 NIAVAVESDG 127
           NIAVAV+SDG
Sbjct: 121 NIAVAVQSDG 129

The following BLAST results are available for this feature:

BLAST of Tan0013996 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013996 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652459.1	1.3e-31	66.67	hypothetical protein Csa_013196 [Cucumis sativus]	[more]
KAG6589551.1	1.7e-31	66.92	hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0058070.1	8.8e-28	66.15	hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa]	[more]
TYK28420.1	8.8e-28	66.15	hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0013996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYW7	4.3e-28	66.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7USD1	4.3e-28	66.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Tan0013996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR35735:SF5	TRANSMEMBRANE PROTEIN DDB_G0274347-LIKE	coord: 1..125
IPR034577	Protein NIM1-INTERACTING 2	PANTHER	PTHR35735	PROTEIN NIM1-INTERACTING 2	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013996.1	Tan0013996.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance