Tan0013878 (gene) Snake gourd v1

Overview
NameTan0013878
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUbiquitin-conjugating enzyme E2 C
LocationLG04: 4900672 .. 4902532 (+)
RNA-Seq ExpressionTan0013878
SyntenyTan0013878
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTGAGACCCAATCCGACGGCCGACAACTCGTCGATCTCGCAGCATCATCTCGCCAGTTCTCCATTGAAGCCGCCTGCTGCTTCTTCTAATCCTATCGACTCCAACGCTGTTGCGCAGAGGTGAATTTCTTGTCGATCATTCTTTTGGTTTATTGATTGTTTCGTTCCCGCGATTGTGGAGAATGGAAAGAATGAACAAGAATGGAAAGAAAACGATGGCAAGAATTGAGGAATGTACGATTTGAAGTTGCTTTCTAGTGTTTATAGTAAATCTGCTATGTTGATTATTGGATGCTTTTCCATGTTTTGATTACCAAATTTGTATCAGGCTTCAGATTCAAGCTTCCGACGAATTCTTATTAATTGCGATTATAGTAATGGGATTTTGACATTTTCCTTAATTTGGATGCAGGCTGCAAAAGGAATTGATGTCACTGATGGTATGTTTCCCAGTTTCATTTTAGTTTTACATTTTTCTCATGGTGTTTCTTTGATTCTTGAATTTTGGTATTTCGTGGTCCTCTCCTCTTGAGTCGGTATTGATGGCATGTAGTTGGTTGAAACTGTGAGAATAAGCAATTTTTGGGGTTCTCCCTGCAGAGTGGGGATGGGTTTGGTGATCAATCTTCATTTGGAAAATGTGTAATTTACTGCTCTTCCCTTTTGTTGTTGAACCATGACCCCATCCCATCGACTCCCTGGGACAAGTGTAGTTTGTCCCGACGTCGGTTCTTTGAACTTTGCATTTCTTTTGTTGCAGAACCATGATCATAGGCAATTAGTGGCTTCTTGGATTTGAACTTTGCATTTCTTTGTCTTGCATCTTGCTGAATATTTGTTTCTATGACATCTTGTTATGCCATAGTAATCTGTGGTATCTTTAAATCTAGAATTTCAAAACAATGAAATGGTTGGAAAGGGTTAGGAACTAGGTTATTGTCTGCCTTTTGGATATGGATAGTTCATTAACCATATTTGTTTGGTGGTGCTCTCTACCTAGATGAGTGGAGGTGATCTTGGTGTATCAGCTTTTCCAGAAGGTGAGAGCATTTTCACATGGATAGGCACGATTGAGGGTGGGAAAGGAACTGCATATGAGGGTTTGTCTTACAAGCTCTCTTTACATTTTCCCATGGACTACCCTTTCAAGCCACCCCTTGTTAAGTTTGAGACAATGTGCTTCCATCCAAATGTCGATCAATATGGCAACATTTGTCTCGACATTCTCCAGGTATCAGTTAAATATGCAGGGGTGTTTTTGCTATAATGTTGGATGGGGAAAGTACCCGTAATCTTAATTTGAGAAATCTTTTTGATGTTTATTATTGAAAGTTCGTTGGGGCATATAAAGCACCTCGACGTTCATTTAGTTGATTTTTCAAATCTCCTCCTGATATCGATGTAACTTCCTTTTCAATAGGACAAGTGGTCTTCAGCATATGATTGCAGAACCATTCTTTTGTCTATTCAAAGCCTATTAGGAGGTTTGTTCATTTCTGCCTGCAAATTTGGCAATATTCTAATCTTGATGACCCTCTCATCCATGTGAAGTTGTGTTTACTTGCAGAGCCCAACCCAGAGAGTCCTCTCAACAGCTATGCTGCTGCTTTGTGGAATAATAAGGAAGGTTGGACTCAACACACACACTGTCTCTCTAAGCTTTGACTCTAAAATATATGCTTCGACTACCTCCGAGTTGAAACAGTTTCAAGGGCGACATCTCTTGCTTCTCTTCTCATGATAAACATGAAGCAATAAAGGCACATATCTAAGCTGATTGTTTGTTTTCTTATTGTCCAGATTACAGAAAGATGGTCCACAAACAGTATTTTTCTGGTGCAGTCTTAGACGGCTGA

mRNA sequence

ATGGAGGTGAGACCCAATCCGACGGCCGACAACTCGTCGATCTCGCAGCATCATCTCGCCAGTTCTCCATTGAAGCCGCCTGCTGCTTCTTCTAATCCTATCGACTCCAACGCTGTTGCGCAGAGGCTGCAAAAGGAATTGATGTCACTGATGATGAGTGGAGGTGATCTTGGTGTATCAGCTTTTCCAGAAGGTGAGAGCATTTTCACATGGATAGGCACGATTGAGGGTGGGAAAGGAACTGCATATGAGGGTTTGTCTTACAAGCTCTCTTTACATTTTCCCATGGACTACCCTTTCAAGCCACCCCTTGTTAAGTTTGAGACAATGTGCTTCCATCCAAATGTCGATCAATATGGCAACATTTGTCTCGACATTCTCCAGGACAAGTGGTCTTCAGCATATGATTGCAGAACCATTCTTTTGTCTATTCAAAGCCTATTAGGAGAGCCCAACCCAGAGAGTCCTCTCAACAGCTATGCTGCTGCTTTGTGGAATAATAAGGAAGATTACAGAAAGATGGTCCACAAACAGTATTTTTCTGGTGCAGTCTTAGACGGCTGA

Coding sequence (CDS)

ATGGAGGTGAGACCCAATCCGACGGCCGACAACTCGTCGATCTCGCAGCATCATCTCGCCAGTTCTCCATTGAAGCCGCCTGCTGCTTCTTCTAATCCTATCGACTCCAACGCTGTTGCGCAGAGGCTGCAAAAGGAATTGATGTCACTGATGATGAGTGGAGGTGATCTTGGTGTATCAGCTTTTCCAGAAGGTGAGAGCATTTTCACATGGATAGGCACGATTGAGGGTGGGAAAGGAACTGCATATGAGGGTTTGTCTTACAAGCTCTCTTTACATTTTCCCATGGACTACCCTTTCAAGCCACCCCTTGTTAAGTTTGAGACAATGTGCTTCCATCCAAATGTCGATCAATATGGCAACATTTGTCTCGACATTCTCCAGGACAAGTGGTCTTCAGCATATGATTGCAGAACCATTCTTTTGTCTATTCAAAGCCTATTAGGAGAGCCCAACCCAGAGAGTCCTCTCAACAGCTATGCTGCTGCTTTGTGGAATAATAAGGAAGATTACAGAAAGATGGTCCACAAACAGTATTTTTCTGGTGCAGTCTTAGACGGCTGA

Protein sequence

MEVRPNPTADNSSISQHHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQYFSGAVLDG
Homology
[Close]
BLAST of Tan0013878 vs. ExPASy Swiss-Prot
Match: Q8L7T3 (Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana OX=3702 GN=UBC20 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.6e-58
Identity = 111/160 (69.38%), Postives = 125/160 (78.12%), Query Frame = 0 

Query: 20  ASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGK 79
           AS+  K PAA +  +DS +V +RLQ ELM LMM GG  G+SAFPE ++IF W GTI G K
Sbjct: 17  ASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGP-GISAFPEEDNIFCWKGTITGSK 76

Query: 80  GTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 139
            T +EG  Y+LSL F  DYPFKPP VKFET CFHPNVD YGNICLDILQDKWSSAYD RT
Sbjct: 77  DTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRT 136

Query: 140 ILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           ILLSIQSLLGEPN  SPLN+ AA LW+N+E+YRKMV K Y
Sbjct: 137 ILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYRKMVEKLY 175

[Close]
BLAST of Tan0013878 vs. ExPASy Swiss-Prot
Match: Q9LJZ5 (Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana OX=3702 GN=UBC19 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.8e-55
Identity = 107/160 (66.88%), Postives = 123/160 (76.88%), Query Frame = 0 

Query: 20  ASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGK 79
           A++  K  A  +  +DS++V +RLQ ELM LMM G D G+SAFPE ++IF W GTI G K
Sbjct: 18  AATGSKQSAPPTKTVDSHSVLKRLQSELMGLMM-GADPGISAFPEEDNIFCWKGTITGSK 77

Query: 80  GTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 139
            T +EG  Y+LSL F  DYPFK P VKFET CFHPNVD YGNICLDILQDKWSSAYD RT
Sbjct: 78  DTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRT 137

Query: 140 ILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           ILLSIQSLLGEPN  SPLN+ AA LW+N+E+YRKMV K Y
Sbjct: 138 ILLSIQSLLGEPNISSPLNNQAAQLWSNQEEYRKMVEKLY 176

[Close]
BLAST of Tan0013878 vs. ExPASy Swiss-Prot
Match: Q54XS6 (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum OX=44689 GN=ube2c PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.2e-53
Identity = 93/143 (65.03%), Postives = 121/143 (84.62%), Query Frame = 0 

Query: 37  NAVAQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPM 96
           ++V++RLQ ELM+LMM G   G+SAFP+G++IF WIGTI+G K T YE + +K+SL FP 
Sbjct: 5   HSVSKRLQSELMNLMM-GPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPT 64

Query: 97  DYPFKPPLVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 156
           DYP+KPP VKFET CFHPNVD  GNICLDIL+DKWS  Y+ R++L+SIQSLLGEPN ESP
Sbjct: 65  DYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESP 124

Query: 157 LNSYAAALWNNKEDYRKMVHKQY 180
           LNSYAA+LW+N+++Y+K++ K+Y
Sbjct: 125 LNSYAASLWSNQDEYKKVLDKRY 146

[Close]
BLAST of Tan0013878 vs. ExPASy Swiss-Prot
Match: P56616 (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis OX=8355 GN=ube2c PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 103/171 (60.23%), Postives = 123/171 (71.93%), Query Frame = 0 

Query: 19  LASSPLKPPAASS----------NPIDSNAVAQRLQKELMSLMMSGGDLGVSAFPEGESI 78
           +AS  + P AASS                +V +RLQ+ELM+LMMS GD G+SAFPE +++
Sbjct: 1   MASQNVDPAAASSVASRKGQESGTSAARGSVGKRLQQELMTLMMS-GDKGISAFPESDNL 60

Query: 79  FTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYGNICLDILQ 138
           F WIGTI+G  GT YE L YKLSL FP  YP+  P VKF T CFHPNVD +GNICLDIL+
Sbjct: 61  FKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILK 120

Query: 139 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           DKWS+ YD RTILLS+QSLLGEPN ESPLN YAA LW N+  Y+K +H+QY
Sbjct: 121 DKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTAYKKHLHEQY 170

[Close]
BLAST of Tan0013878 vs. ExPASy Swiss-Prot
Match: Q95044 (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima OX=6584 GN=UBE2C PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.4e-50
Identity = 85/145 (58.62%), Postives = 122/145 (84.14%), Query Frame = 0 

Query: 35  DSNAVAQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHF 94
           + ++V++RLQ+EL +L+MS GD G++AFP+G+++F W+ T++G K T YE L YKL+L F
Sbjct: 27  ERHSVSKRLQQELRTLLMS-GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEF 86

Query: 95  PMDYPFKPPLVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 154
           P DYP+KPP+VKF T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN  
Sbjct: 87  PSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNA 146

Query: 155 SPLNSYAAALWNNKEDYRKMVHKQY 180
           SPLN+ AA +W+N+ +Y+K++H++Y
Sbjct: 147 SPLNAQAADMWSNQTEYKKVLHEKY 170

[Close]
BLAST of Tan0013878 vs. NCBI nr
Match: XP_022138984.1 (probable ubiquitin-conjugating enzyme E2 C [Momordica charantia])

HSP 1 Score: 374.0 bits (959), Expect = 7.5e-100
Identity = 180/187 (96.26%), Postives = 183/187 (97.86%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQHHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS 60
           MEVRPNPTADNSSI QHHL +SPLK PAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS
Sbjct: 1   MEVRPNPTADNSSIPQHHLTTSPLKQPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS 60

Query: 61  AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYG 120
           AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSL+FPMDYPFKPPLVKFET+CFHPNVDQYG
Sbjct: 61  AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLNFPMDYPFKPPLVKFETLCFHPNVDQYG 120

Query: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQYF 180
           NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNN EDYRKMVHKQYF
Sbjct: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNTEDYRKMVHKQYF 180

Query: 181 SGAVLDG 188
           SGAVLDG
Sbjct: 181 SGAVLDG 187

[Close]
BLAST of Tan0013878 vs. NCBI nr
Match: XP_038893450.1 (probable ubiquitin-conjugating enzyme E2 C isoform X1 [Benincasa hispida])

HSP 1 Score: 374.0 bits (959), Expect = 7.5e-100
Identity = 179/187 (95.72%), Postives = 183/187 (97.86%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQHHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS 60
           MEVRPNPT+DNSS+ QHHL SSPLK PAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS
Sbjct: 1   MEVRPNPTSDNSSMLQHHLISSPLKQPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS 60

Query: 61  AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYG 120
           AFP+GESIFTWIGTIEGGKGT YEGLSYKLSLHFPM+YPFKPPLVKFETMCFHPNVDQYG
Sbjct: 61  AFPDGESIFTWIGTIEGGKGTTYEGLSYKLSLHFPMEYPFKPPLVKFETMCFHPNVDQYG 120

Query: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQYF 180
           NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQYF
Sbjct: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQYF 180

Query: 181 SGAVLDG 188
           SGAVLDG
Sbjct: 181 SGAVLDG 187

[Close]
BLAST of Tan0013878 vs. NCBI nr
Match: XP_004142430.1 (probable ubiquitin-conjugating enzyme E2 C isoform X1 [Cucumis sativus] >KGN52282.1 hypothetical protein Csa_008141 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-97
Identity = 178/188 (94.68%), Postives = 183/188 (97.34%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQ-HHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60
           MEVRPNPT +NSS+SQ HHL SS LK PAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV
Sbjct: 1   MEVRPNPTPENSSMSQHHHLISSSLKQPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60

Query: 61  SAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQY 120
           SAFP+GESIFTWIGTIEGGKGT+YEGLSYKLSLHFPM+YPFKPPLVKFETMCFHPNVDQY
Sbjct: 61  SAFPDGESIFTWIGTIEGGKGTSYEGLSYKLSLHFPMEYPFKPPLVKFETMCFHPNVDQY 120

Query: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY
Sbjct: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180

Query: 181 FSGAVLDG 188
           FSGAVLDG
Sbjct: 181 FSGAVLDG 188

[Close]
BLAST of Tan0013878 vs. NCBI nr
Match: KAG6573830.1 (Ubiquitin-conjugating enzyme E2 19, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012897.1 Ubiquitin-conjugating enzyme E2 19 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 177/187 (94.65%), Postives = 180/187 (96.26%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQHHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS 60
           MEVRPNPT DNSSISQ HL SS LK P+ASSNPIDSNAVAQRLQKELMSLMMSG DLGVS
Sbjct: 1   MEVRPNPTGDNSSISQQHLTSSSLKQPSASSNPIDSNAVAQRLQKELMSLMMSGDDLGVS 60

Query: 61  AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYG 120
           AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPM+YPFKPPLVKFETMCFHPNVDQYG
Sbjct: 61  AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMEYPFKPPLVKFETMCFHPNVDQYG 120

Query: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQYF 180
           NICLDILQDKWSSAYDCRTILLSIQSLLGE NPESPLNSYAAALWNNKEDYRKMVHKQYF
Sbjct: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGESNPESPLNSYAAALWNNKEDYRKMVHKQYF 180

Query: 181 SGAVLDG 188
           SGAV+DG
Sbjct: 181 SGAVMDG 187

[Close]
BLAST of Tan0013878 vs. NCBI nr
Match: XP_008446898.1 (PREDICTED: probable ubiquitin-conjugating enzyme E2 C [Cucumis melo] >KAA0034731.1 putative ubiquitin-conjugating enzyme E2 C [Cucumis melo var. makuwa] >TYK09284.1 putative ubiquitin-conjugating enzyme E2 C [Cucumis melo var. makuwa])

HSP 1 Score: 365.9 bits (938), Expect = 2.0e-97
Identity = 177/188 (94.15%), Postives = 182/188 (96.81%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQ-HHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60
           MEVRPNPT +NSS+SQ HHL SS LK PAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV
Sbjct: 1   MEVRPNPTPENSSVSQHHHLISSSLKQPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60

Query: 61  SAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQY 120
           SAFP+GESIFTWIGTI+GGKGT YEGLSYKLSLHFPM+YPFKPPLVKFETMCFHPNVDQY
Sbjct: 61  SAFPDGESIFTWIGTIQGGKGTTYEGLSYKLSLHFPMEYPFKPPLVKFETMCFHPNVDQY 120

Query: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY
Sbjct: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180

Query: 181 FSGAVLDG 188
           FSGAVLDG
Sbjct: 181 FSGAVLDG 188

[Close]
BLAST of Tan0013878 vs. ExPASy TrEMBL
Match: A0A6J1CBM1 (probable ubiquitin-conjugating enzyme E2 C OS=Momordica charantia OX=3673 GN=LOC111010030 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.6e-100
Identity = 180/187 (96.26%), Postives = 183/187 (97.86%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQHHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS 60
           MEVRPNPTADNSSI QHHL +SPLK PAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS
Sbjct: 1   MEVRPNPTADNSSIPQHHLTTSPLKQPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS 60

Query: 61  AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYG 120
           AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSL+FPMDYPFKPPLVKFET+CFHPNVDQYG
Sbjct: 61  AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLNFPMDYPFKPPLVKFETLCFHPNVDQYG 120

Query: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQYF 180
           NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNN EDYRKMVHKQYF
Sbjct: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNTEDYRKMVHKQYF 180

Query: 181 SGAVLDG 188
           SGAVLDG
Sbjct: 181 SGAVLDG 187

[Close]
BLAST of Tan0013878 vs. ExPASy TrEMBL
Match: A0A0A0KV09 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623460 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.8e-98
Identity = 178/188 (94.68%), Postives = 183/188 (97.34%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQ-HHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60
           MEVRPNPT +NSS+SQ HHL SS LK PAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV
Sbjct: 1   MEVRPNPTPENSSMSQHHHLISSSLKQPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60

Query: 61  SAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQY 120
           SAFP+GESIFTWIGTIEGGKGT+YEGLSYKLSLHFPM+YPFKPPLVKFETMCFHPNVDQY
Sbjct: 61  SAFPDGESIFTWIGTIEGGKGTSYEGLSYKLSLHFPMEYPFKPPLVKFETMCFHPNVDQY 120

Query: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY
Sbjct: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180

Query: 181 FSGAVLDG 188
           FSGAVLDG
Sbjct: 181 FSGAVLDG 188

[Close]
BLAST of Tan0013878 vs. ExPASy TrEMBL
Match: A0A5D3CDL5 (Putative ubiquitin-conjugating enzyme E2 C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002790 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 9.9e-98
Identity = 177/188 (94.15%), Postives = 182/188 (96.81%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQ-HHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60
           MEVRPNPT +NSS+SQ HHL SS LK PAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV
Sbjct: 1   MEVRPNPTPENSSVSQHHHLISSSLKQPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60

Query: 61  SAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQY 120
           SAFP+GESIFTWIGTI+GGKGT YEGLSYKLSLHFPM+YPFKPPLVKFETMCFHPNVDQY
Sbjct: 61  SAFPDGESIFTWIGTIQGGKGTTYEGLSYKLSLHFPMEYPFKPPLVKFETMCFHPNVDQY 120

Query: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY
Sbjct: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180

Query: 181 FSGAVLDG 188
           FSGAVLDG
Sbjct: 181 FSGAVLDG 188

[Close]
BLAST of Tan0013878 vs. ExPASy TrEMBL
Match: A0A1S3BH18 (probable ubiquitin-conjugating enzyme E2 C OS=Cucumis melo OX=3656 GN=LOC103489475 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 9.9e-98
Identity = 177/188 (94.15%), Postives = 182/188 (96.81%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQ-HHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60
           MEVRPNPT +NSS+SQ HHL SS LK PAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV
Sbjct: 1   MEVRPNPTPENSSVSQHHHLISSSLKQPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60

Query: 61  SAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQY 120
           SAFP+GESIFTWIGTI+GGKGT YEGLSYKLSLHFPM+YPFKPPLVKFETMCFHPNVDQY
Sbjct: 61  SAFPDGESIFTWIGTIQGGKGTTYEGLSYKLSLHFPMEYPFKPPLVKFETMCFHPNVDQY 120

Query: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY
Sbjct: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180

Query: 181 FSGAVLDG 188
           FSGAVLDG
Sbjct: 181 FSGAVLDG 188

[Close]
BLAST of Tan0013878 vs. ExPASy TrEMBL
Match: A0A6J1G1M3 (probable ubiquitin-conjugating enzyme E2 C isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449838 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.9e-96
Identity = 175/186 (94.09%), Postives = 178/186 (95.70%), Query Frame = 0 

Query: 1   MEVRPNPTADNSSISQHHLASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVS 60
           MEVRPNPT DNSSISQ HL SS LK P+ASSNPIDSNAVAQRLQKELMSLMMSG DLGVS
Sbjct: 1   MEVRPNPTGDNSSISQQHLTSSSLKQPSASSNPIDSNAVAQRLQKELMSLMMSGDDLGVS 60

Query: 61  AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYG 120
           AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPM+YPFKPPLVKFET CFHPNVDQYG
Sbjct: 61  AFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMEYPFKPPLVKFETTCFHPNVDQYG 120

Query: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQYF 180
           NICLDILQDKWSSAYDCRTILLSIQSLLGE NPESPLNSYAAALWNNKEDYRKMVHKQYF
Sbjct: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGESNPESPLNSYAAALWNNKEDYRKMVHKQYF 180

Query: 181 SGAVLD 187
           SGAV+D
Sbjct: 181 SGAVMD 186

[Close]
BLAST of Tan0013878 vs. TAIR 10
Match: AT1G50490.1 (ubiquitin-conjugating enzyme 20 )

HSP 1 Score: 225.3 bits (573), Expect = 4.0e-59
Identity = 111/160 (69.38%), Postives = 125/160 (78.12%), Query Frame = 0 

Query: 20  ASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGK 79
           AS+  K PAA +  +DS +V +RLQ ELM LMM GG  G+SAFPE ++IF W GTI G K
Sbjct: 17  ASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGP-GISAFPEEDNIFCWKGTITGSK 76

Query: 80  GTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 139
            T +EG  Y+LSL F  DYPFKPP VKFET CFHPNVD YGNICLDILQDKWSSAYD RT
Sbjct: 77  DTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRT 136

Query: 140 ILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           ILLSIQSLLGEPN  SPLN+ AA LW+N+E+YRKMV K Y
Sbjct: 137 ILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYRKMVEKLY 175

[Close]
BLAST of Tan0013878 vs. TAIR 10
Match: AT3G20060.1 (ubiquitin-conjugating enzyme19 )

HSP 1 Score: 215.3 bits (547), Expect = 4.1e-56
Identity = 107/160 (66.88%), Postives = 123/160 (76.88%), Query Frame = 0 

Query: 20  ASSPLKPPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGK 79
           A++  K  A  +  +DS++V +RLQ ELM LMM G D G+SAFPE ++IF W GTI G K
Sbjct: 18  AATGSKQSAPPTKTVDSHSVLKRLQSELMGLMM-GADPGISAFPEEDNIFCWKGTITGSK 77

Query: 80  GTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 139
            T +EG  Y+LSL F  DYPFK P VKFET CFHPNVD YGNICLDILQDKWSSAYD RT
Sbjct: 78  DTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRT 137

Query: 140 ILLSIQSLLGEPNPESPLNSYAAALWNNKEDYRKMVHKQY 180
           ILLSIQSLLGEPN  SPLN+ AA LW+N+E+YRKMV K Y
Sbjct: 138 ILLSIQSLLGEPNISSPLNNQAAQLWSNQEEYRKMVEKLY 176

[Close]
BLAST of Tan0013878 vs. TAIR 10
Match: AT3G20060.2 (ubiquitin-conjugating enzyme19 )

HSP 1 Score: 198.4 bits (503), Expect = 5.2e-51
Identity = 96/132 (72.73%), Postives = 105/132 (79.55%), Query Frame = 0 

Query: 48  MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKF 107
           M LMM G D G+SAFPE ++IF W GTI G K T +EG  Y+LSL F  DYPFK P VKF
Sbjct: 1   MGLMM-GADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKF 60

Query: 108 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNN 167
           ET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA LW+N
Sbjct: 61  ETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSN 120

Query: 168 KEDYRKMVHKQY 180
           +E+YRKMV K Y
Sbjct: 121 QEEYRKMVEKLY 131

[Close]
BLAST of Tan0013878 vs. TAIR 10
Match: AT5G62540.1 (ubiquitin-conjugating enzyme 3 )

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-29
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = 0 

Query: 57  LGVSAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFPMDYPFKPPLVKFETMCFHPNV 116
           +G+S  P+  +I  W   I G + T ++G ++KL+LHF  DYP KPP+V+F +  FHPN+
Sbjct: 22  VGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNI 81

Query: 117 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWN-NKEDYRKMV 176
              G+ICLDILQ++WS  YD   +L SIQSLL +PNP+SP N+ AA L++ NK +Y + V
Sbjct: 82  YADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKV 141

[Close]
BLAST of Tan0013878 vs. TAIR 10
Match: AT1G14400.1 (ubiquitin carrier protein 1 )

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-27
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 0 

Query: 36  SNAVAQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLHFP 95
           S    +RL ++   L       G+S  P+  +I  W   I G   T ++G ++KLSL F 
Sbjct: 2   STPARKRLMRDFKRLQQD-PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 61

Query: 96  MDYPFKPPLVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 155
            DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP S
Sbjct: 62  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 121

Query: 156 PLNSYAAALWN-NKEDYRKMV 176
           P NS AA +++ +K +Y + V
Sbjct: 122 PANSEAARMYSESKREYNRRV 141

The following BLAST results are available for this feature:
BLAST of Tan0013878 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L7T35.6e-5869.38Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana OX=3702 GN=UBC20 PE=2... [more]
Q9LJZ55.8e-5566.88Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana OX=3702 GN=UBC19 PE=1... [more]
Q54XS64.2e-5365.03Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum OX=44689 ... [more]
P566162.7e-5260.23Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis OX=8355 GN=ube2c PE=1 SV=1[more]
Q950447.4e-5058.62Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima OX=6584 GN=UBE2C PE=1 S... [more]
BLAST of Tan0013878 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138984.17.5e-10096.26probable ubiquitin-conjugating enzyme E2 C [Momordica charantia][more]
XP_038893450.17.5e-10095.72probable ubiquitin-conjugating enzyme E2 C isoform X1 [Benincasa hispida][more]
XP_004142430.11.2e-9794.68probable ubiquitin-conjugating enzyme E2 C isoform X1 [Cucumis sativus] >KGN5228... [more]
KAG6573830.11.6e-9794.65Ubiquitin-conjugating enzyme E2 19, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_008446898.12.0e-9794.15PREDICTED: probable ubiquitin-conjugating enzyme E2 C [Cucumis melo] >KAA0034731... [more]
BLAST of Tan0013878 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CBM13.6e-10096.26probable ubiquitin-conjugating enzyme E2 C OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0KV095.8e-9894.68UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623460 PE... [more]
A0A5D3CDL59.9e-9894.15Putative ubiquitin-conjugating enzyme E2 C OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3BH189.9e-9894.15probable ubiquitin-conjugating enzyme E2 C OS=Cucumis melo OX=3656 GN=LOC1034894... [more]
A0A6J1G1M31.9e-9694.09probable ubiquitin-conjugating enzyme E2 C isoform X2 OS=Cucurbita moschata OX=3... [more]
BLAST of Tan0013878 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G50490.14.0e-5969.38ubiquitin-conjugating enzyme 20 [more]
AT3G20060.14.1e-5666.88ubiquitin-conjugating enzyme19 [more]
AT3G20060.25.2e-5172.73ubiquitin-conjugating enzyme19 [more]
AT5G62540.17.4e-2948.33ubiquitin-conjugating enzyme 3 [more]
AT1G14400.11.8e-2743.97ubiquitin carrier protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 41..184
e-value: 4.9E-54
score: 195.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availablePANTHERPTHR24068:SF320UBIQUITIN-CONJUGATING ENZYME E2 C-RELATEDcoord: 21..182
NoneNo IPR availablePANTHERPTHR24068UBIQUITIN-CONJUGATING ENZYME E2coord: 21..182
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 42..177
e-value: 2.5E-43
score: 147.1
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 38..184
score: 44.460594
IPR000608Ubiquitin-conjugating enzyme E2CDDcd00195UBCccoord: 41..175
e-value: 2.20527E-60
score: 182.787
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 32..181
e-value: 1.2E-53
score: 182.8
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 36..183
IPR023313Ubiquitin-conjugating enzyme, active sitePROSITEPS00183UBC_1coord: 112..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0013878.1Tan0013878.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031145 anaphase-promoting complex-dependent catabolic process
biological_process GO:0006952 defense response
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0030071 regulation of mitotic metaphase/anaphase transition
biological_process GO:0009607 response to biotic stimulus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0061631 ubiquitin conjugating enzyme activity