Tan0013828 (gene) Snake gourd v1

Overview


Name	Tan0013828
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L23
Location	LG01: 13972937 .. 13973762 (+)
RNA-Seq Expression	Tan0013828
Synteny	Tan0013828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTCTTGCAGGGTTCGGTTTCATTCCTTCCCCGCCTGCTGTTCATAGACGCTTTTGGGAGGAACAAAGAAAGCCAAGAACATGGGAAGCAGGCTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCCTCTGCTTCCAAAATCGAAATCAAGCGCGTTCTCGAGAGCCTCTACGGGTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGAGAGGCCAAGAGGCATTGGCTACATGAAAAGGAGCCAATGGGATTGAAAGCTTACAAGGGTTTTGCGGATAGAGGCCGCCGACGAATTGGCGGCGTTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTTTGAAGAATGCATCCCTGTTTATTGTGATCTGTTTTGGATTTTTTGTTTCTTCTAAACGATGATAGTGTAATAGGTTGATGACTGCTTTGAGCTTAATGATAAATTGTTTGTTTTTCTAGTTGTGAAATGAACTCTTGTTGTCCCTTTTATGGGGCGTTTTGCTGGAGGAAGTTCTGTTTTCTGCTTAAATCAATAAAGAAATTAGAGTTGTATTTGTATTA

mRNA sequence

GCGTCTTGCAGGGTTCGGTTTCATTCCTTCCCCGCCTGCTGTTCATAGACGCTTTTGGGAGGAACAAAGAAAGCCAAGAACATGGGAAGCAGGCTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCCTCTGCTTCCAAAATCGAAATCAAGCGCGTTCTCGAGAGCCTCTACGGGTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGAGAGGCCAAGAGGCATTGGCTACATGAAAAGGAGCCAATGGGATTGAAAGCTTACAAGGGTTTTGCGGATAGAGGCCGCCGACGAATTGGCGGCGTTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTTTGAAGAATGCATCCCTGTTTATTGTGATCTGTTTTGGATTTTTTGTTTCTTCTAAACGATGATAGTGTAATAGGTTGATGACTGCTTTGAGCTTAATGATAAATTGTTTGTTTTTCTAGTTGTGAAATGAACTCTTGTTGTCCCTTTTATGGGGCGTTTTGCTGGAGGAAGTTCTGTTTTCTGCTTAAATCAATAAAGAAATTAGAGTTGTATTTGTATTA

Coding sequence (CDS)

ATGGGAAGCAGGCTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCCTCTGCTTCCAAAATCGAAATCAAGCGCGTTCTCGAGAGCCTCTACGGGTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGAGAGGCCAAGAGGCATTGGCTACATGAAAAGGAGCCAATGGGATTGAAAGCTTACAAGGGTTTTGCGGATAGAGGCCGCCGACGAATTGGCGGCGTTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

Protein sequence

MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR

Homology

[Close]

BLAST of Tan0013828 vs. ExPASy Swiss-Prot
Match: Q605B4 (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.3e-07
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]

BLAST of Tan0013828 vs. ExPASy Swiss-Prot
Match: Q0I161 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNPLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]

BLAST of Tan0013828 vs. ExPASy Swiss-Prot
Match: A0KF23 (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Tan0013828 vs. ExPASy Swiss-Prot
Match: A4ST04 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Tan0013828 vs. ExPASy Swiss-Prot
Match: Q0ABH3 (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

[Close]

BLAST of Tan0013828 vs. NCBI nr
Match: XP_023531609.1 (uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 hypothetical protein SDJN03_05887, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031291.1 rplW, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKE +GLK YKGFADRGRRRIGG EAVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Tan0013828 vs. NCBI nr
Match: XP_022943267.1 (uncharacterized protein LOC111448049 [Cucurbita moschata])

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKE +GLK YKGFADRGRRRIGG EAVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Tan0013828 vs. NCBI nr
Match: XP_038905477.1 (uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905478.1 uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905479.1 uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905480.1 uncharacterized protein LOC120091488 [Benincasa hispida])

HSP 1 Score: 328.2 bits (840), Expect = 4.4e-86
Identity = 166/173 (95.95%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDK+NMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKKNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEP+GLK YKGFADRGRR IGG E VE STKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRLIGGAETVELSTKFPWSSMRSGR 173

[Close]

BLAST of Tan0013828 vs. NCBI nr
Match: XP_022929525.1 (uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothetical protein SDJN03_24874, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324.3 bits (830), Expect = 6.3e-85
Identity = 162/173 (93.64%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEP+G KAYKGF++R RRR G  E VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Tan0013828 vs. NCBI nr
Match: TYK15876.1 (Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa])

HSP 1 Score: 324.3 bits (830), Expect = 6.3e-85
Identity = 164/174 (94.25%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRI-GGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEP+G+K YKGFADRGRRRI GG E VEPSTKFPWSSMRSGR
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 249

[Close]

BLAST of Tan0013828 vs. ExPASy TrEMBL
Match: A0A6J1FSK6 (uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC111448049 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.2e-87
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKE +GLK YKGFADRGRRRIGG EAVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Tan0013828 vs. ExPASy TrEMBL
Match: A0A5D3CZJ7 (Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00540 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.0e-85
Identity = 164/174 (94.25%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRI-GGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEP+G+K YKGFADRGRRRI GG E VEPSTKFPWSSMRSGR
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 249

[Close]

BLAST of Tan0013828 vs. ExPASy TrEMBL
Match: A0A6J1EUM4 (uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC111436066 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.0e-85
Identity = 162/173 (93.64%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEP+G KAYKGF++R RRR G  E VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Tan0013828 vs. ExPASy TrEMBL
Match: A0A1S3C191 (uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495731 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.0e-85
Identity = 164/174 (94.25%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRI-GGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEP+G+K YKGFADRGRRRI GG E VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Tan0013828 vs. ExPASy TrEMBL
Match: A0A6J1JA70 (uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.0e-85
Identity = 163/173 (94.22%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEP+G KAYKGF+DR RRR G  E VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Tan0013828 vs. TAIR 10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein )

HSP 1 Score: 208.4 bits (529), Expect = 4.7e-54
Identity = 115/175 (65.71%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P++ IEED+++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKRHWLHEKEPMGLKAY-KGFADRGRRRIG----GVEAVEPSTKFPWSSMR 171
           EE + K HWL  KE   +  Y KG   RG  R      G  A   + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

The following BLAST results are available for this feature:

BLAST of Tan0013828 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q605B4	9.3e-07	41.67	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
Q0I161	1.2e-06	42.47	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW...	[more]
A0KF23	1.6e-06	45.76	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]
A4ST04	2.1e-06	45.76	50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rp...	[more]
Q0ABH3	2.1e-06	45.76	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]

BLAST of Tan0013828 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531609.1	1.4e-87	97.11	uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 ...	[more]
XP_022943267.1	1.5e-86	96.53	uncharacterized protein LOC111448049 [Cucurbita moschata]	[more]
XP_038905477.1	4.4e-86	95.95	uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905478.1 unchara...	[more]
XP_022929525.1	6.3e-85	93.64	uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothet...	[more]
TYK15876.1	6.3e-85	94.25	Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]	[more]

BLAST of Tan0013828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSK6	7.2e-87	96.53	uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC1114480...	[more]
A0A5D3CZJ7	3.0e-85	94.25	Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1EUM4	3.0e-85	93.64	uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC1114360...	[more]
A0A1S3C191	3.0e-85	94.25	uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JA70	4.0e-85	94.22	uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116...	[more]

BLAST of Tan0013828 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39880.1	4.7e-54	65.71	Ribosomal protein L23/L15e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..136 e-value: 9.7E-24 score: 86.2
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 29..90 e-value: 1.5E-15 score: 57.3
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 5..172
None	No IPR available	PANTHER	PTHR12059:SF7	BNAC07G51330D PROTEIN	coord: 5..172
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 26..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013828.1	Tan0013828.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:1903857	negative regulation of cytokinin dehydrogenase activity
biological_process	GO:1903070	negative regulation of ER-associated ubiquitin-dependent protein catabolic process
biological_process	GO:0010584	pollen exine formation
biological_process	GO:1902183	regulation of shoot apical meristem development
biological_process	GO:0015789	UDP-N-acetylgalactosamine transmembrane transport
biological_process	GO:1990569	UDP-N-acetylglucosamine transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005463	UDP-N-acetylgalactosamine transmembrane transporter activity