Tan0013783 (gene) Snake gourd v1

Overview
NameTan0013783
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMyb_DNA-bind_3 domain-containing protein
LocationLG10: 67236328 .. 67236813 (+)
RNA-Seq ExpressionTan0013783
SyntenyTan0013783
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTATTCATCGAATGAGGTACCTCCTAACTCTGATGAAGAGAGAGACTTAGAGAGAGACTTTGTTTCATCTGAGGTTCATGTTGAGTTAGTTGTCGATGATGAAGAAACTGAGATCCATGGAGATTGGGGTGAGAAACCTACTCAATCTTCTAAATGTCGTTCAGTTGGCTCATCATTGGATAGTTGTGCTCATAAGACTGCACGAACTGCTCGACAAGTCATTTTGATGATGCTTTAAAAGTATGGACTAAGTCAATGACTGAGGTCTTTTCGAAAATGTGAATTAGAAGCCACCGTATCTAATGCTGAAAAGTATAGCATTGAGGAGTGTATGACCAAGTTAGGCTCTATTTTCGTACTTCCTAACACTGCTTATGTGAAAATATGTGAAAAGTTTGTTTTATATGAGTGGAGAGCAATGTTCATGATCATGTCAGAGGTAAATATTCGAACAATGTTAGGTGTAGACTTCTCTTCTTAA

mRNA sequence

ATGCACTATTCATCGAATGAGGTACCTCCTAACTCTGATGAAGAGAGAGACTTAGAGAGAGACTTTGTTTCATCTGAGGTTCATGTTGAGTTAGTTGTCGATGATGAAGAAACTGAGATCCATGGAGATTGGGGTGAGAAACCTACTCAATCTTCTAAATGTCGTTCAGTTGGCTCATCATTGGATAGTTGTGCTCATAAGACTGCACGAACTGCTCGACAATATAGCATTGAGGAGTGTATGACCAAGTTAGGCTCTATTTTCGTACTTCCTAACACTGCTTATGTGAAAATATGTGAAAAGTTTGTTTTATATGAGTGGAGAGCAATGTTCATGATCATGTCAGAGGTAAATATTCGAACAATGTTAGGTGTAGACTTCTCTTCTTAA

Coding sequence (CDS)

ATGCACTATTCATCGAATGAGGTACCTCCTAACTCTGATGAAGAGAGAGACTTAGAGAGAGACTTTGTTTCATCTGAGGTTCATGTTGAGTTAGTTGTCGATGATGAAGAAACTGAGATCCATGGAGATTGGGGTGAGAAACCTACTCAATCTTCTAAATGTCGTTCAGTTGGCTCATCATTGGATAGTTGTGCTCATAAGACTGCACGAACTGCTCGACAATATAGCATTGAGGAGTGTATGACCAAGTTAGGCTCTATTTTCGTACTTCCTAACACTGCTTATGTGAAAATATGTGAAAAGTTTGTTTTATATGAGTGGAGAGCAATGTTCATGATCATGTCAGAGGTAAATATTCGAACAATGTTAGGTGTAGACTTCTCTTCTTAA

Protein sequence

MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDDEETEIHGDWGEKPTQSSKCRSVGSSLDSCAHKTARTARQYSIEECMTKLGSIFVLPNTAYVKICEKFVLYEWRAMFMIMSEVNIRTMLGVDFSS
Homology
BLAST of Tan0013783 vs. NCBI nr
Match: XP_016651533.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Prunus mume])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 45/149 (30.20%), Postives = 78/149 (52.35%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDDEETEIHGDWGE----------KPTQ 60
           + Y+SN++PPNSDEER+LE +F+++ VH+++ +DD +  +  D G+             +
Sbjct: 247 LRYASNQLPPNSDEERELENNFLNTGVHIDVDLDDNDVNLETDHGKGKRKSVTATPPERR 306

Query: 61  SSKCRSVGSSLDSCA----------------HKTARTARQYSIEECMTKLGSIFVLPNTA 120
           S K   + S L+ C+                  ++ +   YSIEEC+  +  +  + N  
Sbjct: 307 SKKWDKMESYLEVCSEVMSQRLQTIQKEKSVEASSTSKEMYSIEECIGIVEEMGDIDNDT 366

Query: 121 YVKICEKFVLYEWRAMFMIMSEVNIRTML 124
           + K+ EK VL EWR +F+ MS+   R+ L
Sbjct: 367 FNKMLEKIVLIEWRKIFVTMSDARRRSWL 395

BLAST of Tan0013783 vs. NCBI nr
Match: XP_008246059.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Prunus mume])

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-09
Identity = 45/149 (30.20%), Postives = 78/149 (52.35%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDDEETEIHGDWGE----------KPTQ 60
           + Y+SN++PPNSDEER+LE +F+++ VH+++ +DD+   +  D G+             +
Sbjct: 141 LRYASNQLPPNSDEERELENNFLNTGVHIDVDLDDDGFNLETDHGKGKRKSVTATPPERR 200

Query: 61  SSKCRSVGSSLDSCA----------------HKTARTARQYSIEECMTKLGSIFVLPNTA 120
           S K   + S L+ C+                  ++ +   YSIEEC+  +  +  + N  
Sbjct: 201 SKKWDKMESYLEVCSEVMSQRLQTIQKEKSVEASSTSKEMYSIEECIGIVEEMGDIDNDT 260

Query: 121 YVKICEKFVLYEWRAMFMIMSEVNIRTML 124
           + K+ EK VL EWR +F+ MS+   R+ L
Sbjct: 261 FNKMLEKIVLIEWRKIFVTMSDARRRSWL 289

BLAST of Tan0013783 vs. NCBI nr
Match: XP_021827451.1 (L10-interacting MYB domain-containing protein-like [Prunus avium])

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-09
Identity = 44/149 (29.53%), Postives = 76/149 (51.01%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDDEETEIHGDWGE----------KPTQ 60
           + Y+SN++PPNSDEER+LE +F+++ VH+++ +DD+   +  D G+             +
Sbjct: 141 LRYASNQLPPNSDEERELENNFLNTSVHIDVDLDDDGVNLEIDHGKGKRKCVTATPPERR 200

Query: 61  SSKCRSVGSSLDSCA----------------HKTARTARQYSIEECMTKLGSIFVLPNTA 120
             K   + S L+ C+                  ++ +   YSIEEC+  +  +  + N  
Sbjct: 201 PKKWDKMESYLEVCSEVMSQRLQSLQKEKSVEASSTSKEMYSIEECIGLVEEMGDIENDT 260

Query: 121 YVKICEKFVLYEWRAMFMIMSEVNIRTML 124
           + K+ EK VL EWR +F+ MS+   R  L
Sbjct: 261 FNKMLEKIVLVEWRKIFITMSDARRRAWL 289

BLAST of Tan0013783 vs. NCBI nr
Match: XP_008222570.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Prunus mume])

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-09
Identity = 42/123 (34.15%), Postives = 73/123 (59.35%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDDEETEIHGDWGEKPTQSSKCRSVGSS 60
           +HY+S+++PPNSD++R+LE +F+++ VH+++ +DD+        G+KP Q  K +S+ +S
Sbjct: 141 LHYASSQLPPNSDDKRELENNFLNTGVHIDVDLDDD--------GDKP-QLEKEKSLEAS 200

Query: 61  LDSCAHKTARTARQYSIEECMTKLGSIFVLPNTAYVKICEKFVLYEWRAMFMIMSEVNIR 120
                   + +   YSIEEC+    ++  + N  + K+ EK VL EWR +F+ M     R
Sbjct: 201 --------STSKEMYSIEECIEIFETMGDIDNDTFNKMLEKIVLIEWRKIFVTMPAARKR 246

Query: 121 TML 124
             L
Sbjct: 261 AWL 246

BLAST of Tan0013783 vs. NCBI nr
Match: CAB4313924.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDD----EETEIHGDWGEKPT------- 60
           + Y+SN++PPNSDEER+LE +F+++ VH+++ +DD    +ET+ HG    K         
Sbjct: 184 LRYASNQLPPNSDEERELENNFLNTGVHIDVDLDDDGFNQETD-HGKGKRKSVTATPPER 243

Query: 61  QSSKCRSVGSSLDSCA----------------HKTARTARQYSIEECMTKLGSIFVLPNT 120
           +S K   + S L+ C+                  ++ +   YSIEEC+  +  +  + N 
Sbjct: 244 RSKKWDKMESYLEVCSEVMSQRLQTIQKEKSVEASSTSKEMYSIEECIGIVEEMGDIDND 303

Query: 121 AYVKICEKFVLYEWRAMFMIMSEVNIRTML 124
            + K+ EK VL EWR +F+ MS+   R+ L
Sbjct: 304 TFNKMLEKIVLIEWRKIFVTMSDARRRSWL 332

BLAST of Tan0013783 vs. ExPASy TrEMBL
Match: A0A6P5TKC6 (L10-interacting MYB domain-containing protein-like OS=Prunus avium OX=42229 GN=LOC110768071 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-09
Identity = 44/149 (29.53%), Postives = 76/149 (51.01%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDDEETEIHGDWGE----------KPTQ 60
           + Y+SN++PPNSDEER+LE +F+++ VH+++ +DD+   +  D G+             +
Sbjct: 141 LRYASNQLPPNSDEERELENNFLNTSVHIDVDLDDDGVNLEIDHGKGKRKCVTATPPERR 200

Query: 61  SSKCRSVGSSLDSCA----------------HKTARTARQYSIEECMTKLGSIFVLPNTA 120
             K   + S L+ C+                  ++ +   YSIEEC+  +  +  + N  
Sbjct: 201 PKKWDKMESYLEVCSEVMSQRLQSLQKEKSVEASSTSKEMYSIEECIGLVEEMGDIENDT 260

Query: 121 YVKICEKFVLYEWRAMFMIMSEVNIRTML 124
           + K+ EK VL EWR +F+ MS+   R  L
Sbjct: 261 FNKMLEKIVLVEWRKIFITMSDARRRAWL 289

BLAST of Tan0013783 vs. ExPASy TrEMBL
Match: A0A6J5XSA5 (Myb_DNA-bind_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS37637 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-09
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDD----EETEIHGDWGEKPT------- 60
           + Y+SN++PPNSDEER+LE +F+++ VH+++ +DD    +ET+ HG    K         
Sbjct: 184 LRYASNQLPPNSDEERELENNFLNTGVHIDVDLDDDGFNQETD-HGKGKRKSVTATPPER 243

Query: 61  QSSKCRSVGSSLDSCA----------------HKTARTARQYSIEECMTKLGSIFVLPNT 120
           +S K   + S L+ C+                  ++ +   YSIEEC+  +  +  + N 
Sbjct: 244 RSKKWDKMESYLEVCSEVMSQRLQTIQKEKSVEASSTSKEMYSIEECIGIVEEMGDIDND 303

Query: 121 AYVKICEKFVLYEWRAMFMIMSEVNIRTML 124
            + K+ EK VL EWR +F+ MS+   R+ L
Sbjct: 304 TFNKMLEKIVLIEWRKIFVTMSDARRRSWL 332

BLAST of Tan0013783 vs. ExPASy TrEMBL
Match: A0A6P5U4S0 (L10-interacting MYB domain-containing protein-like OS=Prunus avium OX=42229 GN=LOC110773872 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-08
Identity = 45/148 (30.41%), Postives = 81/148 (54.73%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDD--EETEIHGDWGEKPTQS---SKCR 60
           +HY+S+++PPNSD+ER+LE +F+++ VH+++ +DD  +  ++    G++   +    +CR
Sbjct: 120 LHYASSQLPPNSDDERELENNFLNTGVHIDVDLDDDGDNPQLLSGKGKRKCATIAPPECR 179

Query: 61  S-----VGSSLDSCA---------------HKTARTARQYSIEECMTKLGSIFVLPNTAY 120
           S     + S LD C+                 ++ +   YSIEEC+  + ++  + N  +
Sbjct: 180 SKKWDKMESYLDVCSEVMSQKLQREKEKSLEASSTSKEMYSIEECIGIVETMGDVDNNTF 239

Query: 121 VKICEKFVLYEWRAMFMIMSEVNIRTML 124
            K+ EK VL EWR +F+IM     R  L
Sbjct: 240 NKMLEKIVLVEWRKIFVIMPATRRRAWL 267

BLAST of Tan0013783 vs. ExPASy TrEMBL
Match: M5X9B7 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa017630mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDDEETEI---HGDWGEKPTQSSKCRSV 60
           + Y+SN++P NSDEER LE +F++  VH+++  DD+   +   HG    K   ++     
Sbjct: 50  LRYASNQLPLNSDEERKLENNFLNIGVHIDVDSDDDGINLKIDHGKGKRKCVTATPSERH 109

Query: 61  GSSLDSCAHKTARTARQYSIEECMTKLGSIFVLPNTAYVKICEKFVLYEWRAMFMIMSE 117
               D      + +   YSIEEC+  +  +  + N  + K+ EK VL EWR +F+ MS+
Sbjct: 110 PKKWDKILEAFSTSKEMYSIEECIRLVEEMVDIDNDTFNKMLEKIVLIEWRKIFVTMSD 168

BLAST of Tan0013783 vs. ExPASy TrEMBL
Match: A0A6J5W1Z4 (Myb_DNA-bind_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3642 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-08
Identity = 47/161 (29.19%), Postives = 79/161 (49.07%), Query Frame = 0

Query: 1   MHYSSNEVPPNSDEERDLERDFVSSEVHVELVVDDEETEIHGDWGEKPTQSS-----KCR 60
           +HY S+++PPNSD++R++E +F+++EVH+++ +DD+        G+KP   S     KC 
Sbjct: 123 LHYVSSQLPPNSDDKREVENNFLNTEVHIDVDLDDD--------GDKPQLVSSKGKRKCA 182

Query: 61  SVG-------------SSLDSCAHKTAR---------------TARQYSIEECMTKLGSI 120
           +V              S LD C+   ++               +   YSIEEC+  + + 
Sbjct: 183 TVAALERRPKKWDKMESYLDVCSEVMSQKLQRKKEKSLEAFSTSKEMYSIEECIEIVETT 242

Query: 121 FVLPNTAYVKICEKFVLYEWRAMFMIMSEVNIRTMLGVDFS 129
             + N  + K+ EK VL EWR +F+ M     R  L +  S
Sbjct: 243 GDIDNDTFNKMLEKIVLIEWRKIFVTMLAARKRAWLAMSHS 275

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_016651533.11.4e-0930.20PREDICTED: L10-interacting MYB domain-containing protein-like [Prunus mume][more]
XP_008246059.14.2e-0930.20PREDICTED: L10-interacting MYB domain-containing protein-like [Prunus mume][more]
XP_021827451.19.3e-0929.53L10-interacting MYB domain-containing protein-like [Prunus avium][more]
XP_008222570.19.3e-0934.15PREDICTED: L10-interacting MYB domain-containing protein-like [Prunus mume][more]
CAB4313924.11.2e-0832.00unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
A0A6P5TKC64.5e-0929.53L10-interacting MYB domain-containing protein-like OS=Prunus avium OX=42229 GN=L... [more]
A0A6J5XSA55.9e-0932.00Myb_DNA-bind_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDH... [more]
A0A6P5U4S02.2e-0830.41L10-interacting MYB domain-containing protein-like OS=Prunus avium OX=42229 GN=L... [more]
M5X9B72.9e-0832.77Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa017630mg PE=4 SV=1[more]
A0A6J5W1Z46.5e-0829.19Myb_DNA-bind_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDH... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0013783.1Tan0013783.1mRNA