Tan0013754 (gene) Snake gourd v1

Overview


Name	Tan0013754
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotran_gag_3 domain-containing protein
Location	LG01: 116539072 .. 116539602 (-)
RNA-Seq Expression	Tan0013754
Synteny	Tan0013754

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAACACCCAAGAATCCTCGACTTCTCAAGCTCACTCCCCTGTCCTCAAGACTCCTGGACCTGTCCACATCCCAAAAAACCCAAATGCCTACCAGGTGAGATCGGGAGCCATACCGGTAGGCAACCCTTCCTTCACAAATCTCCTCAATCAAGCCACTTCTATCAAGCTTGACCGAAATAACTTCCTAGTATGGCAAAACATTGCTCTTCCATTACTCAGGAGTTACAAACTAGAAGGACATCTTACCGGTGAATCTATCTGTCCTGAAATGTCAATAGTCATCCCTCCGTCTGAAGACGAACCACAAGGTTTACTCCTACCGAATCCAGAGCACGATATTTGGATGGCAGTTGATCAACTACTTATGGGGTGGCTCTATAACTCAATGACCATTGAAGTGGCTTCTCAGGTTACTAGCTGCGGATCATCACAAGAATTATGGGCTGCCTTGCAAGACTTCTATGGAGTCCAATTCAAAAGGATTACCTGTAGAGAATGGTTCAGCAAACCAGGAAAGGAAGTATGA

mRNA sequence

ATGGATAACACCCAAGAATCCTCGACTTCTCAAGCTCACTCCCCTGTCCTCAAGACTCCTGGACCTGTCCACATCCCAAAAAACCCAAATGCCTACCAGGTGAGATCGGGAGCCATACCGGTAGGCAACCCTTCCTTCACAAATCTCCTCAATCAAGCCACTTCTATCAAGCTTGACCGAAATAACTTCCTAGTATGGCAAAACATTGCTCTTCCATTACTCAGGAGTTACAAACTAGAAGGACATCTTACCGGTGAATCTATCTGTCCTGAAATGTCAATAGTCATCCCTCCGTCTGAAGACGAACCACAAGGTTTACTCCTACCGAATCCAGAGCACGATATTTGGATGGCAGTTGATCAACTACTTATGGGGTGGCTCTATAACTCAATGACCATTGAAGTGGCTTCTCAGGTTACTAGCTGCGGATCATCACAAGAATTATGGGCTGCCTTGCAAGACTTCTATGGAGTCCAATTCAAAAGGATTACCTGTAGAGAATGGTTCAGCAAACCAGGAAAGGAAGTATGA

Coding sequence (CDS)

ATGGATAACACCCAAGAATCCTCGACTTCTCAAGCTCACTCCCCTGTCCTCAAGACTCCTGGACCTGTCCACATCCCAAAAAACCCAAATGCCTACCAGGTGAGATCGGGAGCCATACCGGTAGGCAACCCTTCCTTCACAAATCTCCTCAATCAAGCCACTTCTATCAAGCTTGACCGAAATAACTTCCTAGTATGGCAAAACATTGCTCTTCCATTACTCAGGAGTTACAAACTAGAAGGACATCTTACCGGTGAATCTATCTGTCCTGAAATGTCAATAGTCATCCCTCCGTCTGAAGACGAACCACAAGGTTTACTCCTACCGAATCCAGAGCACGATATTTGGATGGCAGTTGATCAACTACTTATGGGGTGGCTCTATAACTCAATGACCATTGAAGTGGCTTCTCAGGTTACTAGCTGCGGATCATCACAAGAATTATGGGCTGCCTTGCAAGACTTCTATGGAGTCCAATTCAAAAGGATTACCTGTAGAGAATGGTTCAGCAAACCAGGAAAGGAAGTATGA

Protein sequence

MDNTQESSTSQAHSPVLKTPGPVHIPKNPNAYQVRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQGLLLPNPEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQELWAALQDFYGVQFKRITCREWFSKPGKEV

Homology

[Close]

BLAST of Tan0013754 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-25
Identity = 64/132 (48.48%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 34  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMS 93
           V SGA+   +P    LLNQ TSIK+DR NFL+WQN+ALP+LRSYKL  +LTG+  CP   
Sbjct: 16  VVSGAV-FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTH 75

Query: 94  IVIPPSEDEPQGLLLP------NPEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQE 153
           +V   +    +G          NP ++ W+ VD+LL+GWLYNSM  +VA QV    +S+E
Sbjct: 76  LVPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRE 135

Query: 154 LWAALQDFYGVQ 160
           LW A+Q+ +GVQ
Sbjct: 136 LWTAVQELFGVQ 146

[Close]

BLAST of Tan0013754 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-25
Identity = 58/130 (44.62%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 34  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMS 93
           + S      NP    +LNQ  S+KLDR N+L+WQ +ALP+L+SYKL+GHLT E+ CP   
Sbjct: 8   IGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQCPPKF 67

Query: 94  IVIPP--SEDEPQGLLLPNPEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQELWAA 153
           I+ P   +          NP+ D W+  D LL+GW+YNSMT EVA Q+    ++++LW A
Sbjct: 68  IINPTCGASSRSTTTKTVNPKFDQWVTFDLLLLGWMYNSMTPEVALQLMGFNTAKDLWEA 127

Query: 154 LQDFYGVQFK 162
           +QD +GVQ +
Sbjct: 128 IQDLFGVQLR 137

[Close]

BLAST of Tan0013754 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 4.5e-22
Identity = 56/141 (39.72%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 34  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMS 93
           V S      NP    LLNQ +S+KLDR N+L+W+ +ALP+++SYK EG+LTGE+ CP   
Sbjct: 8   VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKF 67

Query: 94  IVIPPSEDEPQ----------------GLLLPNPEHDIWMAVDQLLMGWLYNSMTIEVAS 153
           I    +E + +                     NP+ D W+    LL+GW+YNSMT EVA 
Sbjct: 68  ITNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFDQWLTSYLLLLGWIYNSMTTEVAF 127

Query: 154 QVTSCGSSQELWAALQDFYGV 159
           Q+    ++++LW A+QD +GV
Sbjct: 128 QLKGFNTTKDLWEAIQDLFGV 148

[Close]

BLAST of Tan0013754 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 7.7e-22
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 43  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIV--IPPSE 102
           NP    LLNQ +S+KLDR N+L+W+ +ALP+++SYK EGHLTGE+ CP   I   I  S+
Sbjct: 17  NPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQIGESQ 76

Query: 103 DEPQGLL--------------LPNPEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQ 158
            E  G                  NP+ D W+    LL+GW+YNSMT EVA Q+    +++
Sbjct: 77  SEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGWIYNSMTAEVAFQLKGFNTAK 136

[Close]

BLAST of Tan0013754 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-21
Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 43  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPS--- 102
           NP    +LNQ T++KLDR N+L+W+ +ALP+L+ YKLEGHLT E+ CP   ++   S   
Sbjct: 20  NPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVLSASSSNT 79

Query: 103 ---EDEPQGLL---------LPNPEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQE 160
              E+     +         + NP  + W+  D LL+GWLYNSMT +VA Q+    + ++
Sbjct: 80  TVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVED 139

[Close]

BLAST of Tan0013754 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.5e-26
Identity = 64/132 (48.48%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 34  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMS 93
           V SGA+   +P    LLNQ TSIK+DR NFL+WQN+ALP+LRSYKL  +LTG+  CP   
Sbjct: 16  VVSGAV-FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTH 75

Query: 94  IVIPPSEDEPQGLLLP------NPEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQE 153
           +V   +    +G          NP ++ W+ VD+LL+GWLYNSM  +VA QV    +S+E
Sbjct: 76  LVPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRE 135

Query: 154 LWAALQDFYGVQ 160
           LW A+Q+ +GVQ
Sbjct: 136 LWTAVQELFGVQ 146

[Close]

BLAST of Tan0013754 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-22
Identity = 56/141 (39.72%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 34  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMS 93
           V S      NP    LLNQ +S+KLDR N+L+W+ +ALP+++SYK EG+LTGE+ CP   
Sbjct: 8   VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKF 67

Query: 94  IVIPPSEDEPQ----------------GLLLPNPEHDIWMAVDQLLMGWLYNSMTIEVAS 153
           I    +E + +                     NP+ D W+    LL+GW+YNSMT EVA 
Sbjct: 68  ITNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFDQWLTSYLLLLGWIYNSMTTEVAF 127

Query: 154 QVTSCGSSQELWAALQDFYGV 159
           Q+    ++++LW A+QD +GV
Sbjct: 128 QLKGFNTTKDLWEAIQDLFGV 148

[Close]

BLAST of Tan0013754 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 43  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIV--IPPSE 102
           NP    LLNQ +S+KLDR N+L+W+ +ALP+++SYK EGHLTGE+ CP   I   I  S+
Sbjct: 17  NPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQIGESQ 76

Query: 103 DEPQGLL--------------LPNPEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQ 158
            E  G                  NP+ D W+    LL+GW+YNSMT EVA Q+    +++
Sbjct: 77  SEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGWIYNSMTAEVAFQLKGFNTAK 136

[Close]

BLAST of Tan0013754 vs. ExPASy TrEMBL
Match: A0A803PAZ1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 34  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMS 93
           V  G+    N SF N L Q  SIKLDRNN+ +W+N+   ++R ++LEG++ G   CP   
Sbjct: 35  VHFGSGGFSNVSFGNTLTQPFSIKLDRNNYTLWRNLVSTIIRGHRLEGYVNGTKPCPTEF 94

Query: 94  IVIPPSEDEPQGLLLP-NPEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQELWAAL 153
           +  P + +   G  L  NPE++ W+  DQLLMGWLY SMT  +A++V  C S++ LW AL
Sbjct: 95  VGAPGNGENTPGFRLQLNPEYEHWVVCDQLLMGWLYGSMTDSIATKVMGCTSARSLWVAL 154

Query: 154 QDFYG 158
           ++ YG
Sbjct: 155 ENLYG 159

[Close]

BLAST of Tan0013754 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.3e-22
Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 43  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPS--- 102
           NP    +LNQ T++KLDR N+L+W+ +ALP+L+ YKLEGHLT E+ CP   ++   S   
Sbjct: 20  NPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVLSASSSNT 79

Query: 103 ---EDEPQGLL---------LPNPEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQE 160
              E+     +         + NP  + W+  D LL+GWLYNSMT +VA Q+    + ++
Sbjct: 80  TVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVED 139

The following BLAST results are available for this feature:

BLAST of Tan0013754 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013754 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	2.0e-25	48.48	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_031745012.1	4.4e-25	44.62	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]
XP_016901223.1	4.5e-22	39.72	PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]	[more]
TYK02246.1	7.7e-22	43.51	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
XP_016902203.1	1.7e-21	42.42	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]

BLAST of Tan0013754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	9.5e-26	48.48	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S4DZ26	2.2e-22	39.72	uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=...	[more]
A0A5D3BVJ1	3.7e-22	43.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A803PAZ1	3.7e-22	43.20	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A1S4E1U9	8.3e-22	42.42	uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Tan0013754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 52..156
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 52..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013754.1	Tan0013754.1	mRNA