Tan0013744 (gene) Snake gourd v1

Overview
NameTan0013744
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionAnaphase-promoting complex subunit 13
LocationLG05: 26119484 .. 26122462 (-)
RNA-Seq ExpressionTan0013744
SyntenyTan0013744
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAGTTAACCCTTTCCCGCGTCGCGTCGATAGCCCTAACTAAGTCCGTAGAGGCTTATATCGCCGATTGCTCCCCTGACGGCAAGCGGCCAGCCGTAATCTTCTGCAGTGGCTAGCATTCCTTCATTTTTCCGACGGTCTGATTTTCTTTCTCTTCCTTCTTATTTATTCTCTGTTTCTCAGTACTCTGTGTCTTCCCTCTCTTCCTTTCTGCCTCTCCTTCACTGTCTGCTTTTCACGCGATCGCCCCTTTTTCCGTTAAATTTCTTTGTTTGAGTCTTATTACTACTCTTCCACGTATACTTCTCTTATTTCGGGTCTTCAGATCTTAGAAGTGCCGTAGCCCTGTAACAAAATAACGAATGGGTGAACTGAATGGATCTTTGGTTTCACTCTCTCTTTTGCTCTCTGTTTAGTTCGCATGAAAGTACAAAAATGAAGTTTTAAGAATGAATTTGCGTTTTCTATTACTTAATCTGCCATTGTTAATGTTGAAATGCTGTCATATACATATTCCAGATAGTCTTTTTACTTGCCATTCTCCCTCAATTATTACTTTTAAGTTCATTTATTGATTTATTTTGCAGATACGATAGCTCTTCGGTTTGTGTTTAGAATAATTTGTTGGCTATTGTATTTATTTATCCAGGATTTCTTCTTCTTTGAGGATTTGGAGAACTGAGTCTCTATTGTATATATTTTCAATTCTCTCTTAGTGTATCTTGGATTGATTTATACGTTTTGTGTGTCATAGTTTTGAACTTTATGTTAATGTCTTATGTATCTTCATATTTCAGGTATTGGTTTTTAGAATCTCTCTAAGCAAAAAAAACAAAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGGTAATTCTCAGCCTTCATTTCTCTATAGTCAAGAAAGCAATTGTTACAAACTGTCATTGCTTATTTCGTATAGTTGTTCGATCATTATTATAGATCTTCCACTCCCACCAGTGCTGGTTGTTCGGACCGATGACACTGAGGACTCAAGTATGCCTTCTTACTTTTAAGCTCAATGTTAGGAACACATGGAAATAATCTTTCTGTCGATTTTGAGAACACGTTCTAAAATGCAGCATGGACTTGCACTTGATATGAAATTGAATACATGAAGTTTCTGGATATCAGAATACATGAAGTTTCTAAGTTTGGAATCAATGTATTTGCAATGCTATGTGGGAGTTTTCAGAAGTTTGGAGAATGGAAAGTAAGATGCTTCAAAGTCACCTCAAGTGGATGTCTTGGTGGTAAGGACATGGGATGTTTGGAGATAATCTTTAAGATGATGGGTTCAAGTCCTTTATCTGTAAACTTAATAAATTAAGAACTTTTGTTGTCTCTTAGAGCTAGCCTTAAGGTGGGCAAGACCTGTTCAAAAGATTAGAAAGGGTGGGGGATGAGCATAATGCCAGAAATGAGTCCTATACCCTGGTTATCCAAAGGACAAAGAAGAACAAAGCTTCAAAATCTTGTTATGAGAAGTATCTAATCATTCAAATTGTTATTTCCAGTGTTTTCAGGACGTGTAATGCGCTTATCTATATTTCATTGTCAACAACAAGCAAGGCACTCAAATTTCTTTTTCCTTCCTCAGCACTTACCCTTGTTGATTCTTGTTTTACACCTCAACTCTCAAGCTCAACTCAGCCTTTATTTTTCCCTTTTAATTCTTCTTCTTTCTTCTCAATTTCACCTTTTGAATTTTCAACCTCTGAATTTTTGTCCCCGATGTCTTTTCTTCTTTTTTTTCTTCTAGATTTTTCCTTTCTAATATTTTCTTAAAGATATTGCTGGATGTTTTGTGGATTAATGGTTATTATGCAGTTATAAAATTTTTGGAAAAAAGAAAGTAATAGAGAAGGATCTTTAATGACTCTGTTAGTAGGCATGAGCTGAGGGAAGTTGTTTCGTCTCTACATCTTAGTCTCAAGTCTAAGCTTTTTATTTTCCTTTTTTTTAATAATAATTAAGTACGGCTTGTGCAAATTGGAGCTAATTTTAACCTTGTCTAGGTCCTTATCTTAGAAAGTATAGTGTCTTTGTGGACTTCCAAATTTCCCACTTTCCTGTTGCCCCTTTTGTTCCCTTTGTTTAACGTTTCCTATTTTTTATGTTCCCTCTCTCACTTACACACGCTTGCAGCACACAAACTCTCACAAATTAGAATTACTAATGTGTACCGAGCACAAGCATATGACAACTTATTTTTTTTTGGCTTCTAAAATTTAGATGTATTAAGTATTAAATATTTAATGCTTTAATATTTTGTCTCTTATAAATATTGTGAGAGATTATTGTTTTATATAGTTAATTATTTACTTGTCTCTTGCTATATTCAGGCAACATCTATTATGTGATTCTTGCCATAGACAGTCAAGACGAGATCTAGAAAGTTGACACCTAACTGCACTTTTCACTTGAGAAACACTATTCAATACCTAAATGATATGCAAATCTATACGTCGTTTCTCTCTTTTTTTGCCAGTTATAGCTATTTTCAGTAGAAATCATTTTTATCCCCGTTGCCTATCAACTTCTTGGCAGATCAGGAAGCTCAACCAGCTGATGCTGATACTTGGCATGATCTTGCACTTGGTAACCAATGAAGCTTCTCCTAATTTAGAATTGTCTGTTTCCAAGAAATTTGCTTCAAGTTAGAAGTTTTATTATCATATTCTCTTGCTGTATTTGCGTTGTGGATTTCGTATTTCTTTAATCCATGTTGTAGATGCTGAAGTTTGATGTAGAAAGTGCTTCTTTGTGGTAAACGAAAATGGTTTCTTATTGTGTCATCCTATTACGAATTCCAAACTAATGTACTGTTGGTGACCGTCGGTTAAGTACCCCAAATGGATTTGCTGCTCTCTTTTGTAATTGTTTGTGTGGAGACAGATTGAAATGTTGTATAAT

mRNA sequence

TCTAGTTAACCCTTTCCCGCGTCGCGTCGATAGCCCTAACTAAGTCCGTAGAGGCTTATATCGCCGATTGCTCCCCTGACGGCAAGCGGCCAGCCGTAATCTTCTGCAGTGGCTAGCATTCCTTCATTTTTCCGACGGTATTGGTTTTTAGAATCTCTCTAAGCAAAAAAAACAAAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTCCACTCCCACCAGTGCTGGTTGTTCGGACCGATGACACTGAGGACTCAAATCAGGAAGCTCAACCAGCTGATGCTGATACTTGGCATGATCTTGCACTTGGTAACCAATGAAGCTTCTCCTAATTTAGAATTGTCTGTTTCCAAGAAATTTGCTTCAAGTTAGAAGTTTTATTATCATATTCTCTTGCTGTATTTGCGTTGTGGATTTCGTATTTCTTTAATCCATGTTGTAGATGCTGAAGTTTGATGTAGAAAGTGCTTCTTTGTGGTAAACGAAAATGGTTTCTTATTGTGTCATCCTATTACGAATTCCAAACTAATGTACTGTTGGTGACCGTCGGTTAAGTACCCCAAATGGATTTGCTGCTCTCTTTTGTAATTGTTTGTGTGGAGACAGATTGAAATGTTGTATAAT

Coding sequence (CDS)

ATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTCCACTCCCACCAGTGCTGGTTGTTCGGACCGATGACACTGAGGACTCAAATCAGGAAGCTCAACCAGCTGATGCTGATACTTGGCATGATCTTGCACTTGGTAACCAATGA

Protein sequence

MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLALGNQ
Homology
[Close]
BLAST of Tan0013744 vs. ExPASy Swiss-Prot
Match: Q8L981 (Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana OX=3702 GN=APC13 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-22
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
          MAE+SLG+LIDI+DEEWMRDTLP DDLPLPPVL V+TDDTE++NQE Q ADA+TW DLAL
Sbjct: 1  MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEETNQETQQADAETWRDLAL 60

Query: 61 GNQ 64
            Q
Sbjct: 61 DTQ 63

[Close]
BLAST of Tan0013744 vs. NCBI nr
Match: XP_022986653.1 (anaphase-promoting complex subunit 13 [Cucurbita maxima] >XP_023512104.1 anaphase-promoting complex subunit 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 9.2e-26
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
          MAELSLGILIDILDEEWMRDTLPHDDL LPPVLVVRTDDTEDSNQEAQP DADTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDADTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Tan0013744 vs. NCBI nr
Match: XP_022943415.1 (anaphase-promoting complex subunit 13 [Cucurbita moschata])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
          MAELSLGILIDILDEEWMRDTL HDDL LPPVLVVRTDDTEDSNQEAQP DADTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLRHDDLLLPPVLVVRTDDTEDSNQEAQPVDADTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Tan0013744 vs. NCBI nr
Match: XP_038900774.1 (anaphase-promoting complex subunit 13 isoform X4 [Benincasa hispida])

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 59/63 (93.65%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
          MAELSLGILIDILDEEWMRDTLPHDDL LPPVLVVR DDTEDSNQEAQP D DTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRPDDTEDSNQEAQPVDTDTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Tan0013744 vs. NCBI nr
Match: XP_008459198.1 (PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDL LPPVLVVR DDTEDSNQE+QP D DTWHDLAL
Sbjct: 96  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQESQPVDTDTWHDLAL 155

Query: 61  GNQ 64
           GNQ
Sbjct: 156 GNQ 158

[Close]
BLAST of Tan0013744 vs. NCBI nr
Match: XP_022148567.1 (anaphase-promoting complex subunit 13 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
          MAELSLGILID+LDEEWMRDTLPHDDL LPPVLVVRTDDTEDSNQEAQP DAD WHDLAL
Sbjct: 1  MAELSLGILIDVLDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDADAWHDLAL 60

Query: 61 GNQ 64
           NQ
Sbjct: 61 ANQ 63

[Close]
BLAST of Tan0013744 vs. ExPASy TrEMBL
Match: A0A6J1JH61 (Anaphase-promoting complex subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC111484329 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-26
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
          MAELSLGILIDILDEEWMRDTLPHDDL LPPVLVVRTDDTEDSNQEAQP DADTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDADTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Tan0013744 vs. ExPASy TrEMBL
Match: A0A6J1FXS6 (Anaphase-promoting complex subunit 13 OS=Cucurbita moschata OX=3662 GN=LOC111448186 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.9e-25
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
          MAELSLGILIDILDEEWMRDTL HDDL LPPVLVVRTDDTEDSNQEAQP DADTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLRHDDLLLPPVLVVRTDDTEDSNQEAQPVDADTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Tan0013744 vs. ExPASy TrEMBL
Match: A0A6J1D5E8 (Anaphase-promoting complex subunit 13 OS=Momordica charantia OX=3673 GN=LOC111017200 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
          MAELSLGILID+LDEEWMRDTLPHDDL LPPVLVVRTDDTEDSNQEAQP DAD WHDLAL
Sbjct: 1  MAELSLGILIDVLDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDADAWHDLAL 60

Query: 61 GNQ 64
           NQ
Sbjct: 61 ANQ 63

[Close]
BLAST of Tan0013744 vs. ExPASy TrEMBL
Match: A0A1S3CA59 (Anaphase-promoting complex subunit 13 OS=Cucumis melo OX=3656 GN=LOC103498390 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDL LPPVLVVR DDTEDSNQE+QP D DTWHDLAL
Sbjct: 96  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQESQPVDTDTWHDLAL 155

Query: 61  GNQ 64
           GNQ
Sbjct: 156 GNQ 158

[Close]
BLAST of Tan0013744 vs. ExPASy TrEMBL
Match: A0A0A0LNL0 (Anaphase-promoting complex subunit 13 OS=Cucumis sativus OX=3659 GN=Csa_2G437080 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 58/63 (92.06%), Postives = 58/63 (92.06%), Query Frame = 0 

Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDL LPPVLVVR DDTEDSNQE QP D DTWHDLAL
Sbjct: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218

Query: 61  GNQ 64
           GNQ
Sbjct: 219 GNQ 221

[Close]
BLAST of Tan0013744 vs. TAIR 10
Match: AT1G73177.1 (bonsai )

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-23
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLPLPPVLVVRTDDTEDSNQEAQPADADTWHDLAL 60
          MAE+SLG+LIDI+DEEWMRDTLP DDLPLPPVL V+TDDTE++NQE Q ADA+TW DLAL
Sbjct: 1  MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEETNQETQQADAETWRDLAL 60

Query: 61 GNQ 64
            Q
Sbjct: 61 DTQ 63

The following BLAST results are available for this feature:
BLAST of Tan0013744 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L9812.9e-2277.78Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana OX=3702 GN=APC13 P... [more]
BLAST of Tan0013744 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022986653.19.2e-2696.83anaphase-promoting complex subunit 13 [Cucurbita maxima] >XP_023512104.1 anaphas... [more]
XP_022943415.11.0e-2495.24anaphase-promoting complex subunit 13 [Cucurbita moschata][more]
XP_038900774.11.3e-2493.65anaphase-promoting complex subunit 13 isoform X4 [Benincasa hispida][more]
XP_008459198.12.3e-2492.06PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo][more]
XP_022148567.12.3e-2492.06anaphase-promoting complex subunit 13 [Momordica charantia][more]
BLAST of Tan0013744 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JH614.4e-2696.83Anaphase-promoting complex subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC11148432... [more]
A0A6J1FXS64.9e-2595.24Anaphase-promoting complex subunit 13 OS=Cucurbita moschata OX=3662 GN=LOC111448... [more]
A0A6J1D5E81.1e-2492.06Anaphase-promoting complex subunit 13 OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A1S3CA591.1e-2492.06Anaphase-promoting complex subunit 13 OS=Cucumis melo OX=3656 GN=LOC103498390 PE... [more]
A0A0A0LNL01.4e-2492.06Anaphase-promoting complex subunit 13 OS=Cucumis sativus OX=3659 GN=Csa_2G437080... [more]
BLAST of Tan0013744 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G73177.12.0e-2377.78bonsai [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..63
IPR008401Apc13PANTHERPTHR28672ANAPHASE-PROMOTING COMPLEX SUBUNIT 13coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0013744.1Tan0013744.1mRNA
Tan0013744.2Tan0013744.2mRNA
Tan0013744.3Tan0013744.3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007049 cell cycle
biological_process GO:0051301 cell division
biological_process GO:0010229 inflorescence development
biological_process GO:0048827 phyllome development
biological_process GO:0010152 pollen maturation
biological_process GO:0061614 pri-miRNA transcription by RNA polymerase II
biological_process GO:0070979 protein K11-linked ubiquitination
cellular_component GO:0005680 anaphase-promoting complex