Tan0013668 (gene) Snake gourd v1

Overview


Name	Tan0013668
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L35
Location	LG09: 67694647 .. 67697011 (-)
RNA-Seq Expression	Tan0013668
Synteny	Tan0013668

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAAAGAAATCGGAAAAAAAAAAAGCTCCTTCACTTATCCGCACAGGAGGCCGAGTCTAAGGCTCGTAGAGATTGGCAGAAAGAAGAAGAAGAAGAAAGACGAGACGCTTCGAAGCTTTAGTTATGGCATCTGCTTCGACGGCGGTGTCCTTTGGCTTTAGGTTTTCCCCACTGTGCTCCCGCCCATCAGTTCGCGTCTCTCATACTTCCGTCCGGCTCGCTTCGTTCAACAAGGCGAACTCATTGAGGCTCGGTTCCTCCCACAACATTTCCGGGTTTGGAATCGCTCTCCTTCAGAAGCCATGTCACATTGCCGCTCCCAGTTCTCAAGTTCGTTCTCCCCTCACTGTTGTCGCTGCCAAAGGCTACAAAATGAAAACCCACAAGGTTTCTCAATGCCTCTCTTCTCTGTGTATTTTGGGATATTCTTGTATGGTTCAATTCTGGTTGGATTCTGATTAAATTTGAAGTCAATTTCATTCGTCTAGATTGTTTGAATGTGCTTGGTTGCTTTTTTCAATCGAATTTGCAGTAAGATTTAACAATCGTAGGCTGAATTTAAGATACCCAATTCTAGACGCTTACTGAAGGGGCTAATATTGTTAATATTATTTTAAATAATAGGCCCCTCTTTTCTCTGTATTCTACTGGCCTTTTCTCCTTTTGATTTTGATTTGATTGTATGGTGATGCTGGATAGGCTTCGGCAAAGCGATTCAGGGTGACGGGTCGGGGGAAAATTGTTCGGAGGAGAGCAGGAAAGCAGCATTTACTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGGTATGTCTTCGTTGATTATTTTTTTGCTCATGACTGTGTATCTAAATGCTGCATTTCTGAATTTGAGTTTGTTTGATAGAAGTTTTATATTAATTCATCAAAATTTAGCCAATGTAGCCACTATTTTCAATCAGTATGATTCCTCGACACGTTATCCATCAATCTTTTTTTCTTGAATGCAAGTTGTCTTCCAGTTCTACAAAGAATCTTTACCGAAGTTGGAAATTCCTTCATCTATTGATTTGATCCCAATTATATTGTAAACTAATGACATGCATTCCAACTCAATTAAGTTTGTTTTGAAAGCATGATCTAATGTGAAGTTATTCATCAGTTTTCATATTTGGTTCAAACAATAATCCCCAATGCTATCACTGATGGTGATCTTGAAGATTGCCGTAGATCTCGTTTAGGAAAAAACTGATCATAAAATGACTCAGAAAATGATAACCAACTGGTCCAGAAAACTTGATTTCTCCCTAGCATTTTTCTTTTCATGCGGTTAGATTTTAATTTTGAACCTTTCAATTTGTTATAAAAAACAGTAGATACTTGAATGCAAGGGGATTTAAAGGGCGGTTTCTTGTTTCGTTGCTTTTTACTATTTTTCTCTTTTCCAACTTTTTTTTTCGATATCCGTGAGCGTCCACCATGACTTGAACTCATTTCCCAATCCCTTTATTATTCTCTTGACTCTTATTAACCACTCAGTCAACCCATGATAGTTTTTTCCTTTTCGTCTTCCAACTTTAAGCGTGACTCGATTTGGGGCTTTCCTGACACTTCCCTGGGTTGATTTCTTGTAGTCGTAGTGATGGCTGACTCTGTTGATGTTTATGAAAACATCAAAAAGCAGTTAATTTTGTGTCTTTTGTTTAAATTTGATTCTATCTAGATTGTTACTGTCTCGTTGGGTCTTCTGAGTCTTGTATTTTTTTTCTTGGTGGAATTTTGAAGCTTACCCTGTGGGCATATAGATCTTTGCATTTGTATCATGTAACATATGGTTAATGAACGCTTCACCTAGGAATTCTTTTAACAATATATTCATGCATAAGATTTAGTGATTATGAACAAAGTGCCTTGAACATACGGTGATTTGTGACCGTCCCATTGCCAGCGTCATCAATTGACGATACAAAATGAAAGTGAGAAATGGAAATTTGAAAATTGATTTGCTTCACATGTAGTATTGAATAATGACCCCCGGGAGATTTACTATACCAAAATTCTGGTGTTTTGCTTCTCCTGTTGTGTAAGGCAAATTGCTAGTTATATTACTGAGTGTTTTCTTTGATTGGTTTTGGTCTCAACACAGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCATACCTGAAGGTGAATAGGCAGGCTAAGTAGAAGCCATCACCCCACCCCACTAGATCCTTGGCTGTATTGTATTTAGTTTATTTGTAACCAAATGATTTTCAATTTTCCAGAACTCATCAAAGGGAAAAGTTTGATTGTTTAAGAATATTATTTGTCTAAATATATTCCATCAGTTGATAA

mRNA sequence

AAAATAAAGAAATCGGAAAAAAAAAAAGCTCCTTCACTTATCCGCACAGGAGGCCGAGTCTAAGGCTCGTAGAGATTGGCAGAAAGAAGAAGAAGAAGAAAGACGAGACGCTTCGAAGCTTTAGTTATGGCATCTGCTTCGACGGCGGTGTCCTTTGGCTTTAGGTTTTCCCCACTGTGCTCCCGCCCATCAGTTCGCGTCTCTCATACTTCCGTCCGGCTCGCTTCGTTCAACAAGGCGAACTCATTGAGGCTCGGTTCCTCCCACAACATTTCCGGGTTTGGAATCGCTCTCCTTCAGAAGCCATGTCACATTGCCGCTCCCAGTTCTCAAGTTCGTTCTCCCCTCACTGTTGTCGCTGCCAAAGGCTACAAAATGAAAACCCACAAGGCTTCGGCAAAGCGATTCAGGGTGACGGGTCGGGGGAAAATTGTTCGGAGGAGAGCAGGAAAGCAGCATTTACTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCATACCTGAAGGTGAATAGGCAGGCTAAGTAGAAGCCATCACCCCACCCCACTAGATCCTTGGCTGTATTGTATTTAGTTTATTTGTAACCAAATGATTTTCAATTTTCCAGAACTCATCAAAGGGAAAAGTTTGATTGTTTAAGAATATTATTTGTCTAAATATATTCCATCAGTTGATAA

Coding sequence (CDS)

ATGGCATCTGCTTCGACGGCGGTGTCCTTTGGCTTTAGGTTTTCCCCACTGTGCTCCCGCCCATCAGTTCGCGTCTCTCATACTTCCGTCCGGCTCGCTTCGTTCAACAAGGCGAACTCATTGAGGCTCGGTTCCTCCCACAACATTTCCGGGTTTGGAATCGCTCTCCTTCAGAAGCCATGTCACATTGCCGCTCCCAGTTCTCAAGTTCGTTCTCCCCTCACTGTTGTCGCTGCCAAAGGCTACAAAATGAAAACCCACAAGGCTTCGGCAAAGCGATTCAGGGTGACGGGTCGGGGGAAAATTGTTCGGAGGAGAGCAGGAAAGCAGCATTTACTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCATACCTGAAGGTGAATAGGCAGGCTAAGTAG

Protein sequence

MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

Homology

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BLAST of Tan0013668 vs. ExPASy Swiss-Prot
Match: Q8VZ55 (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-34
Identity = 94/152 (61.84%), Postives = 105/152 (69.08%), Query Frame = 0


Query: 1   MASASTA-VSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQK 60
           MAS S A V+  F      S P V +  +SV  A+        L SSH+ISG    L  K
Sbjct: 1   MASLSMASVNVSFCHPLRSSSPKVSL-RSSVHFAT-------SLSSSHSISGLRAVLPLK 60

Query: 61  PCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120
              +A+P+SQ     TV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 152
           RKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 RKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]

BLAST of Tan0013668 vs. ExPASy Swiss-Prot
Match: P23326 (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.3e-32
Identity = 94/158 (59.49%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPL-CSRPSVRVSHT-SVRLASFNK--ANSLRLGSSHNISGF---G 60
           MA AS   +  F+   L  S PS R S    + L  FNK   ++L L SS +IS      
Sbjct: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQP 60

Query: 61  IALLQKPCHIAAPSSQVRSP-LTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHL 120
           I L  K       S    SP  TV AAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHL
Sbjct: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120

Query: 121 LYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 151
           L KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]

BLAST of Tan0013668 vs. ExPASy Swiss-Prot
Match: Q8YRL9 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 83  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 142
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 143 PYL 146
           PYL
Sbjct: 63  PYL 65

[Close]

BLAST of Tan0013668 vs. ExPASy Swiss-Prot
Match: Q3M7I2 (50S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 83  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 142
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 143 PYL 146
           PYL
Sbjct: 63  PYL 65

[Close]

BLAST of Tan0013668 vs. ExPASy Swiss-Prot
Match: B2J0D1 (50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 83  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 142
           K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSKTTLVHERDELNVRLML 62

Query: 143 PYL 146
           PYL
Sbjct: 63  PYL 65

[Close]

BLAST of Tan0013668 vs. NCBI nr
Match: XP_022135558.1 (50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 257.3 bits (656), Expect = 8.3e-65
Identity = 140/153 (91.50%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLA-SFNKANSLRLGSSHNISGFGIALLQK 60
           MASAST VSFG RFSPLCSRPSVRVSH SVRLA SFNK NSLRLGSS NISGFG+ALLQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120
             HI AP+SQV +PLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK
Sbjct: 61  SFHI-APTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120

Query: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]

BLAST of Tan0013668 vs. NCBI nr
Match: XP_023516182.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.5 bits (641), Expect = 4.6e-63
Identity = 133/152 (87.50%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKP 60
           MASAS   SFG RFSPLCSR SVRVS +SVRL S NKA SLRL SSHNIS FG+AL+QKP
Sbjct: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60

Query: 61  CHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
           CHI APSS++R+P TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  CHI-APSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]

BLAST of Tan0013668 vs. NCBI nr
Match: XP_023531155.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62
Identity = 132/152 (86.84%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKP 60
           MAS S AV FG RF+PLCSRPS  VSH+S+RLASFNKANSLRL SSHNISG G+ALLQK 
Sbjct: 1   MASVSAAVVFGLRFTPLCSRPSFHVSHSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60

Query: 61  CHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
           C I AP  QV +PLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  CQI-APRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of Tan0013668 vs. NCBI nr
Match: XP_022933399.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata] >KAG6587802.1 50S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035695.1 50S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.1 bits (632), Expect = 5.0e-62
Identity = 132/152 (86.84%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKP 60
           MASASTA  FG RF+PLCSRPS  VS +S+RLASFNKANSLRL SSHNISG G+ALLQK 
Sbjct: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60

Query: 61  CHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
           C I AP  QV +PLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  CQI-APRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of Tan0013668 vs. NCBI nr
Match: XP_008443834.1 (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 5.0e-62
Identity = 129/152 (84.87%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKP 60
           MASAS AVSFG RFSPLCSRPS RVSHTSV LASFNK NSL+L SSHNISGFG+  LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  CHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            HI +P+SQ+ +P TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR
Sbjct: 61  SHI-SPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           +LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 RLRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of Tan0013668 vs. ExPASy TrEMBL
Match: A0A6J1C550 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.0e-65
Identity = 140/153 (91.50%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLA-SFNKANSLRLGSSHNISGFGIALLQK 60
           MASAST VSFG RFSPLCSRPSVRVSH SVRLA SFNK NSLRLGSS NISGFG+ALLQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120
             HI AP+SQV +PLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK
Sbjct: 61  SFHI-APTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120

Query: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]

BLAST of Tan0013668 vs. ExPASy TrEMBL
Match: A0A6J1EZN8 (50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111440828 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 132/152 (86.84%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKP 60
           MASASTA  FG RF+PLCSRPS  VS +S+RLASFNKANSLRL SSHNISG G+ALLQK 
Sbjct: 1   MASASTAAVFGLRFTPLCSRPSFHVSLSSIRLASFNKANSLRLSSSHNISGVGVALLQKS 60

Query: 61  CHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
           C I AP  QV +PLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  CQI-APRPQVSTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of Tan0013668 vs. ExPASy TrEMBL
Match: A0A1S3B9R8 (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 129/152 (84.87%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKP 60
           MASAS AVSFG RFSPLCSRPS RVSHTSV LASFNK NSL+L SSHNISGFG+  LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  CHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            HI +P+SQ+ +P TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR
Sbjct: 61  SHI-SPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           +LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 RLRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of Tan0013668 vs. ExPASy TrEMBL
Match: A0A6J1JDG6 (50S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 132/152 (86.84%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKP 60
           MASAS +VSFG RFSPLCSR SVRVS  SVRL S NKA SLRL SSHN+S FG+ALLQKP
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60

Query: 61  CHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            HI APSS++ +P TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  FHI-APSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]

BLAST of Tan0013668 vs. ExPASy TrEMBL
Match: A0A0A0LYX0 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 128/152 (84.21%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKP 60
           MASAS AVSFG RFSPLCSRPS RVSHTSV +AS NK NSL+L SSHNISGFG   LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  CHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            HI +P+SQ+R+P TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR
Sbjct: 61  SHI-SPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 153
           +LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of Tan0013668 vs. TAIR 10
Match: AT2G24090.1 (Ribosomal protein L35 )

HSP 1 Score: 147.5 bits (371), Expect = 8.6e-36
Identity = 94/152 (61.84%), Postives = 105/152 (69.08%), Query Frame = 0


Query: 1   MASASTA-VSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQK 60
           MAS S A V+  F      S P V +  +SV  A+        L SSH+ISG    L  K
Sbjct: 1   MASLSMASVNVSFCHPLRSSSPKVSL-RSSVHFAT-------SLSSSHSISGLRAVLPLK 60

Query: 61  PCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTK 120
              +A+P+SQ     TV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 152
           RKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 RKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

The following BLAST results are available for this feature:

BLAST of Tan0013668 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ55	1.2e-34	61.84	50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]
P23326	3.3e-32	59.49	50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P...	[more]
Q8YRL9	4.6e-10	58.73	50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
Q3M7I2	4.6e-10	58.73	50S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]
B2J0D1	5.1e-09	57.14	50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]

BLAST of Tan0013668 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135558.1	8.3e-65	91.50	50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_023516182.1	4.6e-63	87.50	50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_023531155.1	1.0e-62	86.84	50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022933399.1	5.0e-62	86.84	50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata] >KAG6587802.1...	[more]
XP_008443834.1	5.0e-62	84.87	PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo]	[more]

BLAST of Tan0013668 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C550	4.0e-65	91.50	50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV...	[more]
A0A6J1EZN8	2.4e-62	86.84	50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111440828 PE=3 SV=...	[more]
A0A1S3B9R8	2.4e-62	84.87	50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1	[more]
A0A6J1JDG6	3.2e-62	86.84	50S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1	[more]
A0A0A0LYX0	1.0e-60	84.21	50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1	[more]

BLAST of Tan0013668 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24090.1	8.6e-36	61.84	Ribosomal protein L35	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001706	Ribosomal protein L35, non-mitochondrial	PRINTS	PR00064	RIBOSOMALL35	coord: 116..134 score: 37.84 coord: 83..100 score: 61.11 coord: 101..115 score: 48.25
IPR001706	Ribosomal protein L35, non-mitochondrial	TIGRFAM	TIGR00001	TIGR00001	coord: 82..144 e-value: 2.9E-23 score: 79.9
IPR001706	Ribosomal protein L35, non-mitochondrial	PANTHER	PTHR33343	54S RIBOSOMAL PROTEIN BL35M	coord: 1..151
IPR001706	Ribosomal protein L35, non-mitochondrial	HAMAP	MF_00514	Ribosomal_L35	coord: 81..144 score: 15.647649
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 82..138 e-value: 4.1E-20 score: 72.0
IPR037229	Ribosomal protein L35 superfamily	GENE3D	4.10.410.60		coord: 83..145 e-value: 3.1E-20 score: 74.5
IPR037229	Ribosomal protein L35 superfamily	SUPERFAMILY	143034	L35p-like	coord: 82..144
None	No IPR available	PANTHER	PTHR33343:SF3	50S RIBOSOMAL PROTEIN L35	coord: 1..151
IPR018265	Ribosomal protein L35, conserved site	PROSITE	PS00936	RIBOSOMAL_L35	coord: 85..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013668.1	Tan0013668.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome