Tan0013649 (gene) Snake gourd v1

Overview


Name	Tan0013649
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG05: 33260062 .. 33261467 (-)
RNA-Seq Expression	Tan0013649
Synteny	Tan0013649

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTCTTCTAAGAGTTTCTGCCATTCCGCAGAAATGCACGGTAATGAATAAAATAGAGTATAACCTGACTACTCTCCTCAACGAGCTACAGACTTTTGAGTCCCTCATGAAATCAAAAGGAAAAGAGAAGGAGGCAAATGTTGTCACTTCAAAGAAGTTCCTAAGAGGATCATCCTCTGGGACCAAGTCTGGTCCTTCTTTTTCTAAGAATAAGAGTATTCAGAAGAAGAAGAAGAAGGACAAAGGGAAGGGACAGCTCCCACACGCAAAGGCCAAAGCCACGGAAAAATGTTTCCACTGTGGTGCATTTGGCACTGGAAGAGGAACTGCCCGAAATACCTTGCAGAAAAGAAAGCTGAGAAGGAAAACCAAGGTAAATATGATTTACTTGTTGTTGAAACATGTTTAGTGGAACATGATGATTCCGCCTGGATATTAGATTCAGGAGCCACTAACCATGTTTGTTCTTCTTTTCAGGAAACTAGTTCCTGGCAGCAGCTTGCAGATGGGGAGATAACTCTCAGGGTTGGAACGGGAGAGGTTGTCTCAGCCAAAGCGGTGGGAGCAGTGAAGCTGTTGTTTAGAGATAGATTCGTTTTATTAGAAAATGTACTTTTGGTTCCTGGAATCAAAAGAAATCTTGTATCTATCTCTTGTTTGCTTGAACATATGTATAAAGTTTCTTTTAATCATAATGAAGCGTTCATTAGCAAAAGAGGTGTACGAATATGTTCTGCTAAACTTGAAAAAAACTTATACGTGTTAAGACCAACTGAAGTAAAAACTATTTTGAACACTGAAATGTTTAAAACAGCTGATACTCAAAATAAAAGACAGAAACTTTCTCCTAGTACCTATCTTTGGCACTTGAGACTAGGCCACATTAATCTCAATAAGATTGAGAGATTGATCAAGAGTGGTCTCCTAAGTCAGTTAGAGGAAAACTCTTTACCGCCATGTGAGTCCTGTCTCGAAGGAAAAATGACTAAAAGACCTTTTTCTGAAAAAGGTTATAGAGCCAAAGAGCCCTTGGAACTCATCCATTCTGATCTATGTGGTCCTATGAATGTCAAGGCACGAGGAGGGTATGAATACTTCATCAGTTTTATTGATGATTATTCTAGGTATGGCTATCTATACCTAATGCATCATAAGTCCGAAACTCTTGAAAAGTTCAAGAAGTATAAGGCAGAGGTTGAGAACACATTAGGTAAAACAATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGATTTGAGATTCCAAGACTATATGATTGAACATGGAATTGTATCCCAACTCTCAGCGCCTGGTACACCTCAGCAGAATGGTGTATCTGAGAGGAGAAATAGAACCTTGTTAGACATGGTTCGATCTTTGATGAGCTATCTTTGA

mRNA sequence

ATGGAATCTCTTCTAAGAGTTTCTGCCATTCCGCAGAAATGCACGGTAATGAATAAAATAGAGTATAACCTGACTACTCTCCTCAACGAGCTACAGACTTTTGAGTCCCTCATGAAATCAAAAGGAAAAGAGAAGGAGGCAAATGTTGTCACTTCAAAGAAGTTCCTAAGAGGATCATCCTCTGGGACCAAGTCTGGTCCTTCTTTTTCTAAGAATAAGAGTATTCAGAAGAAGAAGAAGAAGGACAAAGGGAAGGGACAGCTCCCACACGCAAAGGCCAAAGCCACGGAAAAATGTTTCCACTGTGGTGCATTTGGCACTGGAAGAGGAACTGCCCGAAATACCTTGCAGAAAAGAAAGCTGAGAAGGAAAACCAAGGAAACTAGTTCCTGGCAGCAGCTTGCAGATGGGGAGATAACTCTCAGGGTTGGAACGGGAGAGGTTGTCTCAGCCAAAGCGGTGGGAGCAGTGAAGCTGTTGTTTAGAGATAGATTCGTTTTATTAGAAAATGTACTTTTGGTTCCTGGAATCAAAAGAAATCTTGTATCTATCTCTTGTTTGCTTGAACATATGTATAAAGTTTCTTTTAATCATAATGAAGCGTTCATTAGCAAAAGAGGTGTACGAATATGTTCTGCTAAACTTGAAAAAAACTTATACGTGTTAAGACCAACTGAAGTAAAAACTATTTTGAACACTGAAATGTTTAAAACAGCTGATACTCAAAATAAAAGACAGAAACTTTCTCCTAGTACCTATCTTTGGCACTTGAGACTAGGCCACATTAATCTCAATAAGATTGAGAGATTGATCAAGAGTGGTCTCCTAAGTCAGTTAGAGGAAAACTCTTTACCGCCATGTGAGTCCTGTCTCGAAGGAAAAATGACTAAAAGACCTTTTTCTGAAAAAGGTTATAGAGCCAAAGAGCCCTTGGAACTCATCCATTCTGATCTATGTGGTCCTATGAATGTCAAGGCACGAGGAGGGTATGAATACTTCATCAGTTTTATTGATGATTATTCTAGGTATGGCTATCTATACCTAATGCATCATAAGTCCGAAACTCTTGAAAAGTTCAAGAAGTATAAGGCAGAGGTTGAGAACACATTAGGTAAAACAATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGATTTGAGATTCCAAGACTATATGATTGAACATGGAATTGTATCCCAACTCTCAGCGCCTGGTACACCTCAGCAGAATGGTGTATCTGAGAGGAGAAATAGAACCTTGTTAGACATGGTTCGATCTTTGATGAGCTATCTTTGA

Coding sequence (CDS)

ATGGAATCTCTTCTAAGAGTTTCTGCCATTCCGCAGAAATGCACGGTAATGAATAAAATAGAGTATAACCTGACTACTCTCCTCAACGAGCTACAGACTTTTGAGTCCCTCATGAAATCAAAAGGAAAAGAGAAGGAGGCAAATGTTGTCACTTCAAAGAAGTTCCTAAGAGGATCATCCTCTGGGACCAAGTCTGGTCCTTCTTTTTCTAAGAATAAGAGTATTCAGAAGAAGAAGAAGAAGGACAAAGGGAAGGGACAGCTCCCACACGCAAAGGCCAAAGCCACGGAAAAATGTTTCCACTGTGGTGCATTTGGCACTGGAAGAGGAACTGCCCGAAATACCTTGCAGAAAAGAAAGCTGAGAAGGAAAACCAAGGAAACTAGTTCCTGGCAGCAGCTTGCAGATGGGGAGATAACTCTCAGGGTTGGAACGGGAGAGGTTGTCTCAGCCAAAGCGGTGGGAGCAGTGAAGCTGTTGTTTAGAGATAGATTCGTTTTATTAGAAAATGTACTTTTGGTTCCTGGAATCAAAAGAAATCTTGTATCTATCTCTTGTTTGCTTGAACATATGTATAAAGTTTCTTTTAATCATAATGAAGCGTTCATTAGCAAAAGAGGTGTACGAATATGTTCTGCTAAACTTGAAAAAAACTTATACGTGTTAAGACCAACTGAAGTAAAAACTATTTTGAACACTGAAATGTTTAAAACAGCTGATACTCAAAATAAAAGACAGAAACTTTCTCCTAGTACCTATCTTTGGCACTTGAGACTAGGCCACATTAATCTCAATAAGATTGAGAGATTGATCAAGAGTGGTCTCCTAAGTCAGTTAGAGGAAAACTCTTTACCGCCATGTGAGTCCTGTCTCGAAGGAAAAATGACTAAAAGACCTTTTTCTGAAAAAGGTTATAGAGCCAAAGAGCCCTTGGAACTCATCCATTCTGATCTATGTGGTCCTATGAATGTCAAGGCACGAGGAGGGTATGAATACTTCATCAGTTTTATTGATGATTATTCTAGGTATGGCTATCTATACCTAATGCATCATAAGTCCGAAACTCTTGAAAAGTTCAAGAAGTATAAGGCAGAGGTTGAGAACACATTAGGTAAAACAATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGATTTGAGATTCCAAGACTATATGATTGAACATGGAATTGTATCCCAACTCTCAGCGCCTGGTACACCTCAGCAGAATGGTGTATCTGAGAGGAGAAATAGAACCTTGTTAGACATGGTTCGATCTTTGATGAGCTATCTTTGA

Protein sequence

MESLLRVSAIPQKCTVMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTSKKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEKCFHCGAFGTGRGTARNTLQKRKLRRKTKETSSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSYL

Homology

[Close]

BLAST of Tan0013649 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.2e-40
Identity = 91/265 (34.34%), Postives = 147/265 (55.47%), Query Frame = 0


Query: 166 VLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPT 225
           ++L++V  VP ++ NL+S   L    Y+  F + +  ++K  + I        LY     
Sbjct: 348 LVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAE 407

Query: 226 EVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLLSQLEENSLP 285
             +  LN    +             S  LWH R+GH++   ++ L K  L+S  +  ++ 
Sbjct: 408 ICQGELNAAQDEI------------SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVK 467

Query: 286 PCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGY 345
           PC+ CL GK  +  F     R    L+L++SD+CGPM +++ GG +YF++FIDD SR  +
Sbjct: 468 PCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLW 527

Query: 346 LYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSA 405
           +Y++  K +  + F+K+ A VE   G+ +K LRSD GGEY    F++Y   HGI  + + 
Sbjct: 528 VYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTV 587

Query: 406 PGTPQQNGVSERRNRTLLDMVRSLM 431
           PGTPQ NGV+ER NRT+++ VRS++
Sbjct: 588 PGTPQHNGVAERMNRTIVEKVRSML 600

[Close]

BLAST of Tan0013649 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-28
Identity = 89/293 (30.38%), Postives = 139/293 (47.44%), Query Frame = 0


Query: 146 GEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISK 205
           GE + A   G V+L   D  + LE+VL       NL+S+  L E    + F+ +   ISK
Sbjct: 324 GEFIYATKRGIVRLR-NDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISK 383

Query: 206 RGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLN 265
            G+ +      KN  +L    V   +N + +          K   +  LWH R GHI+  
Sbjct: 384 NGLMVV-----KNSGMLNNVPV---INFQAYSI------NAKHKNNFRLWHERFGHISDG 443

Query: 266 KIERLIKSGLLSQLE-----ENSLPPCESCLEGKMTKRPFSEKGYRA--KEPLELIHSDL 325
           K+  + +  + S        E S   CE CL GK  + PF +   +   K PL ++HSD+
Sbjct: 444 KLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDV 503

Query: 326 CGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLR 385
           CGP+         YF+ F+D ++ Y   YL+ +KS+    F+ + A+ E      +  L 
Sbjct: 504 CGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLY 563

Query: 386 SDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMS 432
            D G EY+    + + ++ GI   L+ P TPQ NGVSER  RT+ +  R+++S
Sbjct: 564 IDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVS 601

[Close]

BLAST of Tan0013649 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.3e-28
Identity = 93/310 (30.00%), Postives = 147/310 (47.42%), Query Frame = 0


Query: 130 SWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLE 189
           S+ Q   G   + +  G  +     G+  L    R + L  VL VP I +NL+S+  L  
Sbjct: 328 SFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCN 387

Query: 190 ------HMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQN 249
                   +  SF   +      GV +   K +  LY      + +     MF +  ++ 
Sbjct: 388 TNRVSVEFFPASFQVKDL---NTGVPLLQGKTKDELY---EWPIASSQAVSMFASPCSKA 447

Query: 250 KRQKLSPSTYLWHLRLGHINLNKIERLIKSGLLSQLE-ENSLPPCESCLEGKMTKRPFSE 309
                      WH RLGH +L  +  +I +  L  L   + L  C  C   K  K PFS 
Sbjct: 448 THSS-------WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSN 507

Query: 310 KGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKY 369
               + +PLE I+SD+     + +   Y Y++ F+D ++RY +LY +  KS+  + F  +
Sbjct: 508 STITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIF 567

Query: 370 KAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTL 429
           K+ VEN     I TL SD GGE++ LR  DY+ +HGI    S P TP+ NG+SER++R +
Sbjct: 568 KSLVENRFQTRIGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHI 621

Query: 430 LDMVRSLMSY 433
           ++M  +L+S+
Sbjct: 628 VEMGLTLLSH 621

[Close]

BLAST of Tan0013649 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.1e-27
Identity = 93/314 (29.62%), Postives = 144/314 (45.86%), Query Frame = 0


Query: 130 SWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLE 189
           S  Q   G   + V  G  +     G+  L  + R + L N+L VP I +NL+S+  L  
Sbjct: 349 SLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCN 408

Query: 190 ------HMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQN 249
                   +  SF   +      GV +   K +  LY               +  A +Q 
Sbjct: 409 ANGVSVEFFPASFQVKDL---NTGVPLLQGKTKDELY--------------EWPIASSQP 468

Query: 250 KRQKLSPSTYL----WHLRLGHINLNKIERLIKSGLLSQLE-ENSLPPCESCLEGKMTKR 309
                SPS+      WH RLGH   + +  +I +  LS L   +    C  CL  K  K 
Sbjct: 469 VSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKV 528

Query: 310 PFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEK 369
           PFS+    +  PLE I+SD+     + +   Y Y++ F+D ++RY +LY +  KS+  E 
Sbjct: 529 PFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKET 588

Query: 370 FKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERR 429
           F  +K  +EN     I T  SD GGE++ L   +Y  +HGI    S P TP+ NG+SER+
Sbjct: 589 FITFKNLLENRFQTRIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERK 642

Query: 430 NRTLLDMVRSLMSY 433
           +R +++   +L+S+
Sbjct: 649 HRHIVETGLTLLSH 642

[Close]

BLAST of Tan0013649 vs. ExPASy Swiss-Prot
Match: Q07791 (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR3 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-20
Identity = 83/311 (26.69%), Postives = 141/311 (45.34%), Query Frame = 0


Query: 136 DGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVS 195
           + EI +     + +   A+G +   F++        L  P I  +L+S+S L        
Sbjct: 477 NSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITAC 536

Query: 196 FNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFK-TADTQNKRQKLSPSTY- 255
           F  N    S  G  +       + Y L     K ++ + + K T +  NK + ++   Y 
Sbjct: 537 FTRNTLERSD-GTVLAPIVKHGDFYWL---SKKYLIPSHISKLTINNVNKSKSVNKYPYP 596

Query: 256 LWHLRLGHINLNKIERLIKSGLLSQLEENSLP-------PCESCLEGKMTKRPFSEKGYR 315
           L H  LGH N   I++ +K   ++ L+E+ +         C  CL GK TK     KG R
Sbjct: 597 LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHI-KGSR 656

Query: 316 AK-----EPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSE--TLEKF 375
            K     EP + +H+D+ GP++   +    YFISF D+ +R+ ++Y +H + E   L  F
Sbjct: 657 LKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVF 716

Query: 376 KKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRN 431
               A ++N     +  ++ DRG EY +     +    GI +  +     + +GV+ER N
Sbjct: 717 TSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLN 776

[Close]

BLAST of Tan0013649 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 537.0 bits (1382), Expect = 1.5e-148
Identity = 285/456 (62.50%), Postives = 344/456 (75.44%), Query Frame = 0


Query: 17  MNKIEYNLTTLLNELQTFESLMKSKGKEKEANV-VTSKKFLRGSSSGTKSGPSFSKNKSI 76
           +NKIE+NLTTLLNELQ F++L  SKGKE EANV VT +KF+RGSSS  K GPS       
Sbjct: 175 LNKIEFNLTTLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPS------- 234

Query: 77  QKKKKKDKGKGQLPH-AKAKATE---KCFHCGAFGTGRGTARNTLQKRKLRRKT------ 136
            K + K KGKG+ P+ +K K      KCFHC   G  +      L ++K  + T      
Sbjct: 235 -KAQMKKKGKGKAPNTSKVKKNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQGKYDL 294

Query: 137 -----------------------------KETSSWQQLADGEITLRVGTGEVVSAKAVGA 196
                                        +ETSSW++L +GEITL+VGTGEVVSA+AVG 
Sbjct: 295 LVVETCLVECDASTWILDSGATNHICFSFQETSSWKKLKEGEITLKVGTGEVVSAEAVGD 354

Query: 197 VKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLE 256
           + L F+DR+++L++VL VP +KRNL+SI+C+LEH+Y +SF  NE FI  +G++ICSA  E
Sbjct: 355 LTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKGIQICSAIRE 414

Query: 257 KNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLL 316
            NLY LRPT    +LNTEMF+T +TQNK+QK+S + YLWHLRLGHINLN+IERL+KSG+L
Sbjct: 415 NNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGIL 474

Query: 317 SQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISF 376
           +QLE+NSLPPCESCLEGKMTKR F+ KG RAK PLEL+HSDLCGPMNVKARGGYEYFISF
Sbjct: 475 NQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISF 534

Query: 377 IDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIE 433
           IDD+SRYG++YL+HHKSE+ EKFK+YKAEVEN +GKTIKTLRSDRGGEYMD +FQDY+IE
Sbjct: 535 IDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIE 594

[Close]

BLAST of Tan0013649 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 535.4 bits (1378), Expect = 4.5e-148
Identity = 297/460 (64.57%), Postives = 342/460 (74.35%), Query Frame = 0


Query: 16  VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKS 75
           VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK 
Sbjct: 173 VMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 232

Query: 76  IQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGTGRGTARNTLQKRKLRRKTK- 135
            +KKK     K  L  A AK T+K       CFHC   G  +      L ++K  ++ K 
Sbjct: 233 WKKKKGGQGNKANL--AAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKY 292

Query: 136 -----ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAV 195
                ET                           SSW+QL  GE+T+RVGTG VVSA AV
Sbjct: 293 DLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 352

Query: 196 GAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAK 255
           G ++L  +  F+LLENV +VP +KRNL+S+ CLLE  Y ++FN N+ FI K GV ICSAK
Sbjct: 353 GGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAK 412

Query: 256 LEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK 315
           LE NLYVLR    K +LNTEMFKTA TQNKR K+SP  + +LWHLRLGHINLN+IERL+K
Sbjct: 413 LENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVK 472

Query: 316 SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEY 375
           +GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EY
Sbjct: 473 NGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEY 532

Query: 376 FISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQD 433
           FI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L KTIKT RSDRGGEYMDL+FQ+
Sbjct: 533 FITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQN 592

[Close]

BLAST of Tan0013649 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 535.4 bits (1378), Expect = 4.5e-148
Identity = 297/460 (64.57%), Postives = 342/460 (74.35%), Query Frame = 0


Query: 16  VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKS 75
           VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK 
Sbjct: 174 VMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

Query: 76  IQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGTGRGTARNTLQKRKLRRKTK- 135
            +KKK     K  L  A AK T+K       CFHC   G  +      L ++K  ++ K 
Sbjct: 234 WKKKKGGQGNKANL--AAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKY 293

Query: 136 -----ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAV 195
                ET                           SSW+QL  GE+T+RVGTG VVSA AV
Sbjct: 294 DLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 353

Query: 196 GAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAK 255
           G ++L  +  F+LLENV +VP +KRNL+S+ CLLE  Y ++FN N+ FI K GV ICSAK
Sbjct: 354 GGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAK 413

Query: 256 LEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK 315
           LE NLYVLR    K +LNTEMFKTA TQNKR K+SP  + +LWHLRLGHINLN+IERL+K
Sbjct: 414 LENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVK 473

Query: 316 SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEY 375
           +GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EY
Sbjct: 474 NGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEY 533

Query: 376 FISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQD 433
           FI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L KTIKT RSDRGGEYMDL+FQ+
Sbjct: 534 FITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQN 593

[Close]

BLAST of Tan0013649 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 535.4 bits (1378), Expect = 4.5e-148
Identity = 297/460 (64.57%), Postives = 342/460 (74.35%), Query Frame = 0


Query: 16  VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKS 75
           VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK 
Sbjct: 174 VMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

Query: 76  IQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGTGRGTARNTLQKRKLRRKTK- 135
            +KKK     K  L  A AK T+K       CFHC   G  +      L ++K  ++ K 
Sbjct: 234 WKKKKGGQGNKANL--AAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKY 293

Query: 136 -----ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAV 195
                ET                           SSW+QL  GE+T+RVGTG VVSA AV
Sbjct: 294 DLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 353

Query: 196 GAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAK 255
           G ++L  +  F+LLENV +VP +KRNL+S+ CLLE  Y ++FN N+ FI K GV ICSAK
Sbjct: 354 GGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAK 413

Query: 256 LEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK 315
           LE NLYVLR    K +LNTEMFKTA TQNKR K+SP  + +LWHLRLGHINLN+IERL+K
Sbjct: 414 LENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVK 473

Query: 316 SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEY 375
           +GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EY
Sbjct: 474 NGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEY 533

Query: 376 FISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQD 433
           FI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L KTIKT RSDRGGEYMDL+FQ+
Sbjct: 534 FITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQN 593

[Close]

BLAST of Tan0013649 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 535.4 bits (1378), Expect = 4.5e-148
Identity = 297/460 (64.57%), Postives = 342/460 (74.35%), Query Frame = 0


Query: 16  VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKS 75
           VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK 
Sbjct: 174 VMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

Query: 76  IQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGTGRGTARNTLQKRKLRRKTK- 135
            +KKK     K  L  A AK T+K       CFHC   G  +      L ++K  ++ K 
Sbjct: 234 WKKKKGGQGNKANL--AAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKY 293

Query: 136 -----ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAV 195
                ET                           SSW+QL  GE+T+RVGTG VVSA AV
Sbjct: 294 DLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 353

Query: 196 GAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAK 255
           G ++L  +  F+LLENV +VP +KRNL+S+ CLLE  Y ++FN N+ FI K GV ICSAK
Sbjct: 354 GGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAK 413

Query: 256 LEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK 315
           LE NLYVLR    K +LNTEMFKTA TQNKR K+SP  + +LWHLRLGHINLN+IERL+K
Sbjct: 414 LENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVK 473

Query: 316 SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEY 375
           +GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EY
Sbjct: 474 NGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEY 533

Query: 376 FISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQD 433
           FI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L KTIKT RSDRGGEYMDL+FQ+
Sbjct: 534 FITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQN 593

[Close]

BLAST of Tan0013649 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 7.5e-149
Identity = 285/456 (62.50%), Postives = 344/456 (75.44%), Query Frame = 0


Query: 17  MNKIEYNLTTLLNELQTFESLMKSKGKEKEANV-VTSKKFLRGSSSGTKSGPSFSKNKSI 76
           +NKIE+NLTTLLNELQ F++L  SKGKE EANV VT +KF+RGSSS  K GPS       
Sbjct: 175 LNKIEFNLTTLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPS------- 234

Query: 77  QKKKKKDKGKGQLPH-AKAKATE---KCFHCGAFGTGRGTARNTLQKRKLRRKT------ 136
            K + K KGKG+ P+ +K K      KCFHC   G  +      L ++K  + T      
Sbjct: 235 -KAQMKKKGKGKAPNTSKVKKNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQGKYDL 294

Query: 137 -----------------------------KETSSWQQLADGEITLRVGTGEVVSAKAVGA 196
                                        +ETSSW++L +GEITL+VGTGEVVSA+AVG 
Sbjct: 295 LVVETCLVECDASTWILDSGATNHICFSFQETSSWKKLKEGEITLKVGTGEVVSAEAVGD 354

Query: 197 VKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLE 256
           + L F+DR+++L++VL VP +KRNL+SI+C+LEH+Y +SF  NE FI  +G++ICSA  E
Sbjct: 355 LTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKGIQICSAIRE 414

Query: 257 KNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLL 316
            NLY LRPT    +LNTEMF+T +TQNK+QK+S + YLWHLRLGHINLN+IERL+KSG+L
Sbjct: 415 NNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGIL 474

Query: 317 SQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISF 376
           +QLE+NSLPPCESCLEGKMTKR F+ KG RAK PLEL+HSDLCGPMNVKARGGYEYFISF
Sbjct: 475 NQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISF 534

Query: 377 IDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIE 433
           IDD+SRYG++YL+HHKSE+ EKFK+YKAEVEN +GKTIKTLRSDRGGEYMD +FQDY+IE
Sbjct: 535 IDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIE 594

[Close]

BLAST of Tan0013649 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 2.2e-148
Identity = 297/460 (64.57%), Postives = 342/460 (74.35%), Query Frame = 0


Query: 16  VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKS 75
           VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK 
Sbjct: 174 VMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

Query: 76  IQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGTGRGTARNTLQKRKLRRKTK- 135
            +KKK     K  L  A AK T+K       CFHC   G  +      L ++K  ++ K 
Sbjct: 234 WKKKKGGQGNKANL--AAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKY 293

Query: 136 -----ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAV 195
                ET                           SSW+QL  GE+T+RVGTG VVSA AV
Sbjct: 294 DLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 353

Query: 196 GAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAK 255
           G ++L  +  F+LLENV +VP +KRNL+S+ CLLE  Y ++FN N+ FI K GV ICSAK
Sbjct: 354 GGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAK 413

Query: 256 LEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK 315
           LE NLYVLR    K +LNTEMFKTA TQNKR K+SP  + +LWHLRLGHINLN+IERL+K
Sbjct: 414 LENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVK 473

Query: 316 SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEY 375
           +GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EY
Sbjct: 474 NGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEY 533

Query: 376 FISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQD 433
           FI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L KTIKT RSDRGGEYMDL+FQ+
Sbjct: 534 FITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQN 593

[Close]

BLAST of Tan0013649 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 2.2e-148
Identity = 297/460 (64.57%), Postives = 342/460 (74.35%), Query Frame = 0


Query: 16  VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKS 75
           VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK 
Sbjct: 174 VMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

Query: 76  IQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGTGRGTARNTLQKRKLRRKTK- 135
            +KKK     K  L  A AK T+K       CFHC   G  +      L ++K  ++ K 
Sbjct: 234 WKKKKGGQGNKANL--AAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKY 293

Query: 136 -----ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAV 195
                ET                           SSW+QL  GE+T+RVGTG VVSA AV
Sbjct: 294 DLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 353

Query: 196 GAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAK 255
           G ++L  +  F+LLENV +VP +KRNL+S+ CLLE  Y ++FN N+ FI K GV ICSAK
Sbjct: 354 GGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAK 413

Query: 256 LEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK 315
           LE NLYVLR    K +LNTEMFKTA TQNKR K+SP  + +LWHLRLGHINLN+IERL+K
Sbjct: 414 LENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVK 473

Query: 316 SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEY 375
           +GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EY
Sbjct: 474 NGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEY 533

Query: 376 FISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQD 433
           FI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L KTIKT RSDRGGEYMDL+FQ+
Sbjct: 534 FITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQN 593

[Close]

BLAST of Tan0013649 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 2.2e-148
Identity = 297/460 (64.57%), Postives = 342/460 (74.35%), Query Frame = 0


Query: 16  VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKS 75
           VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK 
Sbjct: 291 VMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 350

Query: 76  IQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGTGRGTARNTLQKRKLRRKTK- 135
            +KKK     K  L  A AK T+K       CFHC   G  +      L ++K  ++ K 
Sbjct: 351 WKKKKGGQGNKANL--AAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKY 410

Query: 136 -----ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAV 195
                ET                           SSW+QL  GE+T+RVGTG VVSA AV
Sbjct: 411 DLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 470

Query: 196 GAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAK 255
           G ++L  +  F+LLENV +VP +KRNL+S+ CLLE  Y ++FN N+ FI K GV ICSAK
Sbjct: 471 GGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAK 530

Query: 256 LEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK 315
           LE NLYVLR    K +LNTEMFKTA TQNKR K+SP  + +LWHLRLGHINLN+IERL+K
Sbjct: 531 LENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVK 590

Query: 316 SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEY 375
           +GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EY
Sbjct: 591 NGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEY 650

Query: 376 FISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQD 433
           FI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L KTIKT RSDRGGEYMDL+FQ+
Sbjct: 651 FITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQN 710

[Close]

BLAST of Tan0013649 vs. ExPASy TrEMBL
Match: A0A5D3DS88 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G001000 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 2.2e-148
Identity = 297/460 (64.57%), Postives = 342/460 (74.35%), Query Frame = 0


Query: 16  VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKS 75
           VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK 
Sbjct: 174 VMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

Query: 76  IQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGTGRGTARNTLQKRKLRRKTK- 135
            +KKK     K  L  A AK T+K       CFHC   G  +      L ++K  ++ K 
Sbjct: 234 WKKKKGGQGNKANL--AAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKY 293

Query: 136 -----ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAV 195
                ET                           SSW+QL  GE+T+RVGTG VVSA AV
Sbjct: 294 DLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 353

Query: 196 GAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAK 255
           G ++L  +  F+LLENV +VP +KRNL+S+ CLLE  Y ++FN N+ FI K GV ICSAK
Sbjct: 354 GGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNGVEICSAK 413

Query: 256 LEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK 315
           LE NLYVLR    K +LNTEMFKTA TQNKR K+SP  + +LWHLRLGHINLN+IERL+K
Sbjct: 414 LENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLNRIERLVK 473

Query: 316 SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEY 375
           +GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EY
Sbjct: 474 NGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVKARGGFEY 533

Query: 376 FISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQD 433
           FI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L KTIKT RSDRGGEYMDL+FQ+
Sbjct: 534 FITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEYMDLKFQN 593

[Close]

BLAST of Tan0013649 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.5 bits (153), Expect = 4.7e-10
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 243 NKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLLSQLEENSLPPCESCLEGKMTKRPFSE 302
           N  +     T LWH RL H++   +E L+K G L   + +SL  CE C+ GK  +  FS 
Sbjct: 60  NLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFST 119

Query: 303 KGYRAKEPLELIHSDLCGPMNV 325
             +  K PL+ +HSDL G  +V
Sbjct: 120 GQHTTKNPLDYVHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Tan0013649 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.2e-40	34.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.3e-28	30.38	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	6.3e-28	30.00	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.1e-27	29.62	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q07791	2.2e-20	26.69	Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Tan0013649 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.5e-148	62.50	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0048404.1	4.5e-148	64.57	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	4.5e-148	64.57	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	4.5e-148	64.57	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	4.5e-148	64.57	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]

BLAST of Tan0013649 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	7.5e-149	62.50	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7SMH8	2.2e-148	64.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	2.2e-148	64.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	2.2e-148	64.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5D3DS88	2.2e-148	64.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00100...	[more]

BLAST of Tan0013649 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	4.7e-10	37.80	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 303..432 e-value: 2.8E-31 score: 110.3
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 308..409 e-value: 9.1E-12 score: 45.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 306..433 score: 21.229721
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 246..295 e-value: 3.9E-13 score: 49.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 305..430
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 305..430
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 305..432

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013649.1	Tan0013649.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding