Tan0013544 (gene) Snake gourd v1

Overview


Name	Tan0013544
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase V subunit 5A
Location	LG10: 42704374 .. 42724731 (-)
RNA-Seq Expression	Tan0013544
Synteny	Tan0013544

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGAAGTTCTATTCTCGGAGAGAGAGCGAGAATGGAGGAAGATGGGTTTGACGGAGAACCGAATCGAGTGGAGCTAGGCACTTGCTTGAGTAGCTACATCGACGATGGTACCAATGAGAGCCACAGATATTTTCTCTCTCGCAGAACAGTCCTGGAGATGCTTAGGGACCGAGGCTACATTATAAACCCCTCAGATATCGACCTCACTCTCCAACAATTCCGAGAAATTCACGGCCAGTCGCCCGATGTTGACCGCCTTAAACTATCTGTCGTTCATCGCTCCGATCCCTCCAAAAGAGTAAGACTCCACCGCTTCTTGCTCTTTTTTCCTTTGATTTCTTTAAGCCGCGGTTTGTAAATTTGTTCCGCGGTGTCTTGTTTGTCATAGCTAAATTAGGGTGGGAAATATGAGTACGAAAAGAGTTGTTGTGGTTCCTCCTCAATGGGACTTTCACCTTCATTTAGTTTTTGGTTACTTCCAGAGTGTTGATTTGGTAGATTACTTTTGAATTTTGTTCGGAAGATAATGGTGCATGTTTTCCTTTTGATTATCATTGAAATGCAGTGGACCAAACTGCCTACCTTCTTAGCCATTATTTGCTGCAATTGAGCTCCTCAATTTTGAACACTTCATTTCGTACCATTCTTTAGTAGTTTACGATCTATGGTGGCTTACAGAAGTAGTTAATGTGAATTGTGATAACGGAGTTAAGTTTCCTTACGACGGATTCAACATTTATACTGAGAGAAGTATTTTTCTAAATCTGGACGAAACATAGAAATTATTGAAAACTATTTGAAAAGCTGACAATATAAATATAGATATTAATCATGATGCTTTATAGTTATGTAAGTAGTCTAACATCTTTATTTATGATTTCAACTGATCATTGATTTTGCAGATCCTTGTAATATTCTGTGGGACCGGTGCAGTAAAGCTTAATACTGTTCGCAATATTGCTGGCCAAATTGTTAATAAAGACACTTTACATAGTCTCATTCTAATTGTGCAAAATCAAATTACTAACCAAGCTATGAAATCAGTTGAGGGTTGGTCGTTCAAGGTTGAAATATTTCAGGTTCGTTTCTTGAAGCTGTTTATGCTCTCTTTAGTTGACAGTAGCATCTTGGAAAGTACTTGGTATCAAAGAGTCATTAATTTGTTGCCTTTTTGAGTTTTTAGTATTTTCTTCACAGTTCAGTCTTCAGTGTTTTCTTCGCTGTGGACCCTGTTGAGATTGTTATGTAACTCTAATAACAACATAAGCTGGTTAAATTAAATATTAACTACCAAGCAACATGGATATGGATACCAGACACAAATATGACATACACAGGCACGATAACATGTCATTTTTTAAAAAATGTAGGACACGGGCACAACATGGACACATTTAATAAAGTATACATTTTTTAAAATATATATTATTTTTATACCAGAAGGAAATTCAAAGTCAATAAGTTATGCATTTTATATCCTTAATAAAATGAGTCTGATGTATTTTACTCTCAAAATTTATGATTTTTTTTGTTCTATATTAGTATATGTCTATTTAGCATACTTAACAAAGGTTCATTATAGACATATGTTGGTCCTATCTTGACTTTGTCAACTAGTGTCAAGCATACATCTATTGTGCTAACAAGTGTCCAAATGTCCAACTTGTGTCGAAAACGGACATGCTTTTCAAACTAAAGTGTTCGTACTTCTTAGATTAATTACATCATTAATCACTTTTCATGAAGTTAGGCATGGACAGGAGGAACCGCAGAACACTAAAAAGGTGGGGGACCAAGAGTTTCTCACTGTAGGAAAGAGGAATAACTTAAAAAAATAGAGGTCTTGGGAATTGAGACAAGAGAGTGACCGACAAGGATGAAATGCTGAAATAGGGGAAGGGTTCCAAATCTTTTGTTTCCTTACCTGAACAAGGGCGGCATTTAGAAGCTTATCATATTTTAAACCTCTTCAATAAATTTAAAGTAAGGAAATATTCTAATGGTTGAGAGAAAGAATCCTCCGGTCACTATTTCATGGCGACTGAATGTATATATTGGCACTTTATTTTTCTAGTAATCATTGAACAAGGTAAAACTTAAACACTAGAGATTAAAGATAGATATACTTGCTTAGATGCGTAGGACTATGGAGTATGGAGAAGTTTGACCATTATTTTAAACATGATTGTCATGGAGAACAAATAAGGGAGAAACTAACATTAGATGTGAAATATGAAAAAAAATTGCATCCTGTTGTACGTAACCTACAATTGGTCAATGAAAACTGGATTTTGGAATTGATACCATAGTTTTTATGATAGTGGTAACAATTGTTGTAGAATGTTGCTTTAGAAGCCAAATTTAGACTTAAAGGGCTATTGATAATCTCAAAAAGTTCATATGTTGAATTTATATGTTGCTCATTTTTGTTTGTTACCAGATTACTGACTTGCTCGTTAATATCTCAAAGCATGCGTTAAAGCCAAACCATCAAGTGCTAACGGAGGAGGAAAAACTAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGGTAAGATATTGAGAAGCAATGAAGTACCTCAAACTATTTCTTAATGCTTACTTTTCTGTATACAATCTTTGACTGTTATGGCTACTTGCACTGGTGGATAACTTAATTGTGAATTATGTTTCCTTCCGCATGATTGGCTGTAGCTTAAATGCTGGATATTAATCTGTGTGCAGTTGCCATAAGCTTTGTAATTCTTTTTTTTTTTTTTTCTTTTTTCTGGATAAGATAAGCTTTGTAATTCTAACAAAGCATTTTTAAGGAACGAAACTCTTTCTCATGTTAAACATCTTTCCTTGAATGACCAACAATTTCTCCTTTCCAATATTTATGTTAAATGCTGATAAGAGCTATACATCAATGAACATCTTTCAATGTTTTCAGTATACTATAGCTGGGACTTTGAGTGAGCAAATGGCTTAGTATCTCATTTCAAATTAGCAATTTGTTTTGGCAAAACTCATTTTGTCCTCCAAATACCGATGTTTTTTTTTGGAGCGTCTTGAGGGTGGGTTTAGCATCTTAAGCTTGGGTTTAGTAAGCTTGGGGCTTAAGTAGAGGGTTTAAGAAGTTTTGGTCTAGGAAAATGGTGTATGGGGAGGTTTAGGAAGATAAGGTTTAGAAAAATCTACGAAGCACGCCTTCATTTTAGGTTGAGCGTTCGTGTCAGACATGGATACATCCAGAGTGTTCGAGGTAAGGTTCCTTGGAATTGTGCGGCTAGAGCACTCCTTTGGCATCTTTGGTTGGAAAGGAATCATCGTATGTTTGAAGGTCAATCTTCTTCTTTTGAGTCTTTTTATAGGAGTGTACAACTCACTTCTTCTCGGTGGTATTATTTACATAGGAAATTCTTTTGTAACTATAATCTTTCCATGATTATGAACAACCGGAAAGCTCTTCTTTAGTTTTTTGGTGGGGCGGGGAGCCCTCTCCCCCTCGCCCTTAGGTTATTTATTCCTTTTTTTGTTGTCTATATACTCAAGTTTCTTATAAAAAATAAATAAATAATTTTGAACACGACTTGGACACAACTGGACACAACTTAGACATGTAGGGAGTGTTTGAAGCATCGTGTTGGATTTAGATGGTTTTGGAATCCAAACCCAAAACAACTTTTGGGCCGTTGTGTTCAAAACCTAATGGATTTGAAACACGACCTCATGATTTTGAATAGTGCATCCCATACACTGTTTTCTAATTCCCAGGCTTCAGAACACTACATCTCAAATATTGTTTTCTGATTCCCAACCTTTCGAACCCTCAAAACAAATCCCCTAGGGTTTCGATTTCAAGAGTTTTGATTTCAAAAGCAGATTTCAAACGCCCCTTAGGTGCAGGTGATTTGGTTTGGCTTGCATATCTTGTGTGAAACTAGAGCCGAATCGAATATTTACCAAAGAAAATTTCAAAATCGACGCCGAACCGGCGTGTTGAAGAAACCACACCAACCGAATTGCTAATCGCCGACGCCCGTCTGGTTCGGTTAGCGGTTCACCGATCACTTGGGGCGCGCAGGTCGGATATTGGGGCAAGTCGAGTATGGGTGGTTTGCACGGCTTGTGTTTCTTTTTTATTTTTATTTATTAATTTTAAACACTAAAGTAAATAATAGATTCCCTGAATTGTGCCTCACTTTCCTTTTTGTCTGATTTTGAACACCGACAAAACGAAGATGAAGAAACATAAACGCAAGTTTCAAAGTCTCGTCCTTTAGCTTCGATAATTAACGTCAATGACCGGCTGGGGGTGGGTGGCGGTAGACTGATGGTGGGGACTGGGAATGGAAGGGATTGACTGCATGGTTGACTAAATCTGTGAATCTGAATTTGTGTGTTCATCTATTGTTGTGATATTTGTGATTAGGAATAGGAATATATTTGGAAACTGAAAAGAACGAATCAAAATCACAGAGTGCTACAGAATATGTTTCAAATTTTATTTTACCTCTTAGATTAGGAATAGGAATAGATTTGGAAACTAAAAAGTTTGGTAATTGGAATGGAATTGATTTATGGAAAGCTTTGAAATTGGAAAAAAGGATTATACTTACTAGATTTGGAAGATGGAAATTGGAATGGAATTGTAATATGGAAAGCTTTGAAAATGGATTGGCCAAAACCAAAACTGAAGAGAAAACGCGCTGAAGCCCTAACCTTTGAATGATGAAGGCCGAATGGAAAAAACCAAAAAAGAAGAAAGCATAGCGTCCTTGAATAACTGGTTGGCTCGGTGTTAAACAGTGCAACTACAAGAGGAACGGAAGCCCAACGAAACCATTTGGTTTCCTCACCATTTAAACCGAATTTGACTGCCTAGACCGAACCAAAACCGAACAGCCAGCAGTTTCGGTTGGTTTGTTCAGTTTAAGCTTGCACCCAAGGACATTACTGGAGAATTTTTGAAACAAAAAAGGCCCAAATCATTAAAATTTAAAACAATAAAAACAAAAAAAAACAAAAAAGGATCGATAATTGTGAAATCTGGTTAAGTAACATTGTTGACCAGTAACATTGTTGGCCACTCGTTGGTAGCCTCTTCCCACAATCAGTCATCTTCACCATCAGTTGTTCACCATTTAGAAGTATGTTTTTTTTTCCCTGAACTTCCTATAAGTCAAGTTAAATTAGAGTTAGTTAAACTTAATTAACTTGACATTTTATGCGTTTTAGTGAAGTATATTTAGTGTTTTATATTAAATCTTACATATATCTTAAAATAATAATGATAAGGGTTGAAAATTCACGAGCTTCTGAAAAAAGCAGCAAGCTTGTATGATGGAGATGTGGTTTCATTTGAATCTGGCAATGCAACCTACAGGTTAATTTGAGAAACATTTAGAAATATCTTCTGAAAATGGGCTTCCAACTAATTTGAAGGGAGTTGCATGAAATTAAGGTAAAGAGCTGTAGGGTAGGGAAAGATCTGTTTTGTTCATGGTTCGTTAGTGGTTGTTTTTTAGAAAAGATCAAGAGTAGATTATTTTTTTGTACATTTACTAAGAGAAGAAAAGGGACTCTTATATATGAGAAAACCCTTACTTACTGAAAAGGAATTAATCTTCTAGCACTTATAATAATACAACTCATATACAAGATACCAAATATTCTCATTCACGAATAAGGAAATAATCAACAAGATACCAAATATTCTCATTTATGAATAAGGAAATAATCAACACTCCCCCTCAAGTTGGTCTGAAGATATCTTCCATTGCCAGCTTGATGATCATCTTGTCAAATTGTAACTTAGGGAGACCCTTTGTGAACACATCAACTACTTGCTCTGTTGTAGGGAGATAGGGAATGCATATTACTCCTGCATCAATCTTCTCCTTTATGAAATGTTTATCAACTTCAATATGCTTTGTCCTATCATGAAGGACTGGATTGTGAGAAATGGAAATCGACCTTATTGTCACAGTAAATACGCATTGGCTGCTTCTGAAAAAACTTTAATTCTTCTAATAATCATTTTATCCATATGCCCTCACAAATCCCGTGGGCTAAGGCCCTGAATTCAGCTTCAGCACTACTTCTGGCCACCACATTTTGTTTTTTGCTATGTCAGGTAACTAGGTTACCTCCAACAAATGAGCAATAGAAGTAGATCGTCTATCTGTCGTATTCCCTGCCTAGTCAACATCAGTGTACACTTCAACATGCAAGTTATGATGTTTCTTAAACAATATACCTTTTCCAGGAGTTCTTTTTAAGTATCTTAGCATCCTATAGACTGCTTCAAAGTGGGATGGTCCTGGGGCATGCATAAACTGACTTACCACACTTACTGCAAACGTAATGTCATGACGTGTGTGAAATAGACAGAAGTCTATGGTATTTTTCTATCTTTTACCTCTTTTTCTGTTGCAATGTGCAATTTCAAATTTGGTTCAATAGGAGTGTCTGCTGTTCGACAATCAAGTAGGTCTATCTCTTCAAGTAAATTAATGATATACTTCCTTTGATTTACAAGAATACCCTCTTTCGATCTAGCAAACTCCATGCCTAGAATATACTTCAGGGTTCCCAAGTCTTTGATTTGGAATTCATTAGCCAGATTTTTCTTCAGGGTAGTCAAACCTGCCTTGTAATTTCCTGTGAGAATAATGTCATCAACATATACTATTAAAACAACAATTTTGTTAATTTCAGTATGTCTATAGAAGATAGTATAATCTGCTTGACTTTGACAAAATTCATAACTCATGACTACTTTTCCAAACCGTTCAAACCATGCTCTTGGAGATTGTTTAAGGCCATATAGAGATTTCTTCAACCTGCACACTTTGTTAATCCCCAATTCTTTTTCAAATCCAGGTGGTAAATCCATAAATACCTCTTCTTCAAGATCTCCATTGAGAAATGCATTCTTGACATCAAGTTGGTTAAGAGGTCAGTTTGTGTTGACGACAATCGATAACAGAACTCTAGTCGAGTTAATTTTAGCAACATGTGCAAATGTTTCCTGATAATCAATCCCATAGATTTGTGTGAAACCTTTAGCAACGAGTCTCGATTTGTATCTATCGATGATACCATCGACTTTTACATTTTATATTAAACACCCATTTACATCCTCCTGTCTTCTTGTCTTTTGGTAATTCTGCTATGTTCCATGTGTTATTTTGTTTAAGAGTACTCATCTCCTCCATAACTGCTGACTTCCAATTCAAGTCATATAACTGCTGACTTCCAATTCAAGTCATTTAGGGCCTCCTGTATATTCCTTGGAACAAATAGATTGGTTATCCTAGATGTGAAAGCTCTATGGTTATCAGACAGTTTATGGTAAGAGAGATAATTTGAAATAGGGTATTTGGTGCAATTACGAGTACTTTTCCTATGGGCTATCGAAATATCAAGATCAGGTATTTCAGGTAAATGATTTATACTAGAAGAGGAATTGGGAATAGAAGTTGTGTTACATGGATCTTCAGAATCATTCATCGGAGTATTAGATTGTTTCTGTGACAAGTCTACCATCTAGTCCCGATTCTTTTGATTCAATGCCCTTCTAATATAAACCTGAAGCTCAGGATTTCGACCAATCAAACTACTTTGTAGTGTTTCTCCCCCTGAAGAAGAGTTTTCCATACATGGCATTGAAGAACCAAAACTAGTAACCTTCGTACTAATAAACAAACTATCGTTTTCCTCTATGAGTTAAAACTTTAGACGGATCCCAAACATCACTATGACTTAAGTAAAAAGGAGCGGAAGCATTGTAAGGTTTGGGCAAATAAGTGGATCGATGATTTTTTTGCAAAAATACAACTTTCACAATGAAAAACAGAGCAATCAGTTCCTTAAAATAAATATGGAAATAAATTCTTTAAATAGAAGAAACTGGGATGTCCTAGTCTACGATGTCAGAGCATTATAGTTTCTTGAACGGGGGAAGAACTAACACTACTCAAACCTTGAGCTGTTTGATGACTAGTCGGAGATTCCTCAAAATAGTAAAGACCTTCAAGCATCCTAGTACGCCTAATCATCTCCCCCGAGTTTCGATCCTTAAAAATACAATGGGAATCAAAAAAGATAACACGACAATTTGCATCTTTGGAGATTTGACTCACAGATAATAAGTTACAAGCTAGCTTTGGAACATGCAGAACATAGTGTAGGGTAATTTTTGAGGACAATTTAATAATTCTTTTTCCTACAATAGAATTAGAACTACCGTCTGCAATTCGAATTTTTTCATTACAGTACATCGGGGAGTATGATTCAAATATTTTGGAGGAGCTGTACGGTAATTTTTGAGGACAATTGAATAGTTCTTTTTCCTACAATAGAATTAAAACTACTGTCTGCAATTCGAATTTTTTCATTACAGTACATCGGGGAGCTAAGAAGCACAGACACGGTCACGAGACACGGACACGACACGACACGGACACGGCGACACACCAATTTCCAAAAAAGTAGGACACGATAATTTTTTTTTAATATATTTTTTAATATATGAGGTATATTTTGACATGTTGTCAATATTTAGTACTCTTAGTGTAAATTTTTACCTTTAAACATCAAAAGACATGCATAAAATTCATTAAAAAGATTAGATAACAATATCGATATCATATCATAACAAATAACAAATAACAAATAACAAACAACAACATCCAATATTCAATAAGTCTTAAACAAATTCTGGTTCATCCAAAGATAAACTTGCTACTTCAAGCATTCCTACATCCTCAAATGAATCAAAAGAATCTCCAGCGATGTCCCACAATCTAGTCTCTCCTTTGGAATATTATGGAGTTCTCCTTGATAAAAGTCGGAGATTGCTATGGATGAACACTAAGTCTTCTGCACGTTGTGGCGTCATCTTGTTCCTTCTTATGGAGTTCACAAATGAATATGTACTCCAATTTCTCTCGCAACACGAGGAGGATGAAGGTTGCACAAGTAGTTTGAGAGCTAAAGCCTGTAGAGTTGGAGTAAAAGCACCATAAATGACCCACCAACTTTTAGGATCCATAGAATATCTTTCACGTATGGAATCATGGTCTGCAAACTCTGCTGCCATTGTAGAGAAATTAGCAAATTCCATGTTCACTTTTGTGCGCTCCACATTTGAACTAAAATATCTTTTGATGCATTTCATTCTCTCTCGAGATACTTCTAAATCTTTATGGGGTGGGACTCGAGTCTTGTCTTCTTGAAGCCATAGTTCACTGTAATACCTAAATAAAATTTTTAAAATATCAACTTAAGAGTGTATCACTAATTAGAAGAAAAAAAGGAAAGAAAGTAAACATCTAATAGTTGAAGAGTAGTATGTAGTACTAGTAGTGTAGAGTACCTTGGATTTAGAGAATGTGCCAAACAATGGAGTGGAGTGTTATTTTTGTTCCAACGATCAATTAGAATTTGATGCACCACGTCATAAAAAGATGAAAATTCATCTACCTGCTTTCCTTCATGTTTATAGATTGCAACCTTCACCTTTTCAATCATACTATCCCACATATCATATACCAAGTGAAGACATGGTTTGGTATCACAAGCTCTGATCATGTCATATATAGGTGAGGTAAACGAAAGAATATAATCGATCTTATCCCACTAAACATATCAAGTACCAACTGCTTTCACATGTCTTGCTTTTTCCACATCATCTTCTCTATAACAGGACCATTTATCACTTATAACCATACTTTGCAAACCACCCTTAATGAGTTTAAATCTTTTAAGCATAATGATTGTAGATGCAAATCATGTTTCTGCTATTGAAAGTAGCTTCAGAGGCACAAACTCATTGAACATTGCAAGCCTCATCGAATGATTCATGATAAAATTCTTTACCACCATAACATCACTAGAAATATCAGAAAGCCAACCACACTCTTCAAATACATGTTGATTACTTTCAATATTTTTGGCCAAACAAATATTTTTCAAAGCAAGGTTCAGAGTATGAACTACACATGGTGTCCATACTATGTTTGAAAATTGTGATTCAATAATTTGTCCTGCACCTTTACAATTAGGAGCATTGTCAGTGATTATTTGGACCACATTCTGATGTCCCACCTCATTTATCACTTCTTTCATCAAATTGGCTATGAAATATTTATCTTTAACCTCACCCGAGCAATCTACTGCTTTAAGAAACATTAGCCCTCCTTCTGTAATTGCCATAAAATTAATTAAAGGCCTCCTTTGTGAATCACTCCACCCATCACTAACTATACTTACCCCCTTCTGACACCATGTACTTTTAATAGGCTGCAACAATCTCTCAACATTTGCCTTTTCCCTTTGAAGAAGGGTTGTCCTTAACATATTATACCCCGAAGGTCTATAGCCCGACAATGCATTGTTTGCAGCTAAAGTAAATGCATTCACATAATGTGGATTTCTAGCCAAATGAAAAGGCAATCCGGCAGAATAAAACATTCTAGCAATTTCTCCATGCAATTGAACACGGGTTGCCAAGTTAAATGACTTCTCGAGTGCACTAATATTTCCTTTCCTTTTCTTTTGTTCCATGGTTGGGAGGGAGTTACTCATACATCCAAAAGATTGAGATTGGGTATAGATTGAAGGAGGTAAAGGAACTTGTTTGGGAGTGCTCTTTTGATTTAGAAGTTTTGCTCCATCATCCAATCTGTGCATTTCAGCAAGATCTTTAGGGGTGACCTTTCGACATATTCCAATTCCATAACCGCTTAACTTCAACAAGTGGGCCCTAACTCTCGTTTAAGAACTTTTCTTCCTTTCTTGACAAAAATTATATTGCCAAGAAATATTCCCGCCTCCTTCATTCAATCTTTCATTTTTGGTCACATAGTTCCACAATGGTTTTGTTTCATCTTCAAAAGAGGAGGTGGAACACTCTTTTGAATTTGTTTCTGAATGACTAGAAGAAGACTCCATCCTAAGTTAAATTAAAAAACAATCTTCAACTATTATTCAACATAAGTAGTAAACAAATAGAAAAAAAACACAATTACCTACTGAAATATGTTTAAATAGAGGAGAAGGCTGAAAAATAAGTAGAAAAAAATGATTGCAGCTGAAAATTGAAGACCTGATGTTCTTTTCTTCAAAAATTGGTCACCGGTGAGTTTTCGGTGAGTCGCCGCCCGCCGATGGGTGTTAGGTCTGAGCGCCGGCCAGTGGTCGAACTCGAAGGTTTAGTGGGTTTTATTTTTAAAATCGTGGTTGGCTGGTTGCAGAAGAAAAGAAGAAGGTTTGGGGCTGCTACTGCTTGAAGAAGAAGGAAAAACCCTAATAAAAGTGGGTTGTCGATAGGTTTAAGTGAGTTTTTTTAGTGGGCCTTTTTAACGTGTCGGGGCGTGTCAGAATTTTATAAAAAAAAAAAGACACGCTAATTAACGTGTAGGACACGTGTCCGACATCGACACTTTGCCATTTTAGAAGTGTCGGTGCTTTCTAGTCGGGGAGTATGATTCAAATATTTTGGAGGAGCTGGTTATATGATCAGATGCCCTAGAATCTATGATCCATGGGAATGAGTTAAGGCAAGAAAGGGCTCGAGGATAATTTCCTGTTTGTACCAAGGAAACACTAGGATTACCAGATGATGAAGTGACCTTCAACAGTTTCGGGAATTGATCAACTTGCTCCTTGCTGAATGGATTAGAGTCAACAACATTAGCAGAAGATGGGTGTTGATTCATATTCTTCTCACCTTGCCTATTACCTTTCCAATTAGCTCGCTTCCCATGAAGTTTCCAGCAAGTCTCACGAGTATGTCGAGGTTTGTTGCAGTAGTCACACCAGACTTGAGGTTTATCATTTGTCTTGGCTGTTTGGTCTGATGCCTTGTGTGTCGAAGCCTCGACTATTAAAGCGGAACTTTCAGCAGAATCATACACTTTCTTCCCAATCATTACATTTCGATGACTCTCTCCCCTGCGAACTTAAGAGAAAACATTATTAATAGTAGGAAGGGTAGGTTTACCAAGTATTCTCCCTCTAACTTCATCAAATTCAACATTGAGGCAAACGAGGAATTTATAGATTCGACTGCCTGCCACAACTTCTTTGTAGTTCTTTTGGTCATCCGTTGACTTCCCATTCATAGGAGTTGAATAGATCAAGATTTTGCCAAATTCGTTTCAACAAATGAAAGTATTCTGTAACCGAATTATTTCTCTGTCTTATGTCACCCAGTTTGAGATTGAGCTCAAACACCTGTGACTGATTTCCTAAGTCGGAATACATCTGAGTCACGCTATCCCATAATTCCTTAGCAGTAGAATAACACATATAATTGCAACTTATATCTTCTACCATGAAATTTACTAACTATGTCATCACCATAGAGTTCTCAACATCCCACCCAACAAATGAAGGATCATCTTTGGTAGGCATGAGTTTTTCCCCAGTAAGGTAGCCAATCTTCTCTTGTCCTCGGATATACATTCGAACACTTTGCGACCATCGAATGAAATTATCACCATTAAGTCGAATTGTAGTAATTTGGACAATAGGGTTGTTAGAATGGGTCCGACTATCTGAGCTTTTACTAACCGACAAAGACTTACTTTCCGACATGCTTCCTGAAGATCAACACACGTTGAACAAGGACAAAAAAATAGAGATAAAACAACACCCAAGAAAAGTAAGAAGCAGTAACCACAAGAAAGCAATGTGGGCCCTAATACAGTGCAATATTTAGTATGCAAAGATTTAGTTGATGGCGATGACGAGGGAGTAGCCGGCGAGGAAGTAACCAGCAAATGACGAACCTACGAACAAGCAAATACCACGTTGGGTCGCGGGTTGCAAGATCGCAGGGTGTGCATCGCAGGTTCTGGGTCGCAGATGTTCGTGGTTTGCAGGTTTAATTGTTTGTCGATGTCTCCGGCGGGTTCTGTTGTCTCCGACACGAGCTTCAACACTAGACGACCGACGATGTGGGTTATCGATGGTGACACTTGGGGAAGCGACGACTAGGGTTTTAAACAGAATTAGAGTTTCTGCTTTGATACCATGTAGAAAATATCAAGAGTAGACTATATTTTCTATATATTTACTAAGAGAAGAAAGGGTCACTTATATAGGAGAAAACCCTTATTTACAGAAAAGGAAAATCTTCTAGCACTTGTAATAGAACTCATATACAAGATACCAAATATTCTCATTCACGAATAAGGAAATAATCAACAAGATACCAAATATTCTCATTTACGAATAAGGAAATAATCAACAGTTTTTACATCGAGTGTACTAATCTTAAGGTTGTTCTAAAGTTCATTCTGGAGCAATTTTGATGGTTGGAGGAGTCCCTTGTCAAGCGGGTGCAAGAGCCTTTCAGTAGGCCTTTCGCGGCGTATAGGGGGGATGGGGGTGGAGAAGTTTGGTTGAAGAAGCTTTTTAGGAGCTATTGTGTAGTGGGTTGTTTTGGTGGGTCTCCAGAAGCTGTGAGGAAGTTTGTTCGTATACTGATGGGGCTTCAGAGAATGATTGGCTGTTTTTTTGGGAATTCTTGAAAAACAGTTTCAACGGAGCCGCTTATGTCGCTTTTAGCAGAAGTTTGGACGGGCCACGTCAGTTGAGGTCGGTGAATGGGAGTGGCGGGGTTCAAGTTTCCTTTTTGCCAGCTCGTGAGGTGTCAAAGATTTTGGAGAAGGCGGAGTCAGATGTGTCATTGAGGAAGGAACTCTCTTCGTTCTGGGTAAGAAAGAGAAGTCGTACTAGATGTAGATTTTGAAAATTTAAAGGTGGTACTCTTGAGTTGAGATAAAGAAGGTTTTGAGTGGGTATTTCTATTGAAAGGTGGTCATTAATCCGTTTATGGAAGACAAAGCTATGCTGAAATTGGAAGATAGTTGGAAGGGAGTTAAAATGATTGGTAGATGGAATTTTATTAGCAATCTTCATCTTTTAATTGAGGATTGGTCTCCGCCGAGACATTCCTCGTCATCTCTGGTTCAAAGTTTTGGAGGTAAGGTTGAGCTTTACGATCTTCCGTCTTGCCATCTCTGGTTCAGAGTTTTGGAGGTAAGGTTGAGCTTTACAATCTTCCTTTAAGTTTTTGGAACCGTGAGAATTTTGAGGAAATTGGAAACAGGGGGTGGTTAGTATCCTTCAAAAAAAAATTTGAATTTGATTGATTGTTCTAGTTGTTGTCACTGATGTGGAACCAAATTTGTGTGGTTTTTTGCCTCCCAACATTGAAATCCCGATTCTTTGTTAGGATCGTATTATATTAGGGTGGCTCCATTGTCAAAATCGATTCCTTTTGAGGTTCAGGGTTGTAATTTTAGCTTGAGTGATTTTACAAATTCATTTGATCGTCTTCGAACTGCAGAAGTTGGAGGGTGAGGGTTTCGTGGAGGAGGACAAGGTTGAAGATGAAGCTGATGTGGACTTAGTTAGGGGTCAAATCGAGTGGCGACCTTTCGGTGTCTAATGAATTGATTGTTGGGTTGGGCATTGAACCGGTGGTTGTTTTTTCGGCAGCTGATGGATTAAATGAGGGGTTGTTTTTTCGGCAGCTGATGGATTAAATGAGGTGTTGGTTAACAAAGGTGGTAATGTAAACGGTTCGTTGGAAGTGGTAGTAGTTAAGGAGTCAGTTGGGGTGGAAGGAGTTTTAAGTAATTACGAGGTGGGTCCCACCCCAAATTTACTGTTTCTGAAAATTGGGTCGCTAAAACAGGGTGCAGAAGTTGGTTTGGGAAATGGTTTAATTGGGTCGTGGTTGGGGAGTGTCTCCTCCTTCTCCCCCTCCTCTGTTTTCCTCGGAATCCCCTGCATCGGTGCTTGCAGTTAAAAACAAATTTGTTGAGGCATACGAGTGCTATTATTCAAGAAGGAAGGAGGGTACTCAAGGGAGATTCGGCCTGGAGGAAGGCTTGGTTAACAAGGATGACGTCGAAGGGGTGACTTTAAGCATCACAACTCCTTTTGTTTTAGTTGCGGACGAGGGTTCTCCTGTAAAATACCATCCATAGTTGGATTGGGCTAAAAGGTGTGAGGAGGGTACCATTTTGAAAAAGGAGGGCAAACGACAATATGTGCCCAGAAAAGTGAAGGCTGTAGGTCTGAAGGTGAGGCAGGTCAGTAAATTCAGACGGTTTGGTGGAAGATACGTTGTATGATTCAGATGTGGATTTTGAAAAAGGAGGGCAAGCGACAAGTGTACCTAAAAGTGAAGGCTGTAGGTCTGAAGGTGAGGCAGGTTCAGTAAATTCAGACGGTTTGGTGGTGGAAGATACGTTGTATGATTCGGATGTGGCTCTCAGTGTCAGTAGGGTGGAGGAGGAGGTAGGTCTTCTAGTGGAGTTAACTGAACTAGTGGGGGTGGAGGAGAGTTTTCCTTTGGCTGCTTTGTTCACGGAGTAGGAGGTCAGAGGGGATTTGGAAGGGAGTGTCAGTAGAGTGGAGGAGGAGGTAGGTCTTCTAGTGGAGTTAACTGAGCAGGAAGTCGGGGTGGAGGAGAGTTTTCCTTTGGCTTCTGGAGGAGAGTTTTCCTTTGGCTGCTTTGTTCACGGAGTAGGGGTTTGGAAGGGATTGCGGTGTCGAGGGAGGAGGCTGGTGTCTCGAGGTCGATTGAAGTACCAGGAGAGTTTAATACTTTAATGGATAGTTGTGGCTTTCTTATTAAGCAGCTCCCTCCTTTGAGTGAAGGTGGGGAAGGTGGGAGAGCAATGAAAATTGTGTCTTGGAATGTCAAGGGTTTAGGGGGTGACTCAAAAAAAAGCTGTATTAAAAAATTTGTTGAAGGAGCAATCCCCGGATGTTGTCATTATTCAGGAAACAAAGTTGTGTAAGGTTAACCTCAGTTTGATTAAATCTATCTGGAGTCCGAGGAAGTATATGCTGGGACTTTGTGGAAGCGTATGGTAGGTCTGGAGGTTTGTTGGTGTTATGGGACTCCTCAAGTTTGAAGGTGTTGGAATCATTGAAGGGGGTTTACTCCATCTCTGTTAAATTTTCTTTTCTTAATAAAACGGTTTGTTGGGTTACTAATGTTTATGGGCCGAATGGGTCGGAAGTTTTTGCTGGGAAGAGTTGTATTCCTTATTTGCTTATGTGGAAGAAGGGCTTTGGTGGATTGGGGGAGATTTCAATGTCATTAGATACAATCATGAAATAATACCCTGCCGGCCTGCCAACTGAGGGATGAGATCCTTCAACAAGTTGATTTCAGAATTGGACCTCATAGGTCTTCCTCTCACAAATAGCAAGTTCACTTGGTCAATACCGGGTGATGTTACGACTCAATCTCTTCTTGATAGATTCTTGATTTCTAAGGATTGGGAGAATTGTTTTCCTAACCCGATGGTGACAAGGTTGGCGAGGTTACGCTCGGATCATTGGCCCTTATGTTGCAAATTTGGTGGGTTTATTTGGGGACCGCCTCCTTTTCGGTTCTTCAATTCATGGCTGTTGGAGAAGGAGTGTGTAGTTTTAATGCAAATTGTTTGTCGAACAAGTCGTATGGGTGGGCTGGGTTTGTGATTTCCTCTAAATTAAAAAGACTTAAGGCAGTGTTGAGCAAATGGGTTGTGGAGAGGGGGAGGGCTAAGAAGAGGCAGTTAGTCTCATTATTGGCAGTAATTAAGGGGCTGGATGAGAAAGTTCTCAGGTGTTCTTTCACTTAGGAGGCGGAAAATCGATTGAAGGCTCAAGGAGGAGTTGTGAATTTTTACACCGCGGAAGAAAGAAACTTGTTGCAGCAAAGCAGGATAGCATGGTTGGCATTGGGGGATGAAAACACTGGCTTTTTCCACAGGTTTTTGGCCGCAAGGAAGAAGAGGTTGATGATTGCGGAGCTTGAAGGGAAGGATGGTACGATCTTGTCTGATGACAAAGGGGTGGAAAGGGAGATGGTTAGTTTTTATGCAACTTTATATATGCGCCATCTACTAGGGGTTTTGATAAAGGAACTATCTCAATTATGCTTGAAAACTCCCCTTATTCAAGGTGAACCCCCACAACAATGATAAGATTAACCCCAATAACGATATGATAAAGCAACCCCAAGAAAGTTAAAGAGATATTTACTTGGAAAAGTTGATCGATGATCAAGAAGAAAGGAGAACTTGTTCCTAACTTCAAGATTTCTAACTCTCCACGATCTAATTGATCAAACTAGATTGAAAGTCCTAAAACATGCATTCTAAACACAAGAATACAAAGAAAGCATAAAGCTTGAGAGACTAAACTCTATATTAAATTCTATTCAAATTCAACTTTGTTTCCAAATGACCAAATGACCAAATGACAACTCTATTTATACTAAATAAATGGACACCATGAAAGGACACAACCTTTCACGATTTAGTCCAAATCCAACCCCCTCAATCCTTGAACTCCTTACATGTACCTTGTTAATTGAAAATACATGAATTAAAGTAAGTACTTGATATTTTAAATGTGTTAATGAATCTAGATTCTTAGATTCATTATGACTTTTGGATGAAAAGGTGTCTCATCAAGAATGAACGGTTGCAATTCTTTACAAATTGTAGACATTTTAGCTTGGAGGTTGTATGCATTGTGACTTGAAGTCTTTTAGCTCTTTCTCTTGTCATTGGACCTTGTGGCATACTGATTGCCTCATGATGATGTTGACTTGGAACATGAGCTTCAATTGAGCTAGATAGATCTGATTGAGTTGATCGAGCTTGGTTCTCTTCTTGTAAGCTTTCCTTGGGATCCTCTTGATTGCCCATTTTCATATCAGGTTTTCTTATCAAGAAGTGTGTTCAAGTGAGCAGACTTCTCGTGTGCTGATTAGTATGTGTGTGTTCTTTATAGGTGTGCCAGGGGTTTGTTTTGTGTATGGCTTGCTGGTTGTGGTGGGAAGTAGTGGGGAGGTTTAGGTGAGGGGATTGGGTGGTTTTGTTTGAACAAAATGTATCTTAGGGGGGAGGTGTTCGGGGTGTGTTTATCGTTATTTTTTGTTGCTTTTGTTCTTTCTTTCACTCCCTCGGGAGTTTGTCAATTAAGAGCATTAGATTCTTTTCATTTCCTTAATGTATCTTGTTCTAAAAAAAAATAATGATAAACAAAGAATCTATCCCAATGTATTTGTGTCCCCGGGGACTGGAATAATGGGCTACTATTCAAACCCGCTGGCTTTTTCCATGAAACTTGAGTTTGGCAACTCCCCAAAAATGTGGTTTGGGCTTAGGAAGTCAAACCTAAGCTCAACCTAGGGTTTGGCATCTTAAACTTGCTGGTTTAAGGGGAGGGTATAGGAAAACTTGAATTTAAGGCCTCGTTGGATAATCATTTGGTTTTTGGTTTTTTGTTTTAAAAATTAAGTCTAAAAATACTACTTCTATTAATGGGTTTCTATGTTTTCTTATCTACTTTGTACTTATGTTTTAAAAAACCAAGCTAAATTTTGAAAACTAAAAAAAAATAGTTTTCAAAAACTTGTTTATGTTTTTGAAATTTGGCTAGAAACTTGAAAGGTTCCTCAAAAAAGATGGAAATCATGGTAGAGGAGAAATTGTGAAGAAACAAGCATAATTTTCAAAAACCAAAACCAAAAACCAAAATGTTATCAAACAGGGCCTAAGAGAACTGTGTTTGCAGTGAGTGTAGGTTTAGGAAGCTTGGGTTAGGAATTTGTTGGAAGCTTGTTTGGCTTCTAGCCCAACCTATGCTCCAAATGCCCCTTTGCTATGACCTCAAACACTTTATTTTGGCTAGCGCGTTCAACATGTGTTAGACACTTGAATACTATGAGACACTTATTGGACGTGCGAATTAGACACTTCTTAGCAGTTAGCACAATAGATATGTGTTGGATCCTAATTTTTCAAAGTCAGTATGGGTCTCAACATTTTTAGACATATATTAACACTTGTTAAATATACTAAATAAACACATGATAATATAGGACAAAAAACAAAAATTTGAGTAAAATATGTCAAACTCATTTTTTAAGTATATACATGCATAAATTATTGACTTTGAATTTCCTTTTGGTACAAAAATGATATATATTTTAATAAACATGTCCTTGTTGTGTCCATGCCCTAGATTTAAAAAAATGATGTGTCATTGCATTTGTGTCATATTGTATCCAGGTCTCATATTGTATCCAGGTCTCGTATTTGTTTTGCTACTTAGAATTGAATGGTTGGGAAGTTTTAGTAATATGGATTTGAAGGGTTCAAGTGACTCAGCAGTTAAAAACTATAAATTAGTAATTTTGTGCTTGTTAGAAGGAAGTTTGAAGAGCTCTTTTCCTCGGCTTTAAACTTGAGTAAGTGGATAACGTTGGAGCACAAAAACATTTGCATCTCTCTTTTTCATTACATTAGCTTAGCCTCTTGGATCAATTTGTCCATATGAGATTGAAGGGAGGTAAATATTTTGTAAGTTGGTAAAGGTTCTAATCTTCTTGTTTGGAAAATAGGAATTCTGAAAACCAAAATATCTGGTATACAATGAATTAAAGTAATACAACAATTCCTGCTATGTGCAATTGCTTTTTAAATTATCATGGACGATATATTTCTTAAACTACCAACTGTTGCTTCAAGTTTTTATGCCTACTTTTGATATAATGCAGCTTCCTCGTATGCTACGTACGGATGCTATTGCTCGATATTATGGACTTGAGAAGGGGCAAGTTGTGAAAGTGTCTTATGATGGCGATATGACTAGGTCGCATGTAACTTACCGCTGTGTCTGGTGATGACCTATAAATGAAGGTTGGTTTTGCCAATCATCTTTTGGATCTTTTTTCCCTAGAACTTGACTAGTTTTGTCTTAAAACATCTTCGTTACAGAACTTCTTGTATTTACTAGATTTCATGACTGCAAGAAATTTATATCCACAATTAGTGCAGACATGAGTGAAAGGTACCTGTAACTCCCTCCCCCGGATATTTTGAAATATGCTAGCTGTGTATGAAAGAAAAGGTGGGTAGCTAGTTGTATTGTAGGAGATGTATTTATATATATATATATATATATATATATATCTTTAAACATCTTTTCATTCCTTCATGTGAGAGAGACAGGCATTCTCATCAGAACAATTCCTAATCTTCACTCTCAACTTGTGTAGGTCCAGATTTGGGGTTAGAATATGGCCGTCTCTGTTTGAGATTGTGTGAGCTTTTACCATTATTTGTGTTGGATGGCAAGAGAAAATGCTTGGAAAAGAGGATAAACACCCAAAATTTGAAGTAGGAATAGTAGTATTTTTATAAATTTACTTCTATAAAACCTTAAATCAAAATCAAAATAGTTGATCATATTTTCTTCAAAATAGTTAGCAAATTGTCATCACAGGTTCTATTATTAATATCATTTTAACATATATGAGATGCACAAGGGTAATC

mRNA sequence

CGCGAAGTTCTATTCTCGGAGAGAGAGCGAGAATGGAGGAAGATGGGTTTGACGGAGAACCGAATCGAGTGGAGCTAGGCACTTGCTTGAGTAGCTACATCGACGATGGTACCAATGAGAGCCACAGATATTTTCTCTCTCGCAGAACAGTCCTGGAGATGCTTAGGGACCGAGGCTACATTATAAACCCCTCAGATATCGACCTCACTCTCCAACAATTCCGAGAAATTCACGGCCAGTCGCCCGATGTTGACCGCCTTAAACTATCTGTCGTTCATCGCTCCGATCCCTCCAAAAGAATCCTTGTAATATTCTGTGGGACCGGTGCAGTAAAGCTTAATACTGTTCGCAATATTGCTGGCCAAATTGTTAATAAAGACACTTTACATAGTCTCATTCTAATTGTGCAAAATCAAATTACTAACCAAGCTATGAAATCAGTTGAGGGTTGGTCGTTCAAGGTTGAAATATTTCAGATTACTGACTTGCTCGTTAATATCTCAAAGCATGCGTTAAAGCCAAACCATCAAGTGCTAACGGAGGAGGAAAAACTAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGCTTCCTCGTATGCTACGTACGGATGCTATTGCTCGATATTATGGACTTGAGAAGGGGCAAGTTGTGAAAGTGTCTTATGATGGCGATATGACTAGGTCGCATGTAACTTACCGCTGTGTCTGGTGATGACCTATAAATGAAGGTTGGTTTTGCCAATCATCTTTTGGATCTTTTTTCCCTAGAACTTGACTAGTTTTGTCTTAAAACATCTTCGTTACAGAACTTCTTGTATTTACTAGATTTCATGACTGCAAGAAATTTATATCCACAATTAGTGCAGACATGAGTGAAAGGTACCTGTAACTCCCTCCCCCGGATATTTTGAAATATGCTAGCTGTGTATGAAAGAAAAGGTGGGTAGCTAGTTGTATTGTAGGAGATGTATTTATATATATATATATATATATATATATATCTTTAAACATCTTTTCATTCCTTCATGTGAGAGAGACAGGCATTCTCATCAGAACAATTCCTAATCTTCACTCTCAACTTGTGTAGGTCCAGATTTGGGGTTAGAATATGGCCGTCTCTGTTTGAGATTGTGTGAGCTTTTACCATTATTTGTGTTGGATGGCAAGAGAAAATGCTTGGAAAAGAGGATAAACACCCAAAATTTGAAGTAGGAATAGTAGTATTTTTATAAATTTACTTCTATAAAACCTTAAATCAAAATCAAAATAGTTGATCATATTTTCTTCAAAATAGTTAGCAAATTGTCATCACAGGTTCTATTATTAATATCATTTTAACATATATGAGATGCACAAGGGTAATC

Coding sequence (CDS)

ATGGAGGAAGATGGGTTTGACGGAGAACCGAATCGAGTGGAGCTAGGCACTTGCTTGAGTAGCTACATCGACGATGGTACCAATGAGAGCCACAGATATTTTCTCTCTCGCAGAACAGTCCTGGAGATGCTTAGGGACCGAGGCTACATTATAAACCCCTCAGATATCGACCTCACTCTCCAACAATTCCGAGAAATTCACGGCCAGTCGCCCGATGTTGACCGCCTTAAACTATCTGTCGTTCATCGCTCCGATCCCTCCAAAAGAATCCTTGTAATATTCTGTGGGACCGGTGCAGTAAAGCTTAATACTGTTCGCAATATTGCTGGCCAAATTGTTAATAAAGACACTTTACATAGTCTCATTCTAATTGTGCAAAATCAAATTACTAACCAAGCTATGAAATCAGTTGAGGGTTGGTCGTTCAAGGTTGAAATATTTCAGATTACTGACTTGCTCGTTAATATCTCAAAGCATGCGTTAAAGCCAAACCATCAAGTGCTAACGGAGGAGGAAAAACTAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGCTTCCTCGTATGCTACGTACGGATGCTATTGCTCGATATTATGGACTTGAGAAGGGGCAAGTTGTGAAAGTGTCTTATGATGGCGATATGACTAGGTCGCATGTAACTTACCGCTGTGTCTGGTGA

Protein sequence

MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCVW

Homology

[Close]

BLAST of Tan0013544 vs. ExPASy Swiss-Prot
Match: Q9M1J2 (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE5A PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 8.9e-74
Identity = 126/210 (60.00%), Postives = 173/210 (82.38%), Query Frame = 0


Query: 18  CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLK 77
           CLS Y+D  + ESHRY+L+RR  L+MLRDRGY ++  DI+L+L  FR ++G+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 78  LSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSV 137
           +S +HRSD +K++ ++F GT  VK+N +R++   I++++T+  LIL++QN +TNQA+K++
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 138 EGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIA 197
           E +SFKVEIFQITDLLVNI+KH+LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 198 RYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           RYYGLEKGQVVKV+Y G++T SHV +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[Close]

BLAST of Tan0013544 vs. ExPASy Swiss-Prot
Match: Q9ZVB9 (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702 GN=NRPD5B PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-66
Identity = 119/204 (58.33%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 23  IDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVH 82
           I   + E H+Y+L+RRT +EMLRDRGY ++  DI+L+LQQFR ++G+ PDVD L++S  H
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 83  RSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSF 142
           R D SK+I V+FCGTG VK+N +R IA  +++++ +  LIL++Q+ ITNQA+K+VE +SF
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 143 KVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGL 202
           KVE+F+ITDLLVN+SKH L+P HQVL ++EK  LLK++SIEEKQLPR+   D I RYYGL
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 203 EKGQVVKVSYDGDMTRSHVTYRCV 227
           E GQV+KV+Y  +++ SHVTYRCV
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Tan0013544 vs. ExPASy Swiss-Prot
Match: Q9M1H8 (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE5C PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.6e-49
Identity = 94/209 (44.98%), Postives = 146/209 (69.86%), Query Frame = 0


Query: 18  CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLK 77
           C+S   D G  ES R++L+R T  EMLRDRGY +N +++ LTL +FR + G+ P+++RL+
Sbjct: 24  CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLR 83

Query: 78  LSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSV 137
           + V  RSDP K+ILV+F GT  + + +VR +  QI N   LH++IL++Q+++ + A K++
Sbjct: 84  ICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL 143

Query: 138 EGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIA 197
             + F VE F I DLLVNI+KH  +P  ++L +EEK +LL+++++E+KQLP +   D+  
Sbjct: 144 TTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFV 203

Query: 198 RYYGLEKGQVVKVSYDGDMTRSHVTYRCV 227
           RYYGL+K QVVK++Y  +     VTYRC+
Sbjct: 204 RYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of Tan0013544 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-31
Identity = 77/200 (38.50%), Postives = 121/200 (60.50%), Query Frame = 0


Query: 29  ESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSK 88
           E  R +  ++T+++MLRDRGY I  S++ +T QQF   HG +   + L      R+D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 89  RILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWS--FKVEI 148
           ++ + F     V + T++    ++ +++   + IL+VQ  +T  A   +   S  F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRA-ILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 149 FQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ 208
           FQ  ++LVNI +H L P HQVLT EEK  LL++Y+++E QLPR+  TD IARY+GL++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 209 VVKVSYDGDMTRSHVTYRCV 227
           VVK+    +    +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of Tan0013544 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.5e-30
Identity = 71/209 (33.97%), Postives = 122/209 (58.37%), Query Frame = 0


Query: 25  DGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDR-----LKLS 84
           D   E++R +  R+TVL+M+ DRGY++   ++D  L+ F+E  G  P   +     L + 
Sbjct: 3   DDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTIL 62

Query: 85  VVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEG 144
           V H  DP+ ++ V F     + + T++ I  Q + +  +   I++VQ  +T  A +S+  
Sbjct: 63  VAHNDDPADQMFVFFPEDTKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIGD 122

Query: 145 WS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIA 204
            +  + +E F   +L+VNI++H L P H V+T EEK +LL +Y +++ QLPR+ + D +A
Sbjct: 123 MAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVA 182

Query: 205 RYYGLEKGQVVKVSYDGDMTRSHVTYRCV 227
           RY+GL +GQVVK+    +    ++TYR V
Sbjct: 183 RYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[Close]

BLAST of Tan0013544 vs. NCBI nr
Match: XP_023539155.1 (DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.6 bits (1054), Expect = 8.8e-111
Identity = 203/227 (89.43%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTL
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQ PDVDRLKLS  H +DPSKRILVIFCGTGAVK++ +RNIAGQIVNK+TLH 
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHGADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQ+VKV+YDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of Tan0013544 vs. NCBI nr
Match: XP_022971518.1 (DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita maxima])

HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110
Identity = 203/227 (89.43%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTL
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQ PDVDRLKLS  HR+DPSKRILVIFCGTGAVK++ +RNIAGQIVNK+TLH 
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYY LEKGQ+VKV+YDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of Tan0013544 vs. NCBI nr
Match: XP_022950955.1 (DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata])

HSP 1 Score: 409.5 bits (1051), Expect = 1.9e-110
Identity = 203/227 (89.43%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTL
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQ  DVDRLKLS  HR+DPSKRILVIFCGTGAVK++ +RNIAGQIVNK+TLH 
Sbjct: 61  QQFREIYGQFLDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQ+VKV+YDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of Tan0013544 vs. NCBI nr
Match: XP_038903402.1 (DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] >XP_038903403.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 199/227 (87.67%), Postives = 215/227 (94.71%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF+GEPN VE GTCLSSYID+GT ESHRYFLSRRTVLEMLRDRGY +N SDIDL+L
Sbjct: 1   MEEDGFEGEPNEVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSSDIDLSL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQSPDVDRLKLS VHRSDPSKR+LVIFCGTGAVK+N +RNIAGQI NKD+LH 
Sbjct: 61  QQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVL+EEEK KLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLSEEEKQKLLQQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLR DA+ARYYGLEKGQVVKV+YDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRMDAVARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of Tan0013544 vs. NCBI nr
Match: XP_022158561.1 (DNA-directed RNA polymerase V subunit 5A [Momordica charantia])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 202/227 (88.99%), Postives = 214/227 (94.27%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF+GEPNRVELGTCLSSYID+G+ ESHRYFL RRTVLEMLRDRGY    SD DLTL
Sbjct: 1   MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLCRRTVLEMLRDRGYTPTTSDADLTL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQSPDVDRLKLS VHRSDPSKRILVIFCGTG+VK+N +RNIAGQIVNKDTLH 
Sbjct: 61  QQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+V+ +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKV+YDGDMT SHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTYRCVW 227

[Close]

BLAST of Tan0013544 vs. ExPASy TrEMBL
Match: A0A6J1I733 (DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470215 PE=3 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.5e-111
Identity = 203/227 (89.43%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTL
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQ PDVDRLKLS  HR+DPSKRILVIFCGTGAVK++ +RNIAGQIVNK+TLH 
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYY LEKGQ+VKV+YDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of Tan0013544 vs. ExPASy TrEMBL
Match: A0A6J1GH86 (DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453892 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 9.4e-111
Identity = 203/227 (89.43%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTL
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQ  DVDRLKLS  HR+DPSKRILVIFCGTGAVK++ +RNIAGQIVNK+TLH 
Sbjct: 61  QQFREIYGQFLDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQ+VKV+YDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of Tan0013544 vs. ExPASy TrEMBL
Match: A0A6J1E191 (DNA-directed RNA polymerase V subunit 5A OS=Momordica charantia OX=3673 GN=LOC111025016 PE=3 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.1e-110
Identity = 202/227 (88.99%), Postives = 214/227 (94.27%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF+GEPNRVELGTCLSSYID+G+ ESHRYFL RRTVLEMLRDRGY    SD DLTL
Sbjct: 1   MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLCRRTVLEMLRDRGYTPTTSDADLTL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQSPDVDRLKLS VHRSDPSKRILVIFCGTG+VK+N +RNIAGQIVNKDTLH 
Sbjct: 61  QQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+V+ +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKV+YDGDMT SHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTYRCVW 227

[Close]

BLAST of Tan0013544 vs. ExPASy TrEMBL
Match: A0A6J1I260 (DNA-directed RNA polymerase V subunit 5A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470215 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.7e-107
Identity = 198/224 (88.39%), Postives = 213/224 (95.09%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTL
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQ PDVDRLKLS  HR+DPSKRILVIFCGTGAVK++ +RNIAGQIVNK+TLH 
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYR 225
           SIEEKQLPRMLRTDAIARYY LEKGQ+VKV+YDGDMTRSHVT++
Sbjct: 181 SIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTHQ 224

[Close]

BLAST of Tan0013544 vs. ExPASy TrEMBL
Match: A0A6J1GHB9 (DNA-directed RNA polymerase V subunit 5A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453892 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.3e-107
Identity = 198/224 (88.39%), Postives = 213/224 (95.09%), Query Frame = 0


Query: 1   MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTL 60
           MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTL
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHS 120
           QQFREI+GQ  DVDRLKLS  HR+DPSKRILVIFCGTGAVK++ +RNIAGQIVNK+TLH 
Sbjct: 61  QQFREIYGQFLDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQY 180
           LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYR 225
           SIEEKQLPRMLRTDAIARYYGLEKGQ+VKV+YDGDMTRSHVT++
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTHQ 224

[Close]

BLAST of Tan0013544 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 278.1 bits (710), Expect = 6.3e-75
Identity = 126/210 (60.00%), Postives = 173/210 (82.38%), Query Frame = 0


Query: 18  CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLK 77
           CLS Y+D  + ESHRY+L+RR  L+MLRDRGY ++  DI+L+L  FR ++G+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 78  LSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSV 137
           +S +HRSD +K++ ++F GT  VK+N +R++   I++++T+  LIL++QN +TNQA+K++
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 138 EGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIA 197
           E +SFKVEIFQITDLLVNI+KH+LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 198 RYYGLEKGQVVKVSYDGDMTRSHVTYRCVW 228
           RYYGLEKGQVVKV+Y G++T SHV +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[Close]

BLAST of Tan0013544 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 253.8 bits (647), Expect = 1.3e-67
Identity = 119/204 (58.33%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 23  IDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVH 82
           I   + E H+Y+L+RRT +EMLRDRGY ++  DI+L+LQQFR ++G+ PDVD L++S  H
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 83  RSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSF 142
           R D SK+I V+FCGTG VK+N +R IA  +++++ +  LIL++Q+ ITNQA+K+VE +SF
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 143 KVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGL 202
           KVE+F+ITDLLVN+SKH L+P HQVL ++EK  LLK++SIEEKQLPR+   D I RYYGL
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 203 EKGQVVKVSYDGDMTRSHVTYRCV 227
           E GQV+KV+Y  +++ SHVTYRCV
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Tan0013544 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 196.8 bits (499), Expect = 1.9e-50
Identity = 94/209 (44.98%), Postives = 146/209 (69.86%), Query Frame = 0


Query: 18  CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLK 77
           C+S   D G  ES R++L+R T  EMLRDRGY +N +++ LTL +FR + G+ P+++RL+
Sbjct: 24  CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLR 83

Query: 78  LSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSV 137
           + V  RSDP K+ILV+F GT  + + +VR +  QI N   LH++IL++Q+++ + A K++
Sbjct: 84  ICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL 143

Query: 138 EGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIA 197
             + F VE F I DLLVNI+KH  +P  ++L +EEK +LL+++++E+KQLP +   D+  
Sbjct: 144 TTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFV 203

Query: 198 RYYGLEKGQVVKVSYDGDMTRSHVTYRCV 227
           RYYGL+K QVVK++Y  +     VTYRC+
Sbjct: 204 RYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of Tan0013544 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-32
Identity = 77/200 (38.50%), Postives = 121/200 (60.50%), Query Frame = 0


Query: 29  ESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSK 88
           E  R +  ++T+++MLRDRGY I  S++ +T QQF   HG +   + L      R+D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 89  RILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWS--FKVEI 148
           ++ + F     V + T++    ++ +++   + IL+VQ  +T  A   +   S  F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRA-ILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 149 FQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ 208
           FQ  ++LVNI +H L P HQVLT EEK  LL++Y+++E QLPR+  TD IARY+GL++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 209 VVKVSYDGDMTRSHVTYRCV 227
           VVK+    +    +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of Tan0013544 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-25
Identity = 70/207 (33.82%), Postives = 117/207 (56.52%), Query Frame = 0


Query: 23  IDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQS---PDVDRLKLS 82
           + D  +E  R F  RRTVL+MLRDRGY I  SD++L  ++F +   ++    + + L +S
Sbjct: 1   MSDMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVS 60

Query: 83  VVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEG 142
                +P+ +I V +     V +  ++      +  D +H  I++V   IT  A  +V  
Sbjct: 61  ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120

Query: 143 WS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIA 202
            +    +E+F+  +L+ NI++H L   + VL ++ K KLL  Y++++ QLPR+L TD +A
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLA 180

Query: 203 RYYGLEKGQVVKVSYDGDMTRSHVTYR 225
           RYYGL++GQVVK+      +  + TYR
Sbjct: 181 RYYGLKRGQVVKIRRSDATSLDYYTYR 207

The following BLAST results are available for this feature:

BLAST of Tan0013544 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1J2	8.9e-74	60.00	DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE...	[more]
Q9ZVB9	1.8e-66	58.33	DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702...	[more]
Q9M1H8	2.6e-49	44.98	DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE...	[more]
O81098	1.9e-31	38.50	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
A8XGH1	3.5e-30	33.97	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]

BLAST of Tan0013544 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539155.1	8.8e-111	89.43	DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo]	[more]
XP_022971518.1	1.1e-110	89.43	DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita maxima]	[more]
XP_022950955.1	1.9e-110	89.43	DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata]	[more]
XP_038903402.1	1.3e-109	87.67	DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] >XP_038903403.1 DNA...	[more]
XP_022158561.1	1.3e-109	88.99	DNA-directed RNA polymerase V subunit 5A [Momordica charantia]	[more]

BLAST of Tan0013544 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I733	5.5e-111	89.43	DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1GH86	9.4e-111	89.43	DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A6J1E191	6.1e-110	88.99	DNA-directed RNA polymerase V subunit 5A OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1I260	3.7e-107	88.39	DNA-directed RNA polymerase V subunit 5A isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1GHB9	6.3e-107	88.39	DNA-directed RNA polymerase V subunit 5A isoform X1 OS=Cucurbita moschata OX=366...	[more]

BLAST of Tan0013544 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57080.1	6.3e-75	60.00	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT2G41340.1	1.3e-67	58.33	RNA polymerase II fifth largest subunit, D	[more]
AT3G54490.1	1.9e-50	44.98	RNA polymerase II fifth largest subunit, E	[more]
AT3G22320.1	1.3e-32	38.50	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	1.2e-25	33.82	RNA polymerase II fifth largest subunit, C	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 24..146 e-value: 9.7E-33 score: 115.0
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 29..148
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 22..217 e-value: 7.9E-65 score: 216.1
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 28..111 e-value: 7.1E-22 score: 77.8
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 147..216 e-value: 1.1E-23 score: 84.7
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 143..217
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 144..216 e-value: 1.3E-26 score: 92.2
None	No IPR available	PANTHER	PTHR10535:SF2	DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A	coord: 9..217
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 9..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013544.1	Tan0013544.1	mRNA
Tan0013544.2	Tan0013544.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0055029	nuclear DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity