Tan0013514 (gene) Snake gourd v1

Overview


Name	Tan0013514
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase
Location	LG05: 61475028 .. 61475946 (+)
RNA-Seq Expression	Tan0013514
Synteny	Tan0013514

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCATAAATATATGGGTTTATGATAAACTACATAAGAAGAAGCGTCGGGTGACTCTCAGAGTATCTTCTGATAAGAGAGATCGTAGGAAGACAGCAATCTCTACCTTCGTCAACTTCATCCATCAGAGGGATGCCTCTATAGCAATGAAAGTCGTTGAATTAATGCTTGATCATGGAGCACCCATATACACTGTACACGACAACTTTATAACAACAGCATCATATAGCAATTTTCTTCCTGATTATTATAGCAGCACCATTTGCGAGATGGGTCCTCCACTTCAAATCCTCAACGAGTTCATCCATATGAATGTTATTCAACCAATAGTGGGTGGACGCCCTGAGTCCCACTTTACCTGTAATGGTTTCTCATTAAATATGCTTCATTCATACTTAATGGCAAATATACCATCGGGAAAGATAAGCAGATGATGGCTACTTGGAATGAAAAAATCACAGGTATCGTGACCTCTTACGAGAAGTATATTCGTTATGTATGCGGGGATTCTAATCCTTCTTGGGAAGCTCATGTGAAAAAGTGGGATAACTTCCACTTTTCGGCAAAAATCCTTGAATTTGAGTTTCCTCCCGTATTGGTCTGCTCTACTGCAGCTTGTATCATTGCCTCAATCTCCATCTTTCCGAGAGGCTTCCCCATGGGGACCACTGAGCGATCATAGTATAACTCTTCCATAGGAGATTCATAAGCGAATCGCTTTCGAGGCCTCTCGGATTGCCCATTCATGAAATAAGGTGCAGGAGTTCTTTGCATCCGTAGAGGAGGCTCATCCATGATTGGGAATCGGAATGTGGGTACTTGACTGGATGCCCGCCCCCCCCATTGATCTTGGCTTGCTTCATTGCATTCATTCATTCTTTGTTTGATTCTTCGGGCTTCTTCCGATCCGCTTGA

mRNA sequence

ATGGAACCCATAAATATATGGGTTTATGATAAACTACATAAGAAGAAGCGTCGGGTGACTCTCAGAGTATCTTCTGATAAGAGAGATCGTAGGAAGACAGCAATCTCTACCTTCGTCAACTTCATCCATCAGAGGGATGCCTCTATAGCAATGAAAGTCGTTGAATTAATGCTTGATCATGGAGCACCCATATACACTGTACACGACAACTTTATAACAACAGCATCATATAGCAATTTTCTTCCTGATTATTATAGCAGCACCATTTGCGAGATGGGTCCTCCACTTCAAATCCTCAACGAGTTCATCCATATGAATAGGAGGCTCATCCATGATTGGGAATCGGAATGTGGGTACTTGACTGGATGCCCGCCCCCCCCATTGATCTTGGCTTGCTTCATTGCATTCATTCATTCTTTGTTTGATTCTTCGGGCTTCTTCCGATCCGCTTGA

Coding sequence (CDS)

ATGGAACCCATAAATATATGGGTTTATGATAAACTACATAAGAAGAAGCGTCGGGTGACTCTCAGAGTATCTTCTGATAAGAGAGATCGTAGGAAGACAGCAATCTCTACCTTCGTCAACTTCATCCATCAGAGGGATGCCTCTATAGCAATGAAAGTCGTTGAATTAATGCTTGATCATGGAGCACCCATATACACTGTACACGACAACTTTATAACAACAGCATCATATAGCAATTTTCTTCCTGATTATTATAGCAGCACCATTTGCGAGATGGGTCCTCCACTTCAAATCCTCAACGAGTTCATCCATATGAATAGGAGGCTCATCCATGATTGGGAATCGGAATGTGGGTACTTGACTGGATGCCCGCCCCCCCCATTGATCTTGGCTTGCTTCATTGCATTCATTCATTCTTTGTTTGATTCTTCGGGCTTCTTCCGATCCGCTTGA

Protein sequence

MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMNRRLIHDWESECGYLTGCPPPPLILACFIAFIHSLFDSSGFFRSA

Homology

[Close]

BLAST of Tan0013514 vs. ExPASy Swiss-Prot
Match: P10581 (Probable DNA-directed RNA polymerase OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 15  KKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELM--LDHGA--PIYTVHDN 74
           K     + +  +  D RK++ STF NFIHQ+DA  A+++V+ +  L++ +  PIY VHDN
Sbjct: 857 KTTSAKMLIPLNDNDIRKSSTSTFANFIHQKDAFTAIQLVDFINKLENASSIPIYAVHDN 916

Query: 75  FITTASYSNFLPDYYSSTICEMGPPLQILNEFI 104
           FIT   Y++ LP  Y  +I  MG PL I+N+F+
Sbjct: 917 FITMPEYASILPTLYRDSIFRMGHPLIIINKFL 949

[Close]

BLAST of Tan0013514 vs. NCBI nr
Match: CAB4289961.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 176.4 bits (446), Expect = 1.8e-40
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ 
Sbjct: 709 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 768

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
           GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILNEFI+MN
Sbjct: 769 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 814

[Close]

BLAST of Tan0013514 vs. NCBI nr
Match: CAB4293876.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 176.4 bits (446), Expect = 1.8e-40
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ 
Sbjct: 687 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 746

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
           GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILNEFI+MN
Sbjct: 747 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 792

[Close]

BLAST of Tan0013514 vs. NCBI nr
Match: CAB4263363.1 (unnamed protein product [Prunus armeniaca] >CAB4320324.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 176.4 bits (446), Expect = 1.8e-40
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ 
Sbjct: 709 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 768

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
           GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILNEFI+MN
Sbjct: 769 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 814

[Close]

BLAST of Tan0013514 vs. NCBI nr
Match: KAG6621672.1 (hypothetical protein I3842_Q008800, partial [Carya illinoinensis])

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-39
Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           M+PINIWVYD+LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML++
Sbjct: 705 MDPINIWVYDRLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVEAMLEN 764

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
             PIYTVHDNFITTA YSN +P  YS  I +MGPPL I+NEFI+MN
Sbjct: 765 SLPIYTVHDNFITTAEYSNLIPTIYSMVIRDMGPPLSIVNEFIYMN 810

[Close]

BLAST of Tan0013514 vs. NCBI nr
Match: XP_017985382.1 (PREDICTED: probable DNA-directed RNA polymerase [Theobroma cacao])

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-38
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           MEPINIWVYD+LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQ+DA IAM VVE ML  
Sbjct: 664 MEPINIWVYDRLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQKDAHIAMCVVEQMLSI 723

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
           GAPIYTVHDNFI+TA YS+ +P  YS+ IC M PPL ++NEFI+MN
Sbjct: 724 GAPIYTVHDNFISTAQYSDLIPSIYSNVICNMDPPLSVINEFIYMN 769

[Close]

BLAST of Tan0013514 vs. ExPASy TrEMBL
Match: A0A6J5Y9W3 (DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS3511 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.9e-41
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ 
Sbjct: 709 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 768

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
           GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILNEFI+MN
Sbjct: 769 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 814

[Close]

BLAST of Tan0013514 vs. ExPASy TrEMBL
Match: A0A6J5VXK4 (DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3296 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.9e-41
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ 
Sbjct: 687 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 746

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
           GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILNEFI+MN
Sbjct: 747 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 792

[Close]

BLAST of Tan0013514 vs. ExPASy TrEMBL
Match: A0A6J5VPQ6 (Multifunctional fusion protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49732 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.9e-41
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ 
Sbjct: 709 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 768

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
           GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILNEFI+MN
Sbjct: 769 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 814

[Close]

BLAST of Tan0013514 vs. ExPASy TrEMBL
Match: A0A101M3N5 (DNA-directed RNA polymerase OS=Picea glauca OX=3330 GN=rpo PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.4e-38
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           M PINIW YD LHKK+ RVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ 
Sbjct: 571 MVPINIWFYDGLHKKRHRVTLRVSSSKRDRRKTDISTFVNFIHQRDAHIAMKVVERMLEK 630

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
           GAPIYTVHDNFITTA Y++ LP  Y   IC+MGPPL ILNEFI+MN
Sbjct: 631 GAPIYTVHDNFITTAEYTHDLPRIYIKVICDMGPPLSILNEFIYMN 676

[Close]

BLAST of Tan0013514 vs. ExPASy TrEMBL
Match: A0A6B9XVF7 (DNA-directed RNA polymerase OS=Picea sitchensis OX=3332 GN=ymfrpo PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.4e-38
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
           M PINIW YD LHKK+ RVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ 
Sbjct: 571 MVPINIWFYDGLHKKRHRVTLRVSSSKRDRRKTDISTFVNFIHQRDAHIAMKVVERMLEK 630

Query: 61  GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
           GAPIYTVHDNFITTA Y++ LP  Y   IC+MGPPL ILNEFI+MN
Sbjct: 631 GAPIYTVHDNFITTAEYTHDLPRIYIKVICDMGPPLSILNEFIYMN 676

The following BLAST results are available for this feature:

BLAST of Tan0013514 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10581	2.2e-12	41.94	Probable DNA-directed RNA polymerase OS=Zea mays OX=4577 PE=3 SV=1	[more]

BLAST of Tan0013514 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4289961.1	1.8e-40	81.13	unnamed protein product [Prunus armeniaca]	[more]
CAB4293876.1	1.8e-40	81.13	unnamed protein product [Prunus armeniaca]	[more]
CAB4263363.1	1.8e-40	81.13	unnamed protein product [Prunus armeniaca] >CAB4320324.1 unnamed protein product...	[more]
KAG6621672.1	2.7e-39	78.30	hypothetical protein I3842_Q008800, partial [Carya illinoinensis]	[more]
XP_017985382.1	1.7e-38	76.42	PREDICTED: probable DNA-directed RNA polymerase [Theobroma cacao]	[more]

BLAST of Tan0013514 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5Y9W3	8.9e-41	81.13	DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS3511 PE=...	[more]
A0A6J5VXK4	8.9e-41	81.13	DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3296 ...	[more]
A0A6J5VPQ6	8.9e-41	81.13	Multifunctional fusion protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49732...	[more]
A0A101M3N5	2.4e-38	78.30	DNA-directed RNA polymerase OS=Picea glauca OX=3330 GN=rpo PE=3 SV=1	[more]
A0A6B9XVF7	2.4e-38	78.30	DNA-directed RNA polymerase OS=Picea sitchensis OX=3332 GN=ymfrpo PE=3 SV=1	[more]

BLAST of Tan0013514 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002092	DNA-directed RNA polymerase, phage-type	PFAM	PF00940	RNA_pol	coord: 23..78 e-value: 1.2E-5 score: 24.3
IPR002092	DNA-directed RNA polymerase, phage-type	PANTHER	PTHR10102	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	coord: 17..107
None	No IPR available	PANTHER	PTHR10102:SF8	DNA-DIRECTED RNA POLYMERASE	coord: 17..107
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013514.1	Tan0013514.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006260	DNA replication
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0000166	nucleotide binding