Tan0013486 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCGATCGAGGTGCCATATCCATGGTCGACGAAGCAGCGGGCAGTGATCCACGAACTGGAGTATCTCCGATCGAACTCGATCGAGACGATCACGGGGGAAGTGAAATGCAAACAATGTGGAAGAAAGTACATGATGGAGTACGATCTGATGACAAAGTTGGATGAGGTAAGAAGATTTATAGAGGAGAACAAGGATATATTGCACGATAGAGCTCCAAATTCATGGGAAATGCCTGTTTTACCAAACTGCAAATTGTGTAAAAAAGAAAAATGTGTAGAGCCGGTGATACCTGAAGAAGACGATGATGAAAATTATAGCAAAATCAATTGGCTTTTTTTGCTTTTGGGCCAAACGCTTGGACGTTTGAAACTCAAACAACTTAAATATTACTGCGCTCAAACCAACAATCATCAAACTGGCGCCAAGGATCGCCTTATTTATACCGTTTATCTTTCTTTGTGTAACCAACTTCAACCCTCCAACCAACTCTTCCATCATCGCTGA ATGCCGATCGAGGTGCCATATCCATGGTCGACGAAGCAGCGGGCAGTGATCCACGAACTGGAGTATCTCCGATCGAACTCGATCGAGACGATCACGGGGGAAGTGAAATGCAAACAATGTGGAAGAAAGTACATGATGGAGTACGATCTGATGACAAAGTTGGATGAGGTAAGAAGATTTATAGAGGAGAACAAGGATATATTGCACGATAGAGCTCCAAATTCATGGGAAATGCCTGTTTTACCAAACTGCAAATTGTGTAAAAAAGAAAAATGTGTAGAGCCGGTGATACCTGAAGAAGACGATGATGAAAATTATAGCAAAATCAATTGGCTTTTTTTGCTTTTGGGCCAAACGCTTGGACGTTTGAAACTCAAACAACTTAAATATTACTGCGCTCAAACCAACAATCATCAAACTGGCGCCAAGGATCGCCTTATTTATACCGTTTATCTTTCTTTGTGTAACCAACTTCAACCCTCCAACCAACTCTTCCATCATCGCTGA ATGCCGATCGAGGTGCCATATCCATGGTCGACGAAGCAGCGGGCAGTGATCCACGAACTGGAGTATCTCCGATCGAACTCGATCGAGACGATCACGGGGGAAGTGAAATGCAAACAATGTGGAAGAAAGTACATGATGGAGTACGATCTGATGACAAAGTTGGATGAGGTAAGAAGATTTATAGAGGAGAACAAGGATATATTGCACGATAGAGCTCCAAATTCATGGGAAATGCCTGTTTTACCAAACTGCAAATTGTGTAAAAAAGAAAAATGTGTAGAGCCGGTGATACCTGAAGAAGACGATGATGAAAATTATAGCAAAATCAATTGGCTTTTTTTGCTTTTGGGCCAAACGCTTGGACGTTTGAAACTCAAACAACTTAAATATTACTGCGCTCAAACCAACAATCATCAAACTGGCGCCAAGGATCGCCTTATTTATACCGTTTATCTTTCTTTGTGTAACCAACTTCAACCCTCCAACCAACTCTTCCATCATCGCTGA MPIEVPYPWSTKQRAVIHELEYLRSNSIETITGEVKCKQCGRKYMMEYDLMTKLDEVRRFIEENKDILHDRAPNSWEMPVLPNCKLCKKEKCVEPVIPEEDDDENYSKINWLFLLLGQTLGRLKLKQLKYYCAQTNNHQTGAKDRLIYTVYLSLCNQLQPSNQLFHHR Homology
BLAST of Tan0013486 vs. NCBI nr
Match: XP_038895979.1 (junction-mediating and -regulatory protein-like [Benincasa hispida]) HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61 Identity = 115/163 (70.55%), Postives = 135/163 (82.82%), Query Frame = 0
BLAST of Tan0013486 vs. NCBI nr
Match: KAG7011696.1 (hypothetical protein SDJN02_26602, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 246.1 bits (627), Expect = 2.1e-61 Identity = 108/164 (65.85%), Postives = 136/164 (82.93%), Query Frame = 0
BLAST of Tan0013486 vs. NCBI nr
Match: XP_022135938.1 (probable serine/threonine-protein kinase samkC [Momordica charantia]) HSP 1 Score: 245.7 bits (626), Expect = 2.8e-61 Identity = 108/164 (65.85%), Postives = 130/164 (79.27%), Query Frame = 0
BLAST of Tan0013486 vs. NCBI nr
Match: KAG6572024.1 (hypothetical protein SDJN03_28752, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 245.4 bits (625), Expect = 3.6e-61 Identity = 108/164 (65.85%), Postives = 136/164 (82.93%), Query Frame = 0
BLAST of Tan0013486 vs. NCBI nr
Match: XP_022953023.1 (mucin-16-like [Cucurbita moschata]) HSP 1 Score: 245.4 bits (625), Expect = 3.6e-61 Identity = 108/164 (65.85%), Postives = 136/164 (82.93%), Query Frame = 0
BLAST of Tan0013486 vs. ExPASy TrEMBL
Match: A0A6J1C690 (probable serine/threonine-protein kinase samkC OS=Momordica charantia OX=3673 GN=LOC111007769 PE=4 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 1.3e-61 Identity = 108/164 (65.85%), Postives = 130/164 (79.27%), Query Frame = 0
BLAST of Tan0013486 vs. ExPASy TrEMBL
Match: A0A6J1GM83 (mucin-16-like OS=Cucurbita moschata OX=3662 GN=LOC111455541 PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 1.7e-61 Identity = 108/164 (65.85%), Postives = 136/164 (82.93%), Query Frame = 0
BLAST of Tan0013486 vs. ExPASy TrEMBL
Match: A0A6J1I8I0 (uncharacterized protein KIAA0754-like OS=Cucurbita maxima OX=3661 GN=LOC111470967 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60 Identity = 106/164 (64.63%), Postives = 134/164 (81.71%), Query Frame = 0
BLAST of Tan0013486 vs. ExPASy TrEMBL
Match: A0A6J1C462 (uncharacterized protein LOC111007768 OS=Momordica charantia OX=3673 GN=LOC111007768 PE=4 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 1.4e-55 Identity = 102/165 (61.82%), Postives = 127/165 (76.97%), Query Frame = 0
BLAST of Tan0013486 vs. ExPASy TrEMBL
Match: A0A1S3AZB1 (protein PAF1 homolog OS=Cucumis melo OX=3656 GN=LOC103484199 PE=4 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53 Identity = 105/164 (64.02%), Postives = 127/164 (77.44%), Query Frame = 0
BLAST of Tan0013486 vs. TAIR 10
Match: AT1G49330.1 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 166.8 bits (421), Expect = 1.5e-41 Identity = 80/163 (49.08%), Postives = 103/163 (63.19%), Query Frame = 0
BLAST of Tan0013486 vs. TAIR 10
Match: AT2G16190.1 (BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1); Has 77 Blast hits to 77 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants - 56; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 147.9 bits (372), Expect = 7.3e-36 Identity = 72/155 (46.45%), Postives = 97/155 (62.58%), Query Frame = 0
BLAST of Tan0013486 vs. TAIR 10
Match: AT2G16190.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 105.1 bits (261), Expect = 5.4e-23 Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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