Tan0013476 (gene) Snake gourd v1

Overview


Name	Tan0013476
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Nucleolar protein 16
Location	LG06: 6744681 .. 6746153 (-)
RNA-Seq Expression	Tan0013476
Synteny	Tan0013476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGCCAAAAGTCAAGGTCGGCCTGCCCAAAAGACACCCCAATGTTTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTTCGCTCCTTGCTCGCCGAACAATTTGAAGAGGATCCCTCATGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGCTCCCGCACTGATCACATCGTTGAGAACGACTCTCTCCAGGTCCCGCCGTCTCAGCCACCTTCCGATGACCCTGCCGGTAGCGATGTGGAAGAAGACGGTGAGTTTGAGTTTGTTTCTGTTAGTACCCCTTATGAATCTGTCTGGGTTTCGTGGAATTTTTGGATTTGATATGAGCTGAATGGTTTGAGGGTTGATAATGTGACGTTTTCAAATTTCAAGTATATTTGTTTGGATGAAACTAAGGTTTTATAAAATATGATGCTTTCTGCTCCAGCTTTAGTGAATGATCACTTGCAATAGTTTATGCAACACTGTTGATTGTTTGGTGTTCTTGACCTGGAAGGATTTGAAGCTTGGCAAAATTTCTGAATAGCTTTAATTAGACTATATTGATATAATTAAATTTACTCAATCTATCTGTTTAATCTTTTGGGTTGATTGTTGATCTAAGATGGTATTAGATCTGGAGGTCCTGAATCAAACTCCGTAAGGTCATTTCCTCCCAAATTAATATTGATTTTTCTTCTACTTATTTAGCTTTTTGTCAAATTTCTAAGCCCCATAAGTGATAAGTGAGGGGAGTGTTAGACTATATTGATCCCTAGAAAGTCGTTTTCTCCTCAATTAATATTGATTTCTAACTGTTTGGTTTTTCTTCAAATTTCTAAATCCATAAGTGAGGGGAGGGGTGGAGGGGTGATTTAAGAACTTTGAATCAAAATAGCCGTTCAAATGGGTTGAATTTAGTTGGCCATTTATCATGTTTTGGCAACCTAGGTGTTTGTGAAGAAATAATAAACTGAGATAGAATGACGATTGATTTGCTTGCAATGTCTTATTGTATGAAGGCTCATGAGGATGTCAATGCAAAGTTTTGAGTTTTGTTTCTGAGTGGATCTTGTGCTGATTCTGCGTTCTATCTTTTGTGTTCTTTAGATTTGAAAACAGCACTGGGAAAGAAGCGCAAAGATGGGAAATCTGGACCTCTAAAGCCATTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATATGGAGACGATTATGAGGTAAGCTTCAGTTTTACTTGCTCTTAGAACTGCTCGATTGGCTCTTGTCTCACTGAATGTTGTTCTGCAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCATTGATATTGATTCGTTAA

mRNA sequence

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGCCAAAAGTCAAGGTCGGCCTGCCCAAAAGACACCCCAATGTTTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTTCGCTCCTTGCTCGCCGAACAATTTGAAGAGGATCCCTCATGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGCTCCCGCACTGATCACATCGTTGAGAACGACTCTCTCCAGGTCCCGCCGTCTCAGCCACCTTCCGATGACCCTGCCGGTAGCGATGTGGAAGAAGACGATTTGAAAACAGCACTGGGAAAGAAGCGCAAAGATGGGAAATCTGGACCTCTAAAGCCATTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATATGGAGACGATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCATTGATATTGATTCGTTAA

Coding sequence (CDS)

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGCCAAAAGTCAAGGTCGGCCTGCCCAAAAGACACCCCAATGTTTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTTCGCTCCTTGCTCGCCGAACAATTTGAAGAGGATCCCTCATGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGCTCCCGCACTGATCACATCGTTGAGAACGACTCTCTCCAGGTCCCGCCGTCTCAGCCACCTTCCGATGACCCTGCCGGTAGCGATGTGGAAGAAGACGATTTGAAAACAGCACTGGGAAAGAAGCGCAAAGATGGGAAATCTGGACCTCTAAAGCCATTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATATGGAGACGATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCATTGATATTGATTCGTTAA

Protein sequence

MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDPAGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

Homology

[Close]

BLAST of Tan0013476 vs. NCBI nr
Match: XP_038898931.1 (nucleolar protein 16 [Benincasa hispida])

HSP 1 Score: 359.8 bits (922), Expect = 1.5e-95
Identity = 178/193 (92.23%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDP+WD+KA VIHN
Sbjct: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDDKARVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP------AGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVE+DSLQVPPSQPPSD+P      +GSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPPSDEPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKS PL+PLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 188
           HSCLDKNPLILIR
Sbjct: 181 HSCLDKNPLILIR 193

[Close]

BLAST of Tan0013476 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 352.8 bits (904), Expect = 1.8e-93
Identity = 177/193 (91.71%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP------AGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVE+DSLQVPPS PPSDDP      +GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 188
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Tan0013476 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 6.8e-93
Identity = 176/193 (91.19%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP------AGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVE+DSLQVPPS PPSDDP      +GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 188
           H CLDKNPLIL R
Sbjct: 181 HCCLDKNPLILTR 193

[Close]

BLAST of Tan0013476 vs. NCBI nr
Match: XP_022954094.1 (uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothetical protein SDJN03_26473, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.4 bits (895), Expect = 2.0e-92
Identity = 175/193 (90.67%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP------AGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVE+D LQVPPS PPSDDP      +GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 188
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Tan0013476 vs. NCBI nr
Match: KAG7014368.1 (hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 345.9 bits (886), Expect = 2.2e-91
Identity = 174/193 (90.16%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP------AGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVE+D LQVPPS PPSDDP      +GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+ GKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 188
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Tan0013476 vs. ExPASy TrEMBL
Match: A0A6J1JMQ4 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.6e-94
Identity = 177/193 (91.71%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP------AGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVE+DSLQVPPS PPSDDP      +GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 188
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Tan0013476 vs. ExPASy TrEMBL
Match: A0A6J1GRW5 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.6e-93
Identity = 175/193 (90.67%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP------AGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVE+D LQVPPS PPSDDP      +GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 188
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Tan0013476 vs. ExPASy TrEMBL
Match: A0A5A7VLA5 (Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00570 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.4e-90
Identity = 168/189 (88.89%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSD--DPAGSDVEEDDLKTALGKKR 120
           YKSFGV+SNPNLLSVRSRTDHIVE+DSLQVPPS  P    D +GSDVEEDDLKTALGKKR
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVLDSSGSDVEEDDLKTALGKKR 120

Query: 121 KDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCL 180
           KDGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSCL
Sbjct: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCL 180

Query: 181 DKNPLILIR 188
           DKNPLIL R
Sbjct: 181 DKNPLILTR 189

[Close]

BLAST of Tan0013476 vs. ExPASy TrEMBL
Match: A0A1S3BSM4 (Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.4e-90
Identity = 168/189 (88.89%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSD--DPAGSDVEEDDLKTALGKKR 120
           YKSFGV+SNPNLLSVRSRTDHIVE+DSLQVPPS  P    D +GSDVEEDDLKTALGKKR
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVLDSSGSDVEEDDLKTALGKKR 120

Query: 121 KDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCL 180
           KDGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSCL
Sbjct: 121 KDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCL 180

Query: 181 DKNPLILIR 188
           DKNPLIL R
Sbjct: 181 DKNPLILTR 189

[Close]

BLAST of Tan0013476 vs. ExPASy TrEMBL
Match: A0A6J1H6M6 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111460931 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.8e-89
Identity = 172/189 (91.01%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           MGRSRRKYKRSRPKV+VGLPKRHPNVFKPSFCMPPKLRSLL EQFEEDP+WDEKASVI+N
Sbjct: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSD--DPAGSDVEEDDLKTALGKKR 120
           YKSFGVLSNPNLLSVRSRTDHIVE+DSLQVP SQ PSD  D +GSDVEEDDLKTALGKKR
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGLDSSGSDVEEDDLKTALGKKR 120

Query: 121 KDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCL 180
           +DGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSV TLEKLCKRYHS  
Sbjct: 121 RDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSS- 180

Query: 181 DKNPLILIR 188
            KNPLIL R
Sbjct: 181 GKNPLILTR 188

[Close]

BLAST of Tan0013476 vs. TAIR 10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-66
Identity = 122/195 (62.56%), Postives = 156/195 (80.00%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHN 60
           M RSRRKY+ SR KV+V LPK++PN+FKP+F  PPKLR+L+    ++ P WD++ASVI N
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMG---DDVPEWDDQASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPS-QPPSDDP---------AGSDVEEDDL 120
           YKSFGV+SNPNLL +R+RTDH++++DSL VPP  +PP+DDP         +GS++EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKL 180
           KTALGK+RKDGKS PL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYHSCLDKNPLIL 186
           C RY    DKNP+++
Sbjct: 181 CTRYQIYKDKNPILV 192

The following BLAST results are available for this feature:

BLAST of Tan0013476 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013476 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898931.1	1.5e-95	92.23	nucleolar protein 16 [Benincasa hispida]	[more]
XP_022991747.1	1.8e-93	91.71	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_023547523.1	6.8e-93	91.19	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]
XP_022954094.1	2.0e-92	90.67	uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothet...	[more]
KAG7014368.1	2.2e-91	90.16	hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Tan0013476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMQ4	8.6e-94	91.71	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1	[more]
A0A6J1GRW5	9.6e-93	90.67	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1	[more]
A0A5A7VLA5	4.4e-90	88.89	Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BSM4	4.4e-90	88.89	Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1	[more]
A0A6J1H6M6	3.8e-89	91.01	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111460931 PE=3 SV=1	[more]

BLAST of Tan0013476 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02870.1	2.0e-66	62.56	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019002	Ribosome biogenesis protein Nop16	PFAM	PF09420	Nop16	coord: 3..82 e-value: 9.9E-6 score: 25.7 coord: 104..175 e-value: 3.3E-17 score: 63.2
IPR019002	Ribosome biogenesis protein Nop16	PANTHER	PTHR13243	HSPC111 PROTEIN-RELATED	coord: 1..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013476.1	Tan0013476.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus