Tan0013349 (gene) Snake gourd v1

Overview


Name	Tan0013349
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	nuclear transcription factor Y subunit C-1-like
Location	LG01: 11468024 .. 11468395 (+)
RNA-Seq Expression	Tan0013349
Synteny	Tan0013349

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCGCTGCCGTTGGCGAGGATCAAGAAGATCATGAAGAAATCCGGCGAGGACGTGAAGATGATTTCCGGCGAGGCTCCGATCGTCTTCTCGAAGGCGTGTGAGCTCTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCGATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCCATGAAACCGGCACCGGCGGCGATCTTGCTGAAAGTGAAACTGTGTCCATGCCTGTGGAGATGAGGTTCTTGCAGTCCTGA

mRNA sequence

ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCGCTGCCGTTGGCGAGGATCAAGAAGATCATGAAGAAATCCGGCGAGGACGTGAAGATGATTTCCGGCGAGGCTCCGATCGTCTTCTCGAAGGCGTGTGAGCTCTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCGATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCCATGAAACCGGCACCGGCGGCGATCTTGCTGAAAGTGAAACTGTGTCCATGCCTGTGGAGATGAGGTTCTTGCAGTCCTGA

Coding sequence (CDS)

ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCGCTGCCGTTGGCGAGGATCAAGAAGATCATGAAGAAATCCGGCGAGGACGTGAAGATGATTTCCGGCGAGGCTCCGATCGTCTTCTCGAAGGCGTGTGAGCTCTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCGATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCCATGAAACCGGCACCGGCGGCGATCTTGCTGAAAGTGAAACTGTGTCCATGCCTGTGGAGATGAGGTTCTTGCAGTCCTGA

Protein sequence

MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGTGGDLAESETVSMPVEMRFLQS

Homology

[Close]

BLAST of Tan0013349 vs. ExPASy Swiss-Prot
Match: Q9FMV5 (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.5e-22
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLIFHE 100
           D+A+AI  TD+FDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

[Close]

BLAST of Tan0013349 vs. ExPASy Swiss-Prot
Match: Q655V5 (Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.5e-22
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MIS EAP++F+KACE+FI ELT RSWM   ++K+R L K 
Sbjct: 100 HSLPLARIKKIM-KADEDVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKN 159

Query: 78  DVASAILATDVFDFLIGLI----FHETGTGGDLAESETVSMPVE 118
           D+A+AI  TD++DFL+ ++      E G G   A    + +P +
Sbjct: 160 DIAAAITRTDMYDFLVDIVPRDDLKEEGVGLPRAGLPPLGVPAD 202

[Close]

BLAST of Tan0013349 vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TD+FDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Tan0013349 vs. ExPASy Swiss-Prot
Match: A6BLW4 (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MIS EAP++F+KACELFI ELT RSW+ A ++K+R L + 
Sbjct: 68  HQLPLARIKKIM-KADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRN 127

Query: 78  DVASAILATDVFDFLIGLIFHE 100
           DVA+AI  TDVFDFL+ ++  E
Sbjct: 128 DVAAAIARTDVFDFLVDIVPRE 148

[Close]

BLAST of Tan0013349 vs. ExPASy Swiss-Prot
Match: Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-21
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLI----FHETGTGGDLAESETVS 114
           D+A+A+  TD+FDFL+ ++      +   GG  AE+ T +
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAA 167

[Close]

BLAST of Tan0013349 vs. NCBI nr
Match: XP_023552994.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.6 bits (566), Expect = 1.8e-54
Identity = 116/129 (89.92%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGT-----GGDLAESETVSMP 120
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIFHET T      GDLAESET+S+P
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTPAASAAGDLAESETMSIP 120

Query: 121 VEMR-FLQS 124
           VEMR FLQS
Sbjct: 121 VEMRPFLQS 129

[Close]

BLAST of Tan0013349 vs. NCBI nr
Match: XP_022985461.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita maxima])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 113/132 (85.61%), Postives = 117/132 (88.64%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGT--------GGDLAESETV 120
           RSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIFHET T         GDL ESET+
Sbjct: 61  RSWMIAMHSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASASAAGDLPESETM 120

Query: 121 SMPVEMR-FLQS 124
           S+P+EMR FLQS
Sbjct: 121 SIPLEMRPFLQS 132

[Close]

BLAST of Tan0013349 vs. NCBI nr
Match: XP_022136847.1 (nuclear transcription factor Y subunit C-1-like [Momordica charantia])

HSP 1 Score: 213.8 bits (543), Expect = 8.5e-52
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV+YWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTR 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGTGGDLAESETVSMPVEMRF 120
           RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE  + G++A+  TVSMP+EM F
Sbjct: 61  RSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE--SAGEIADETTVSMPMEMSF 118

[Close]

BLAST of Tan0013349 vs. NCBI nr
Match: KAG6577185.1 (hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.8 bits (543), Expect = 8.5e-52
Identity = 111/130 (85.38%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1    MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
            MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELTK
Sbjct: 1084 MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 1143

Query: 61   RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGT------GGDLAESETVSM 120
            RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIFHET T        +L ESET+S+
Sbjct: 1144 RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 1203

Query: 121  PVEMR-FLQS 124
            PVEM  FLQS
Sbjct: 1204 PVEMSPFLQS 1213

[Close]

BLAST of Tan0013349 vs. NCBI nr
Match: XP_022931515.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita moschata] >KAG7015184.1 Nuclear transcription factor Y subunit C-4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.8 bits (543), Expect = 8.5e-52
Identity = 111/130 (85.38%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGT------GGDLAESETVSM 120
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIFHET T        +L ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120

Query: 121 PVEMR-FLQS 124
           PVEM  FLQS
Sbjct: 121 PVEMSPFLQS 130

[Close]

BLAST of Tan0013349 vs. ExPASy TrEMBL
Match: A0A6J1J883 (nuclear transcription factor Y subunit C-4-like OS=Cucurbita maxima OX=3661 GN=LOC111483463 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.4e-53
Identity = 113/132 (85.61%), Postives = 117/132 (88.64%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGT--------GGDLAESETV 120
           RSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIFHET T         GDL ESET+
Sbjct: 61  RSWMIAMHSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASASAAGDLPESETM 120

Query: 121 SMPVEMR-FLQS 124
           S+P+EMR FLQS
Sbjct: 121 SIPLEMRPFLQS 132

[Close]

BLAST of Tan0013349 vs. ExPASy TrEMBL
Match: A0A6J1C6K6 (nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 GN=LOC111008442 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.1e-52
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV+YWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTR 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGTGGDLAESETVSMPVEMRF 120
           RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE  + G++A+  TVSMP+EM F
Sbjct: 61  RSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE--SAGEIADETTVSMPMEMSF 118

[Close]

BLAST of Tan0013349 vs. ExPASy TrEMBL
Match: A0A6J1EZM2 (nuclear transcription factor Y subunit C-4-like OS=Cucurbita moschata OX=3662 GN=LOC111437669 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.1e-52
Identity = 111/130 (85.38%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGT------GGDLAESETVSM 120
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIFHET T        +L ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120

Query: 121 PVEMR-FLQS 124
           PVEM  FLQS
Sbjct: 121 PVEMSPFLQS 130

[Close]

BLAST of Tan0013349 vs. ExPASy TrEMBL
Match: A0A0A0KZN6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049050 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.6e-51
Identity = 107/117 (91.45%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGT---GGDLAESETVSM 115
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET T    GDL ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISV 117

[Close]

BLAST of Tan0013349 vs. ExPASy TrEMBL
Match: A0A5A7TSI3 (Nuclear transcription factor Y subunit C-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004550 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET-GTGGDLAESETVSM 115
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET  T GD+ ESE +S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATAGDVGESENISV 115

[Close]

BLAST of Tan0013349 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 104.4 bits (259), Expect = 6.8e-23
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLIFHE 100
           D+A+AI  TD+FDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

[Close]

BLAST of Tan0013349 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 104.4 bits (259), Expect = 6.8e-23
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLIFHE 100
           D+A+AI  TD+FDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

[Close]

BLAST of Tan0013349 vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 )

HSP 1 Score: 104.0 bits (258), Expect = 8.8e-23
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TD+FDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Tan0013349 vs. TAIR 10
Match: AT1G08970.4 (nuclear factor Y, subunit C9 )

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-22
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 79  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDVFDFLIGLIFHETGTGGDLAESETVSMP 116
           D+A+A+  TD+FDFL+ ++  E     DL +    S+P
Sbjct: 139 DIAAAVTRTDIFDFLVDIVPRE-----DLRDEVLGSIP 170

[Close]

BLAST of Tan0013349 vs. TAIR 10
Match: AT1G54830.2 (nuclear factor Y, subunit C3 )

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-22
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLI----FHETGTGGDLAESETVS 114
           D+A+A+  TD+FDFL+ ++      +   GG  AE+ T +
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAA 167

The following BLAST results are available for this feature:

BLAST of Tan0013349 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMV5	9.5e-22	63.41	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q655V5	9.5e-22	51.92	Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9SMP0	1.2e-21	64.56	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
A6BLW4	1.6e-21	63.41	Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9ZVL3	3.6e-21	53.00	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Tan0013349 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552994.1	1.8e-54	89.92	nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985461.1	1.3e-52	85.61	nuclear transcription factor Y subunit C-4-like [Cucurbita maxima]	[more]
XP_022136847.1	8.5e-52	87.50	nuclear transcription factor Y subunit C-1-like [Momordica charantia]	[more]
KAG6577185.1	8.5e-52	85.38	hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931515.1	8.5e-52	85.38	nuclear transcription factor Y subunit C-4-like [Cucurbita moschata] >KAG7015184...	[more]

BLAST of Tan0013349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J883	6.4e-53	85.61	nuclear transcription factor Y subunit C-4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1C6K6	4.1e-52	87.50	nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 G...	[more]
A0A6J1EZM2	4.1e-52	85.38	nuclear transcription factor Y subunit C-4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KZN6	4.6e-51	91.45	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0490...	[more]
A0A5A7TSI3	1.3e-50	91.30	Nuclear transcription factor Y subunit C-1-like OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Tan0013349 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63470.1	6.8e-23	63.41	nuclear factor Y, subunit C4	[more]
AT5G63470.2	6.8e-23	63.41	nuclear factor Y, subunit C4	[more]
AT3G48590.1	8.8e-23	64.56	nuclear factor Y, subunit C1	[more]
AT1G08970.4	2.6e-22	54.08	nuclear factor Y, subunit C9	[more]
AT1G54830.2	2.6e-22	53.00	nuclear factor Y, subunit C3	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..97 e-value: 9.4E-31 score: 108.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 15..92
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 19..83 e-value: 1.2E-18 score: 67.1
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 1..102
None	No IPR available	PANTHER	PTHR10252:SF41	HAP5 SUBUNIT OF HAP COMPLEX	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013349.1	Tan0013349.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity