Tan0013296 (gene) Snake gourd v1

Overview


Name	Tan0013296
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	TATA-binding protein-associated factor 2N-like
Location	LG04: 85237751 .. 85240454 (-)
RNA-Seq Expression	Tan0013296
Synteny	Tan0013296

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCCTCTATATAAAACGCCCTCTTCCCTTCTTTACCTATTCCATCGCCATTCTTCTTCTTCTTCTTTAACCAGCCATTTCTTTTACCTCCTTAACATTTTTTTCCCCTTTAAGGTTTGTTCTTCATCTTAGCTTCTTTTATTTTTTCATCATTTTTCTTTGGAATTTTAGAATGTTTTTGGTACGCTATGTTTTATTCTTTTTTTGTATTTGGTAGGTTCTTAAACTTTAAGAATGTAGACTAAAATATCTTTTACTTTAATTTCGTTGTGTCTATTGGGTCGGTGAATTTTAAAAGGTGTCGTGTACTTTTGTGTCTAATAAAAGTCAAATCATGTCTCGTGAATCAAAGACTTGTTAGACATAAAATTGAAAATTTAAAAACCTATCGATATAGTTTAAAGTTTAAAGATCTATTTCCACATTTCTAACCGTTTATGTCCCGTTTTTGTTTTGTACTTGTTTTCTCATCGAAAAACATTAGAATCCTTAACAAAATTAAAAAAACAAAAACAACGGTTTGAAAACTATTTTTTTTAGTTTTCAAAACTTTGCCTAATTTTTGAAAATATTGATAAAAAATAGTTGACAAAACACAAAATGACTTCATTCTCATCAACCAACTAATTATCAAACGGAGTTGTTAAGGACTAACCTTGGATTATTCAACCATCTTTTCTATTCAAAATAAATAAAGAAAAATAAACAGAGTTTTATTGTGTTTTCTCTCTCCTTGTCGTCTCTCCTTGTCGTCAAGAATTAAATGGTAGAGAGTGAGATTTCGAAACAACCAACCCCTTTGCATTTTAAATTTTTTTAAAAAATCAAATTTTTACTTAAAATTATTGTTGTTATTATTATTATTATATTTCATAGATAAAAATGATAAATGAATATATATATATATATATATATTTTTTTTTTTTTTGTTGACAATAAGAAAGTAATTTTTTCAGAGAGAGAAAGAGAAGATGAGCAGACCGGGAGACTGGAACTGCAGGTCGTGCCAGCATCTGAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGCGACCCGAAATCCGACTTCGGCGGTCTGTTGAACGGCGGTGGAAGAGGCGGTTCTGGATTCGGGTACGGCGGCTCCGATGTCAGGCCCGGAGACTGGTACTGCAGCATCGGTAACTGTGGAGCCCACAATTTCGCAAGCCGGTCCAGCTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCTGCAGCAGGAGCCTTCGATTTCGACATGTCGCGCTCTAGAGGAATTTCCCCTTTTGCTTTTCCCAGTCCCGCCCGTACTGCTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGTGCCAGGTACCCTTTTAAAAAAACAAAATTAAAAAAAAAATAACCATTTAGTCTTTGAATTTTCCCTGGGTCGTGGTTGGTTAGTAAGAATTTTCGACCGAGGCTCGTGAAATTTTGTATAATATTTACCTTCTTATCGATTAATCTCCTGTCGATCACTATTATGTTTTCGATAAGAAAATTAGATTAAGAGGATAGATTTTTTTTTACAAAAACAAAAGAAATAATTATCAAATTTTTAGTGGTGATTAATAAAAAAGAAAGAAATAATTTTTCATGACAATACTAAATTGTAACGTATGAAAGGACAAAATGGTTAAATTAAGAAAGTAAGTGGAGTTTTTTTTTTACCTTAACTTTAATTTTTTTTGGGGGGGAGGTAAAAATAATTATTTTCAATTTCAACCATTTTAATATCATTCTTTAAACTCATTACTTCAATTTATAAAGTTAAAAGTTTCTCAAATCATATTTATTAATGAATGCTTTTTCTTATTTGAGATAGTAAATTCGAAGTTTTAACTTCTTAATCGATGGTATAAATCAATTATCGCTAAACTAGACTCACTTTTGACTATTAATGAGTATGAATCTTAATACGCAAGAAATCGTCTTTTTTTACTTTAACAAATGATTCTTATGTATACTTGTGTCGCTACTATATTTAATAAACAAGTATAGTAATGTCTCTCTTGATAAACACATAAAAAAGTAAACCAATTTGAATCACGTTGGACAAACAATATTATGATTGTTATCTTTTTGCATGCGCGGATTTATCAAATTTAAACATTTAAAAGCTTTGATTACTCAATTTAATTTTTAATAATGTATCTATCTATCTATCTATTTCTAATTTTTCATACGAATAATTAATATAGGTCGGGATGCAATGAACATAACTTTGCTAGCAGAATGGAATGCTTTCGATGCAGCGCTCCAAAAGACTCATACTAATTAACAAAGCTAGCCAAGCCAACGTCCTCCTTCATCATCAAGTTTTGGGTGAGTGTGAAATGGAATTATTTTCAAATAACTACTATATTTAATTGTCACATAATTTGAAGTATAGTTCTAAATTATTTTATATTTTTTAAAAAAATTTATGAAAGTCACATTAAAATATTAAGTAATTTCTAATTTTTTTCCTTTTTTTTTCCTTTTGCAGGTATGCTTCCAACTGAGCAAAATTCAAAGAGACTTCATAACCTGCACTAGCTTTCTTCTTCTTCTTCTCTCTCTCTTTTGTTTTGTTTTTTTTTGTAACTTTTTCTTTTCTGGGTGTTGTTATTTCTGTGATGAAAAAAATGAGATATTGTCCAAAAATCAATGTTTATTCTCTGTTGCTGTAA

mRNA sequence

TTTGCCTCTATATAAAACGCCCTCTTCCCTTCTTTACCTATTCCATCGCCATTCTTCTTCTTCTTCTTTAACCAGCCATTTCTTTTACCTCCTTAACATTTTTTTCCCCTTTAAGAGAGAGAAAGAGAAGATGAGCAGACCGGGAGACTGGAACTGCAGGTCGTGCCAGCATCTGAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGCGACCCGAAATCCGACTTCGGCGGTCTGTTGAACGGCGGTGGAAGAGGCGGTTCTGGATTCGGGTACGGCGGCTCCGATGTCAGGCCCGGAGACTGGTACTGCAGCATCGGTAACTGTGGAGCCCACAATTTCGCAAGCCGGTCCAGCTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCTGCAGCAGGAGCCTTCGATTTCGACATGTCGCGCTCTAGAGGAATTTCCCCTTTTGCTTTTCCCAGTCCCGCCCGTACTGCTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGTGCCAGGTCGGGATGCAATGAACATAACTTTGCTAGCAGAATGGAATGCTTTCGATGCAGCGCTCCAAAAGACTCATACTAATTAACAAAGCTAGCCAAGCCAACGTCCTCCTTCATCATCAAGTTTTGGGTATGCTTCCAACTGAGCAAAATTCAAAGAGACTTCATAACCTGCACTAGCTTTCTTCTTCTTCTTCTCTCTCTCTTTTGTTTTGTTTTTTTTTGTAACTTTTTCTTTTCTGGGTGTTGTTATTTCTGTGATGAAAAAAATGAGATATTGTCCAAAAATCAATGTTTATTCTCTGTTGCTGTAA

Coding sequence (CDS)

ATGAGCAGACCGGGAGACTGGAACTGCAGGTCGTGCCAGCATCTGAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGCGACCCGAAATCCGACTTCGGCGGTCTGTTGAACGGCGGTGGAAGAGGCGGTTCTGGATTCGGGTACGGCGGCTCCGATGTCAGGCCCGGAGACTGGTACTGCAGCATCGGTAACTGTGGAGCCCACAATTTCGCAAGCCGGTCCAGCTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCTGCAGCAGGAGCCTTCGATTTCGACATGTCGCGCTCTAGAGGAATTTCCCCTTTTGCTTTTCCCAGTCCCGCCCGTACTGCTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGTGCCAGGTCGGGATGCAATGAACATAACTTTGCTAGCAGAATGGAATGCTTTCGATGCAGCGCTCCAAAAGACTCATACTAA

Protein sequence

MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSDFGGLLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSPARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

Homology

[Close]

BLAST of Tan0013296 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-08
Identity = 43/150 (28.67%), Postives = 55/150 (36.67%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDPKSDFGGLLNGGGRGGSGFGYGGSDVRPGDWYCS 62
           RPGDWNC  C   NFQRR  C RC  P         G       F YG           S
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGN----------S 402

Query: 63  IGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSPARTAAS--AW 122
            GN  +H  A+               +       D+    G +       +R+      +
Sbjct: 403 YGNGSSHFIANYGGSVH--------HSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPF 462

Query: 123 KSGDWICARSGCNEHNFASRMECFRCSAPK 151
           ++GDW C   GC  HNFA  + C RC A +
Sbjct: 463 RAGDWKCGSEGCGYHNFAKNVCCLRCGASR 474

[Close]

BLAST of Tan0013296 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-06
Identity = 32/68 (47.06%), Postives = 35/68 (51.47%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDPKSDFGGLLNGGGRGGSGFGYGGSDVRPGDWYCS 62
           R GDW C SC + NF  R+ C RC  PK D  G   GGG GG G G GG     G+   S
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGS 334

Query: 63  IGNCGAHN 71
            G  G HN
Sbjct: 335 -GGGGYHN 341

[Close]

BLAST of Tan0013296 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 7.7e-05
Identity = 30/97 (30.93%), Postives = 43/97 (44.33%), Query Frame = 0


Query: 54  VRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSPA 113
           V  GDW C    CG  NFA R+SC +CG  K   +    A   ++ ++           A
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTL----------A 67

Query: 114 RTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPK 151
             +   + + DW C    C+  N+A R EC  C+ PK
Sbjct: 68  EKSRGLFSANDWQC--KTCSNVNWARRSECNMCNTPK 92

[Close]

BLAST of Tan0013296 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 7.7e-05
Identity = 30/97 (30.93%), Postives = 43/97 (44.33%), Query Frame = 0


Query: 54  VRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSPA 113
           V  GDW C    CG  NFA R+SC +CG  K   +    A   ++ ++           A
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTL----------A 67

Query: 114 RTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPK 151
             +   + + DW C    C+  N+A R EC  C+ PK
Sbjct: 68  EKSRGLFSANDWQC--KTCSNVNWARRSECNMCNTPK 92

[Close]

BLAST of Tan0013296 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.7e-05
Identity = 30/97 (30.93%), Postives = 43/97 (44.33%), Query Frame = 0


Query: 54  VRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSPA 113
           V  GDW C    CG  NFA R+SC +CG  K   +    A   ++ ++           A
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTL----------A 67

Query: 114 RTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPK 151
             +   + + DW C    C+  N+A R EC  C+ PK
Sbjct: 68  EKSRGLFSANDWQC--KTCSNVNWARRSECNMCNTPK 92

[Close]

BLAST of Tan0013296 vs. NCBI nr
Match: XP_022948549.1 (periodic tryptophan protein 2 isoform X2 [Cucurbita moschata] >XP_022948550.1 periodic tryptophan protein 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 305.1 bits (780), Expect = 3.5e-79
Identity = 145/162 (89.51%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS-----DFGGLLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS     DFG LLNGGGRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAG FDFDM RSRG+SPF F +P   
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 300

Query: 121 -ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
            ART ASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 301 AARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Tan0013296 vs. NCBI nr
Match: XP_022948551.1 (TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata])

HSP 1 Score: 305.1 bits (780), Expect = 3.5e-79
Identity = 145/162 (89.51%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS-----DFGGLLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS     DFG LLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAG FDFDM RSRG+SPF F +P   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 -ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
            ART ASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Tan0013296 vs. NCBI nr
Match: XP_023525213.1 (transcription initiation factor TFIID subunit 15b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.7 bits (779), Expect = 4.6e-79
Identity = 145/163 (88.96%), Postives = 147/163 (90.18%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS-----DFGGLLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS     DFG LLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAG FDFDM RSRG+SPF F +P   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 --ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
             ART ASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 163

[Close]

BLAST of Tan0013296 vs. NCBI nr
Match: KAG7036500.1 (hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 304.7 bits (779), Expect = 4.6e-79
Identity = 145/163 (88.96%), Postives = 147/163 (90.18%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS-----DFGGLLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS     DFG LLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAG FDFDM RSRG+SPF F +P   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 --ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
             ART ASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 163

[Close]

BLAST of Tan0013296 vs. NCBI nr
Match: XP_022998918.1 (TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima])

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-78
Identity = 144/162 (88.89%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS-----DFGGLLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS     DFG LLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAG FDFDM RSRG+SPF F +P   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 -ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
            ART  SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AARTGTSAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Tan0013296 vs. ExPASy TrEMBL
Match: A0A6J1GA82 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.7e-79
Identity = 145/162 (89.51%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS-----DFGGLLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS     DFG LLNGGGRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAG FDFDM RSRG+SPF F +P   
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 300

Query: 121 -ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
            ART ASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 301 AARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Tan0013296 vs. ExPASy TrEMBL
Match: A0A6J1G9I4 (TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.7e-79
Identity = 145/162 (89.51%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS-----DFGGLLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS     DFG LLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAG FDFDM RSRG+SPF F +P   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 -ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
            ART ASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Tan0013296 vs. ExPASy TrEMBL
Match: A0A6J1K9C2 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 4.9e-79
Identity = 144/162 (88.89%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS-----DFGGLLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS     DFG LLNGGGRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAG FDFDM RSRG+SPF F +P   
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 300

Query: 121 -ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
            ART  SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 301 AARTGTSAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Tan0013296 vs. ExPASy TrEMBL
Match: A0A6J1KI51 (TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 4.9e-79
Identity = 144/162 (88.89%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS-----DFGGLLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKS     DFG LLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAG FDFDM RSRG+SPF F +P   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 -ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
            ART  SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AARTGTSAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Tan0013296 vs. ExPASy TrEMBL
Match: A0A0A0KTI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.8e-72
Identity = 137/155 (88.39%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSDFGGLLNGGGRGGSGFGYGGSDVRPGDWY 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKS  GG   G GRGGSGFGYGGSDVRPGDWY
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKS--GG---GIGRGGSGFGYGGSDVRPGDWY 60

Query: 61  CSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSR--SRGISPFAFPSPARTAAS 120
           CS+GNCGAHNFASRSSCFKCGAFKDDMS    AFDFD+ R   RGISPFAFPSPARTAAS
Sbjct: 61  CSVGNCGAHNFASRSSCFKCGAFKDDMS----AFDFDIPRRSPRGISPFAFPSPARTAAS 120

Query: 121 AWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 154
           AWKSGDWICARSGCNEHNFASRMECFRCSAP+DSY
Sbjct: 121 AWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY 146

[Close]

BLAST of Tan0013296 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 5.4e-54
Identity = 104/165 (63.03%), Postives = 115/165 (69.70%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSDFGGL-----LNGGGRGGSGFGY-GGSDV 60
           MSRPGDWNCRSC HLNFQRRD CQRCGD +S  GG+      N GGR  S FG+  GSDV
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query: 61  RPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGA--------FDFDMSRSRGISP 120
           RPGDWYC++GNCG HNFASRS+CFKCG FKD+  A  G         FD D+ RSR    
Sbjct: 61  RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSR---- 120

Query: 121 FAFPSPARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD 152
                P     S+WKSGDWIC R GCNEHNFASRMECFRC+AP+D
Sbjct: 121 ----VPGNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157

[Close]

BLAST of Tan0013296 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 4.4e-48
Identity = 100/165 (60.61%), Postives = 115/165 (69.70%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSDFGG----LLNG-GGRG-GSGFGYG-GSD 60
           M+RPGDWNCR C HLNFQRRD CQRC +P+   GG    LL+G GGR   S FG+  G D
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRP--GGISTDLLSGFGGRPVSSSFGFNTGPD 60

Query: 61  VRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMS-----AAAGAFDFDMSRSRGISPFA 120
           VRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S     A  G  D ++   RG+  F 
Sbjct: 61  VRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFG 120

Query: 121 FPSP--ARTAASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD 152
             S     T  S WKSGDWIC RSGCNEHNFASR ECFRC+APK+
Sbjct: 121 GSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of Tan0013296 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-30
Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 5   GDWNCRSCQHLNFQRRDMCQRCGDPKSDFGGLLNGGGRGGSGFGYGGSDVRPGDWYCSIG 64
           GDW C +CQH NF++R+ CQ+CG PK  FGG+        S + Y  ++V  GDWYC   
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK--FGGV------DVSTYLYNRTEVMAGDWYCGAL 65

Query: 65  NCGAHNFASRSSCFKCGAFKDDMSAAAGAFDFDMSRSRGISPFAFPSPARTAASAWKSGD 124
           NCG+HN+ASR+SC++CG  K + +           +  G    A+ +        WK+GD
Sbjct: 66  NCGSHNYASRTSCYRCGMIKVEYT----------EQYYGAQMVAYGNDGAACPPGWKTGD 125

Query: 125 WICARSGCNEHNFASRMECFRCSAPKD 152
           W+C R GC  HN+ASR ECF+C   +D
Sbjct: 126 WVCPRVGCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Tan0013296 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09
Identity = 56/216 (25.93%), Postives = 80/216 (37.04%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGD------------PKSDFGGLLNGGGRGGSGFG 60
           + R GDW C  C + N+  R+ C++CG             P +     L+   RG     
Sbjct: 46  LPRIGDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHD 105

Query: 61  YGGS---------------DVRPGDWYCSIGNCGAHNFASRSSCFKCGAF------KDDM 120
             GS               + R GDW C    CG HN++SR  C KC            +
Sbjct: 106 QPGSLLAFSNATNQASVHKEWRSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGTKRL 165

Query: 121 SAAAGAFDFDMSRSR-----------------GIS-----------PF----AFPSPART 152
           ++ A A ++D  R                   G+S           PF    + P+    
Sbjct: 166 ASEALAHEWDSKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGM 225

[Close]

BLAST of Tan0013296 vs. TAIR 10
Match: AT5G58470.1 (TBP-associated factor 15B )

HSP 1 Score: 43.5 bits (101), Expect = 1.8e-04
Identity = 30/62 (48.39%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 34  GGLLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGA 93
           GG   GG RGG G G GG D   GDW C   +CG  NFA R  C KCGA       ++GA
Sbjct: 66  GGGYQGGDRGGRGSGGGGRD---GDWRCPNPSCGNVNFARRVECNKCGALAPS-GTSSGA 123

Query: 94  FD 96
            D
Sbjct: 126 ND 123

The following BLAST results are available for this feature:

BLAST of Tan0013296 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	7.5e-08	28.67	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	3.1e-06	47.06	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
O95218	7.7e-05	30.93	Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z...	[more]
Q9R020	7.7e-05	30.93	Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=...	[more]
Q19QU3	7.7e-05	30.93	Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRA...	[more]

BLAST of Tan0013296 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948549.1	3.5e-79	89.51	periodic tryptophan protein 2 isoform X2 [Cucurbita moschata] >XP_022948550.1 pe...	[more]
XP_022948551.1	3.5e-79	89.51	TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata]	[more]
XP_023525213.1	4.6e-79	88.96	transcription initiation factor TFIID subunit 15b-like [Cucurbita pepo subsp. pe...	[more]
KAG7036500.1	4.6e-79	88.96	hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022998918.1	1.0e-78	88.89	TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima]	[more]

BLAST of Tan0013296 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA82	1.7e-79	89.51	periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G9I4	1.7e-79	89.51	TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita moschata OX=36...	[more]
A0A6J1K9C2	4.9e-79	88.89	periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1KI51	4.9e-79	88.89	TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita maxima OX=3661...	[more]
A0A0A0KTI0	5.8e-72	88.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1	[more]

BLAST of Tan0013296 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	5.4e-54	63.03	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	4.4e-48	60.61	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	7.1e-30	41.50	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	1.4e-09	25.93	zinc finger (Ran-binding) family protein	[more]
AT5G58470.1	1.8e-04	48.39	TBP-associated factor 15B	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 129..155 e-value: 2.1E-5 score: 34.0 coord: 11..35 e-value: 9.1E-5 score: 31.8 coord: 63..89 e-value: 9.5E-5 score: 31.8
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 127..156 e-value: 1.2E-10 score: 40.5 coord: 61..88 e-value: 1.3E-5 score: 24.4 coord: 9..37 e-value: 0.0015 score: 17.8
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 13..32
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 131..152
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 65..86
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 127..158 score: 10.545425
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 61..92 score: 9.890478
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 9..38 score: 9.845309
None	No IPR available	GENE3D	4.10.1060.10		coord: 119..158 e-value: 5.5E-13 score: 49.9 coord: 57..92 e-value: 2.8E-12 score: 47.7 coord: 1..38 e-value: 1.4E-10 score: 42.2
None	No IPR available	PANTHER	PTHR23111:SF74	OS02G0203700 PROTEIN	coord: 4..158
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 4..158
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 4..37
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 53..92
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 123..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013296.1	Tan0013296.1	mRNA
Tan0013296.2	Tan0013296.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding