Tan0013280 (gene) Snake gourd v1

Overview


Name	Tan0013280
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Dynein light chain
Location	LG01: 109951843 .. 109952894 (-)
RNA-Seq Expression	Tan0013280
Synteny	Tan0013280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAATTGGCATGATTCTGCGAAGATCCGTTGGTGACCACAGAGAGAGGATCTGGTCTTGGGTGACCCACGAGCCTAGCACCAGCCAAAGTTTATCCTATAAGCTCTATATAATTAAATCTCTGCTCCCTCCCTCCGCCGCCAGCTCCGCCGTGTGGTGATATATTAGAGACTGTGGCAACCATGTTGGAAGGCAAAGCAATCGTCGGAGAGACGGATATGCTGCAGGCCATGCAGCAGGACGCTCTGGACCTTGCGGCTAAGGCTCTTGACAGTTTTGATGTCACTGAAGCCACTGACATTGCTCGGTTCATTAAGAAGGTAAAATTCTATTTTTTTTTTTCTTAGTTTATTGAGAATTATAAAAAAAAAAAAAAGTGCAAACAAAGAAATTGTTAGCCAACAATCCGGTTTTAGTTTTTATGGATATAAACAAAATGGCGGAAAAGTAATTTTCAAAAATTTGTTTTTGTGTAAATTTACTAGTTTCAACCTATTAGCTTAAGATTTTGGATAAATTCAAATAAACAAAACGAAAGTAAATCAAACTAATTAAAATATATATGTTGGATCATTAAAAGTCACTAAAATGACTGATTTAGGGTATAAAAATGGGCAGGAATTTGACAGGATATATGGGCCAGGATGGCAATGCATAGTGGGAACAGATTTTGGGTCATTTGTGACTCATTGTTTTGGATGTTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTGTTTAGGGGCTCTGCTGGCCCAGAAGAAGATCAAGAACCTGACTCAACTCAATTTGCTGATTTGGAAACTCTCAAACCATGATCAAATCAAAATTCATCTCAACCAACCATACTTCTTCCTTTCTTTTTGTTTCTGCAAATTAATATATAAATCTCTCTCTCTCTCTCTCTTTTTTTTTTTTAATTTTCTGTTTCAGTAAAGTGATTATAGTTGAAGAAGGAAACTTATATTTTTTTACTGCTTTGTTTACCTTTTTCTTTCTTCACAAAAAGCTAAGTCTCTTTTTTGGTGAGACATTTGGATATATGGG

mRNA sequence

AAGGAATTGGCATGATTCTGCGAAGATCCGTTGGTGACCACAGAGAGAGGATCTGGTCTTGGGTGACCCACGAGCCTAGCACCAGCCAAAGTTTATCCTATAAGCTCTATATAATTAAATCTCTGCTCCCTCCCTCCGCCGCCAGCTCCGCCGTGTGGTGATATATTAGAGACTGTGGCAACCATGTTGGAAGGCAAAGCAATCGTCGGAGAGACGGATATGCTGCAGGCCATGCAGCAGGACGCTCTGGACCTTGCGGCTAAGGCTCTTGACAGTTTTGATGTCACTGAAGCCACTGACATTGCTCGGTTCATTAAGAAGGAATTTGACAGGATATATGGGCCAGGATGGCAATGCATAGTGGGAACAGATTTTGGGTCATTTGTGACTCATTGTTTTGGATGTTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTGTTTAGGGGCTCTGCTGGCCCAGAAGAAGATCAAGAACCTGACTCAACTCAATTTGCTGATTTGGAAACTCTCAAACCATGATCAAATCAAAATTCATCTCAACCAACCATACTTCTTCCTTTCTTTTTGTTTCTGCAAATTAATATATAAATCTCTCTCTCTCTCTCTCTTTTTTTTTTTTAATTTTCTGTTTCAGTAAAGTGATTATAGTTGAAGAAGGAAACTTATATTTTTTTACTGCTTTGTTTACCTTTTTCTTTCTTCACAAAAAGCTAAGTCTCTTTTTTGGTGAGACATTTGGATATATGGG

Coding sequence (CDS)

ATGTTGGAAGGCAAAGCAATCGTCGGAGAGACGGATATGCTGCAGGCCATGCAGCAGGACGCTCTGGACCTTGCGGCTAAGGCTCTTGACAGTTTTGATGTCACTGAAGCCACTGACATTGCTCGGTTCATTAAGAAGGAATTTGACAGGATATATGGGCCAGGATGGCAATGCATAGTGGGAACAGATTTTGGGTCATTTGTGACTCATTGTTTTGGATGTTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTGTTTAGGGGCTCTGCTGGCCCAGAAGAAGATCAAGAACCTGACTCAACTCAATTTGCTGATTTGGAAACTCTCAAACCATGA

Protein sequence

MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQEPDSTQFADLETLKP

Homology

[Close]

BLAST of Tan0013280 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.9e-19
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M E KA++   DM + MQQDA+D A +AL+ F++ +  DIA +IKKEFD+ Y P W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of Tan0013280 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.9e-19
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M + KA++   DM + MQQDA+D A +AL+ +++ +  DIA FIKKEFD+ Y P W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of Tan0013280 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M++ KA++   DM   MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y P W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Tan0013280 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M + KA++   DM + MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y P W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of Tan0013280 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M + KA++   DM + MQQDA+D A +A++ +++ +  DIA +IKKEFD+ Y P W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Tan0013280 vs. NCBI nr
Match: XP_038899068.1 (dynein light chain 2, cytoplasmic [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 2.8e-49
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAI+GETDMLQAMQQDAL+LAAKALDSFDVTEATDIARFIKKEFD+IYG GWQCIV
Sbjct: 1   MLEGKAIIGETDMLQAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDKIYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQEPDSTQFADLETLK 113
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA  EE+Q+P  TQF+ +ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQQPQPTQFSVMETLK 112

[Close]

BLAST of Tan0013280 vs. NCBI nr
Match: XP_022139644.1 (dynein light chain LC6, flagellar outer arm [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 97/112 (86.61%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAI+GETDMLQ MQQDALDLAAKALDSFDVTEATDIARFIKKEFDRI+GPGWQCIV
Sbjct: 1   MLEGKAIIGETDMLQGMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIHGPGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQEPDSTQFADLETLK 113
           GTDFGSFVTHCFGCFIYFCVG+LA+LLFRGSAGP++ +  D  QFA LE LK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGNLAVLLFRGSAGPQQTEPTD--QFAALEALK 110

[Close]

BLAST of Tan0013280 vs. NCBI nr
Match: XP_022941140.1 (dynein light chain 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45
Identity = 97/112 (86.61%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAIVGETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQEPDSTQFADLETLK 113
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS  P+  Q P  T FA  ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQ--QHPHPTHFAASETLK 110

[Close]

BLAST of Tan0013280 vs. NCBI nr
Match: XP_008454627.1 (PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA0036763.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa] >TYJ95832.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45
Identity = 93/116 (80.17%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAI+GETDML+AMQQDAL+LA+KALDSFDVTEATDIARFIKKEFDR YG GWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQ---EPDSTQFADLETLKP 114
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSA  +E Q   +P +  F+ ++TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP 116

[Close]

BLAST of Tan0013280 vs. NCBI nr
Match: XP_031266800.1 (dynein light chain 2, cytoplasmic [Pistacia vera])

HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45
Identity = 93/112 (83.04%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKA++GETDML++MQQDALDLAAKALD FDVTEAT+IARFIKKEFDR YG GWQCIV
Sbjct: 1   MLEGKAVIGETDMLESMQQDALDLAAKALDFFDVTEATEIARFIKKEFDRTYGAGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQEPDSTQFADLETLK 113
           GTDFGSFVTHCFGCFIYF VGSLAILLFRGSA  +E  EP + QFA LET+K
Sbjct: 61  GTDFGSFVTHCFGCFIYFQVGSLAILLFRGSAAGQETDEPAANQFATLETVK 112

[Close]

BLAST of Tan0013280 vs. ExPASy TrEMBL
Match: A0A6J1CDL8 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111010496 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 97/112 (86.61%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAI+GETDMLQ MQQDALDLAAKALDSFDVTEATDIARFIKKEFDRI+GPGWQCIV
Sbjct: 1   MLEGKAIIGETDMLQGMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIHGPGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQEPDSTQFADLETLK 113
           GTDFGSFVTHCFGCFIYFCVG+LA+LLFRGSAGP++ +  D  QFA LE LK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGNLAVLLFRGSAGPQQTEPTD--QFAALEALK 110

[Close]

BLAST of Tan0013280 vs. ExPASy TrEMBL
Match: A0A5A7T1H5 (Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001190 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 93/116 (80.17%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAI+GETDML+AMQQDAL+LA+KALDSFDVTEATDIARFIKKEFDR YG GWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQ---EPDSTQFADLETLKP 114
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSA  +E Q   +P +  F+ ++TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP 116

[Close]

BLAST of Tan0013280 vs. ExPASy TrEMBL
Match: A0A6J1FSQ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 97/112 (86.61%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAIVGETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQEPDSTQFADLETLK 113
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS  P+  Q P  T FA  ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQ--QHPHPTHFAASETLK 110

[Close]

BLAST of Tan0013280 vs. ExPASy TrEMBL
Match: A0A1S3BZU7 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 93/116 (80.17%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAI+GETDML+AMQQDAL+LA+KALDSFDVTEATDIARFIKKEFDR YG GWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQ---EPDSTQFADLETLKP 114
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSA  +E Q   +P +  F+ ++TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP 116

[Close]

BLAST of Tan0013280 vs. ExPASy TrEMBL
Match: A0A6J1J2G7 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.6e-45
Identity = 96/112 (85.71%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAIVGETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQEPDSTQFADLETLK 113
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS  P+  Q P  T  A  ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQ--QHPHPTHLAASETLK 110

[Close]

BLAST of Tan0013280 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-37
Identity = 75/101 (74.26%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKA++G+TDM Q M++DAL LA+KALD FDVTE T IARFIKKEFDR YG GWQCIV
Sbjct: 1   MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEEDQEPD 102
           GT FGSFVTHC GCFI+F VGSL ILLF+GS G  E   PD
Sbjct: 61  GTHFGSFVTHCSGCFIHFSVGSLTILLFKGSVG--EPAPPD 99

[Close]

BLAST of Tan0013280 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-23
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          MLEGKA V ETDM   MQ  A+ +A+++LD FDV ++  IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of Tan0013280 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-22
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          MLEGKA+V ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGP 95
          G++FG F TH  G FIYF + +L  L+F+G++ P
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGASTP 94

[Close]

BLAST of Tan0013280 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-16
Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 12  DMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIVGTDFGSFVTHC 71
           DM   MQ  A   A   LDS +   +  +A  +KKEFD+ YGP W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  FGCFIYFCVGSLAILLFRGSAGP 95
            GCFIYF +  L +LLF+    P
Sbjct: 183 TGCFIYFSMDKLYVLLFKTKVRP 205

[Close]

BLAST of Tan0013280 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 5   KAIVGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIYGPGWQCIVGTDF 64
           +A++   DM   MQ++A+++A  A + + V +  DIA  IKKEFD+ +G  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCFGCFIYFCVGSLAILLFR 90
           GS+VTH    F+YF +   A+LLF+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

The following BLAST results are available for this feature:

BLAST of Tan0013280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	6.9e-19	52.81	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	6.9e-19	52.81	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	1.2e-18	51.69	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	1.5e-18	51.69	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
Q3MHR3	3.4e-18	50.56	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]

BLAST of Tan0013280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899068.1	2.8e-49	88.39	dynein light chain 2, cytoplasmic [Benincasa hispida]	[more]
XP_022139644.1	1.5e-47	86.61	dynein light chain LC6, flagellar outer arm [Momordica charantia]	[more]
XP_022941140.1	3.2e-45	86.61	dynein light chain 2, cytoplasmic-like [Cucurbita moschata]	[more]
XP_008454627.1	3.2e-45	80.17	PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA003676...	[more]
XP_031266800.1	3.2e-45	83.04	dynein light chain 2, cytoplasmic [Pistacia vera]	[more]

BLAST of Tan0013280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDL8	7.4e-48	86.61	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111010496 PE=3 SV=1	[more]
A0A5A7T1H5	1.5e-45	80.17	Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G0...	[more]
A0A6J1FSQ1	1.5e-45	86.61	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1	[more]
A0A1S3BZU7	1.5e-45	80.17	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1	[more]
A0A6J1J2G7	7.6e-45	85.71	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1	[more]

BLAST of Tan0013280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27360.1	2.6e-37	74.26	Dynein light chain type 1 family protein	[more]
AT3G16120.1	1.6e-23	57.14	Dynein light chain type 1 family protein	[more]
AT1G52240.2	1.8e-22	53.19	RHO guanyl-nucleotide exchange factor 11	[more]
AT5G20110.1	3.3e-16	49.40	Dynein light chain type 1 family protein	[more]
AT4G15930.1	1.4e-14	43.53	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 2.0E-45 score: 166.9
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 6..89 e-value: 1.3E-32 score: 112.1
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..97
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.7E-31 score: 110.1
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..113
None	No IPR available	PANTHER	PTHR11886:SF70	DYNEIN LIGHT CHAIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013280.1	Tan0013280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding