Tan0013266 (gene) Snake gourd v1

Overview
NameTan0013266
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA-directed RNA polymerase subunit beta
LocationLG07: 11166830 .. 11172592 (-)
RNA-Seq ExpressionTan0013266
SyntenyTan0013266
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACGTTTCGTTTAGTTGCTGATTTGTAATTTCCTGCTCTTGCTTAATTGAAACCTGCAAAATTTTGAGAAGTTTCTTTTCCAGTTAACATTACTTCTTTTTCTTTTCTGTTGTCTTTTAAACCTTTCATAGCTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTGGTTTTTGCTGAAACCTCAGTGGATATGATTTGTTGAGAGACCCACGCCACAACAAGGGGCTTGCGTTTACTGAGAAAGAAAGAGATGCTCACTACTTGCGTGGTCTTCTACCCCCGACAATCGTTGCTCAAAATCTTCAGGGGTTACCTTTCACTTGAAATACTATGCCCATTATATGTTTTACTATCCTAGTTTTTTTTTATTATGAAAACTATTTGGAACTACTTTCCAGGTAAAGAAGATGTTGCACAATATTCGTCAATATCAAGTGCCATTACAGAAGTACATGGCAATGATGGATCTTCAGGTAGTCATTGTTGATCTCATTTTTTAGTACCTACTAGGACTTTGAAATGATTCTTTATTTAATTTTTGTATTTGATGATCTTGAATACAAAATTGTGAACCTCGTCGAAGCCGCTGTTGTGTTTTACATGGAAAAGATGAGGCTGAACTCGCAAAACTTGGTTTGTGGCAAAAACTTAGAATTAAACTATTATATGTTGCTTCTTTTCTCACAATCTTTTTGATGGGAGGGATAGTCATTAACATTGTCTATCTTTTTAGGCGAGTGCCCACTTGATCCTCGAGGCTATTTTGTAATCAAGGGCACCGAGAAGGTAATGCTTTAACTATTTTTGGTATTGTTTAAAAAGTAGTAAACTAGATGTCCTTGAGGCTGATTTTCAAGTTTTTTTAACGATGGTCTTGAATATTATCATTTATGAGTTTTCTAATTCCTAAAGTTACAAGGTCAAACTATTGTCTTTTGGGGTTTTTCAAAAATTAGATTAGCACTCTTGGTCTAGACTCTGCCATTGCTTCCGAAATTTTGGTTTTTAATATCTATAGGCAGTTTCTAAAATTAGATGACACAAAATGTATTAAAATGAGGACTTATTATAAATATGATCTCCAAAAAGAAACTTGGAAGAATAGAAAAATTGTCATTTGTTGATTGTGTTACCAAATTTTCTTTGATTTGATCATTTTGCACTTCACAAAGTAATATTCATCATTCCTGTTTTGTTTTATATTTATTTCTTAAAATTGCACATAGCTAACACTGTAAAACTCTCCTATCCATGTCAGGTAGTTTTGATTCAAGAACAACTCTCAAAGAACAGGATTATTATTGATACTGACAAAAAGGGAAAGTGAGTACCCTTTCAAGTATCTTGTTTCAATGTTCTAGTTTGTCTCCTTATTCTCATGATCATTGTTCTCTTGATAAAGGGCTTCTGTGGAAGTTATACAAGGATCACTGTTTCTCTTCTATATCATTATGTCTACCAGATTCCTAGTTTTATTCTGTTTACATAGGATTAGAAATTGTTTCTAATGGGCATTGTTTGTACTTGTACTGGATTGTGGATCCATATGCTTTTGAACGCCTTTGTGGTTGGTACATGTTTGTTTTTATAACGAATCTCATGGTGACGTGAGTAAATTGTTCAACTAGAGCACACACATTGAAGGATGCAAGGTAATGAGGAGAAAATCTCCAACAATTATGATTCAAAAAGTAAGCTAATCACTAGAGATTAACCTTCTATTTATTGAAGATTAATGGGTTTACCAACAACCTGCTAACTAGGTAAATAACTAGCTACAAACTAAAGCAACAACCATTCAAATAAAAATCACAAAACAATTACTAATTATGCTACACCATTATATTACTGTCGTTCATTCTATGATCCCTGTTTTGAAATACTTGTTTTTTCCCTCTTATATGTTGGTTGAAAGTTCATATTTGTGTATCTTCGACCTGAATTGTCCTTGTTGCTTCCCAGTATAAAGCAATGTAGCATTTAAGAGAATGATGCCCAGGAAATCTCATAGTTTTTCTATTATTTACAAAGTCTTTGGCGTTATTCGATCCCCTTCATGAACAAAATGATCAACAAAACCCAAACATAACTCTTCTATGGTTTTTGAGCCTATCTGAGAAGCTTCCTCCTTGAAATAATTATCAAAAATCAACAAAGACGCTACTTGGAGATGGTTTATATTTTTTCTTTTATGGACAATCATTAACTGCAACTAACATAATATTGATGAAATGTATATGCATATATAACACACTCATTTTTTAGACTATTATGTTGTAGCATTGTGGATATTGATATAATTTTTATTGCAGCTTTTCTATTGATTGTGTAGTTATGAATCCATTTTATGCGTTTCTTCCAGTTATTCTTGGTTTAATCATTTCATGTGGTTTTACTTTAATTATAGTTTATTGATATTGATAACACAAGTTGAAGGAAATGTTGCCGTCTATGGGGTGTTTTTGAAAAGATTGATGAATAGTTGAGAAACTTAGGGAATTAGTTTGTATTGATAAATGAACTTCAACACTACCTTAATTAAGTCATAAAACATCACCTTTAGTATGAATAGAAGTTTAATATGGGTATTTACGCTCATGTTAATATTCAACATCTAGATATTAACATTTTAAGAAGTACTATGGAAATATTTTTGCAGAATATGGGAAGCTTAATTCTCATCCTAAAAATATAAACTCAGTTTATATGAATCAAACTTTGCAGTGTTTTGTGAGTTAGAATTGAAAGTCGTGGTCGGTTAATCTGGATATAGAAGTGTTATCTTTTTTTACCAACAGGTGCTAAGTAAAATTTTTGGTTTTGTTATAGGTTACGTCGTTATGTTGTCGAAATTTTTGAAACATATAGGTTGTTAGCTTAGAGGTGTTCCTTGGATTAGGTTAACATTTGGGGGAGTTAGCTTAGTGTTATTGGTAGTACAGTTGCATGGCCTTTTGACAAAATTCTGTAGGCCCCATAGGTAGTTTTACGTTAGTGAGTTATTTTAGGCTTCAAAGTATGCTTAACAGTCTTTAAGACACTTTTGAAGATTCGAGGGGTCGGTTGTGTGCATAAGTTTCAGTTTAGGCATTTTTTTAGTTTCTTTTAATGAGACTTAAACTCTTGTTATACTCTTTTTTTGTAACTTTGTAGGTTCCATAGCTAGTTTTATATCGTTAGTGAGTTATTATAGACCTCAAAGTATGCTTAAGAACCTTGACACTTTTGAAGATTTGAGGGGTCAGTTGTGTGCATAAGTTTCAGTTTAGGCACTTTTTTAGTTTCTTTGAGCGTGAAAATAAGACTTAAACTCTTTTTATACATTTTTTTTGTAATTTTATAGGTTCCATAGGTAGTTTTAGATCGTTAGTGAGTTATTTTAGGCCTCAAAGTATGCTTAAGAGCATTTAAGACACTTTTGAAGATTCGAGGGGTCGGTTGTATGCATAAGTTTCAGTTTAGGCACTCTTTTAGTTTCTTTGAGCGTGAAAATGAGACTTAAACTCTTTTTATACACTTTTTTTGTAACTTTGTAGGTTCCATAGATAGTTTTATATCGTTAGTGAGTTATTATAGACCTCAAAGTATGCTTAAGAACCTTGACACTTTTGAAGATTTGAGGGGTCAGTTGTGTGCATAAGTTTCAGTTTAGGCACTTTTTTAGTTTCTTTGAGCGTGAAAATAAGACTTAAACTCTTTTTATATATTTTTTTTGTAATTTTATAGGTTCCATAGGTAGTTTTAGATCGTTAGTGAGTTATTTTAGGCCTCAAAGTATGCTTAAGAGCATTTAAGACACTTTTGAAGATTCGAGGGGTCGGTTGTATGCATAAGTTTCAGTTTAGGCACTCTTTTAGTTTCTTTGAGCGTGAAAATGAGACTTAAACTCTTTTTATACACTTTTTTTGTAACTTTGTAGGTTCCATAGGTAGTTTTAGATCGTTAGTGAGTTATTTTAGGCCTCAAAGTATACTTAAGAGCCTTTAAGACACTTTTGAAGATGAATTTCAACTCCATTGTAAATGCTCTTTTGACATTGATTTCTGTGTCTTTTCTTCTCTACAACTCCCTCTTAAGTCTCTCACTCTTCTTTGTTTTCCCAAATTAGACTTGCGTTTTCGCTTTGTTTGTGTTTTTGTTTTTGTATAATGAAGGGGATCAAAGATGGGTGTGTGATCGCTTTCACCCTGAAAAATTTGTGTTTATTGGGGGTTTCTGTTGTTGCTTCTTTGATCCAGTTGCAAGATGAAGAAATATTGGTTCATTTGTGAATCTTCCATGATTTTGTGAGTTAGAGTTGAAAGTCGTGGTTGGTTAATCTGGATATAGAAGTGTTATCTTTTTTTACCAGCAGGTGCTAAATAAAATTTTTGGTATTGTTATAGTTACATCATTATGCTGTCAAAATTTTAGAAGCATATAGGTTGTTAGCTTAGTGGTGTTTCTTAGATTAGGTTGACATTTGGGGGAGTTAGCTTAGTGTTGTTGGTAGTACAGTTGCATGGTCTTTTGACAAAGTTTTAATCACTACGTACATTTATGTATTATTATTTAAAATTATTGATTGTTTAATAATTATTTTATTTGAGTAAATATTCTTCTTTATTTCTTTCTTGATGACTTTTTGTAGGTTGATCACAGAATATCAAGGGAAGTTCTTGGCCACAAAAACTACTACCTCGAGAGTTATATATTTTGATATTGAACAGTGAAACATTTTGTAATTTAATGAATAGTATTTGATAAATTTATATTTAGTGTCATTCCAAAATTGATGTTCATTACTATATTTATTTTGTGAACAATAAATTGTTATGTTTTGTATCAATTTAAGAGGGATAATGTAAACCTTGAATGAAATGTAATTTGCTTGGATTAAT

mRNA sequence

TACGTTTCGTTTAGTTGCTGATTTTGGATATGATTTGTTGAGAGACCCACGCCACAACAAGGGGCTTGCGTTTACTGAGAAAGAAAGAGATGCTCACTACTTGCGTGGTCTTCTACCCCCGACAATCGTTGCTCAAAATCTTCAGGGGTAAAGAAGATGTTGCACAATATTCGTCAATATCAAGTGCCATTACAGAAGTACATGGCAATGATGGATCTTCAGGCGAGTGCCCACTTGATCCTCGAGGCTATTTTGTAATCAAGGGCACCGAGAAGGTAGTTTTGATTCAAGAACAACTCTCAAAGAACAGGATTATTATTGATACTGACAAAAAGGGAAAGTTGATCACAGAATATCAAGGGAAGTTCTTGGCCACAAAAACTACTACCTCGAGAGTTATATATTTTGATATTGAACAGTGAAACATTTTGTAATTTAATGAATAGTATTTGATAAATTTATATTTAGTGTCATTCCAAAATTGATGTTCATTACTATATTTATTTTGTGAACAATAAATTGTTATGTTTTGTATCAATTTAAGAGGGATAATGTAAACCTTGAATGAAATGTAATTTGCTTGGATTAAT

Coding sequence (CDS)

ATGCTCACTACTTGCGTGGTCTTCTACCCCCGACAATCGTTGCTCAAAATCTTCAGGGGTAAAGAAGATGTTGCACAATATTCGTCAATATCAAGTGCCATTACAGAAGTACATGGCAATGATGGATCTTCAGGCGAGTGCCCACTTGATCCTCGAGGCTATTTTGTAATCAAGGGCACCGAGAAGGTAGTTTTGATTCAAGAACAACTCTCAAAGAACAGGATTATTATTGATACTGACAAAAAGGGAAAGTTGATCACAGAATATCAAGGGAAGTTCTTGGCCACAAAAACTACTACCTCGAGAGTTATATATTTTGATATTGAACAGTGA

Protein sequence

MLTTCVVFYPRQSLLKIFRGKEDVAQYSSISSAITEVHGNDGSSGECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKLITEYQGKFLATKTTTSRVIYFDIEQ
Homology
[Close]
BLAST of Tan0013266 vs. ExPASy Swiss-Prot
Match: F4KD38 (DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPC2 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-14
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 37  VHGNDGSS----GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKLITEYQGK 96
           +HG D       GECPLDP GYF+IKGTEKV+LIQEQLSKNRIIID+DKKG +       
Sbjct: 156 LHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSS 215

Query: 97  FLATKTTT 101
              TK+ T
Sbjct: 216 TEMTKSKT 223

[Close]
BLAST of Tan0013266 vs. ExPASy Swiss-Prot
Match: Q9NW08 (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-11
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 46  ECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKG 84
           ECPLDP GYF++KG EKV+LIQEQLSKNRII++ D+KG
Sbjct: 160 ECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 197

[Close]
BLAST of Tan0013266 vs. ExPASy Swiss-Prot
Match: P59470 (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-11
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 46  ECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKG 84
           ECPLDP GYF++KG EKV+LIQEQLSKNRII++ D+KG
Sbjct: 160 ECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 197

[Close]
BLAST of Tan0013266 vs. ExPASy Swiss-Prot
Match: P22276 (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RET1 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 46  ECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKLI 87
           ECPLDP GYF++ GTEKV+L+QEQLSKNRII++ D+K  ++
Sbjct: 176 ECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKGIV 216

[Close]
BLAST of Tan0013266 vs. ExPASy Swiss-Prot
Match: Q10233 (DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc2 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-10
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 46  ECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKK 83
           ECPLDP GYF++KGTEKV+L+QEQLSKNRII++ + K
Sbjct: 184 ECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEAEPK 220

[Close]
BLAST of Tan0013266 vs. NCBI nr
Match: XP_028083749.1 (DNA-directed RNA polymerase III subunit 2 isoform X5 [Camellia sinensis])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 30  ISSAITEVHGNDGSS----GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKL 89
           + S    +HG DG+     GECPLDP GYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG +
Sbjct: 5   LRSCCCVLHGKDGAELARLGECPLDPGGYFIIKGTEKVILIQEQLSKNRIIIDTDKKGCV 64

Query: 90  ITEYQGKFLATKTTT 101
                    ATK+ T
Sbjct: 65  QASVMSSTEATKSKT 79

[Close]
BLAST of Tan0013266 vs. NCBI nr
Match: XP_028083748.1 (DNA-directed RNA polymerase III subunit 2 isoform X4 [Camellia sinensis])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 30  ISSAITEVHGNDGSS----GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKL 89
           + S    +HG DG+     GECPLDP GYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG +
Sbjct: 5   LRSCCCVLHGKDGAELARLGECPLDPGGYFIIKGTEKVILIQEQLSKNRIIIDTDKKGCV 64

Query: 90  ITEYQGKFLATKTTT 101
                    ATK+ T
Sbjct: 65  QASVMSSTEATKSKT 79

[Close]
BLAST of Tan0013266 vs. NCBI nr
Match: XP_028083744.1 (DNA-directed RNA polymerase III subunit 2 isoform X2 [Camellia sinensis])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 30  ISSAITEVHGNDGSS----GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKL 89
           + S    +HG DG+     GECPLDP GYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG +
Sbjct: 5   LRSCCCVLHGKDGAELARLGECPLDPGGYFIIKGTEKVILIQEQLSKNRIIIDTDKKGCV 64

Query: 90  ITEYQGKFLATKTTT 101
                    ATK+ T
Sbjct: 65  QASVMSSTEATKSKT 79

[Close]
BLAST of Tan0013266 vs. NCBI nr
Match: XP_028083743.1 (DNA-directed RNA polymerase III subunit 2 isoform X1 [Camellia sinensis])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 30  ISSAITEVHGNDGSS----GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKL 89
           + S    +HG DG+     GECPLDP GYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG +
Sbjct: 5   LRSCCCVLHGKDGAELARLGECPLDPGGYFIIKGTEKVILIQEQLSKNRIIIDTDKKGCV 64

Query: 90  ITEYQGKFLATKTTT 101
                    ATK+ T
Sbjct: 65  QASVMSSTEATKSKT 79

[Close]
BLAST of Tan0013266 vs. NCBI nr
Match: XP_028083745.1 (DNA-directed RNA polymerase III subunit 2 isoform X3 [Camellia sinensis] >XP_028083747.1 DNA-directed RNA polymerase III subunit 2 isoform X3 [Camellia sinensis])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 30  ISSAITEVHGNDGSS----GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKL 89
           + S    +HG DG+     GECPLDP GYF+IKGTEKV+LIQEQLSKNRIIIDTDKKG +
Sbjct: 5   LRSCCCVLHGKDGAELARLGECPLDPGGYFIIKGTEKVILIQEQLSKNRIIIDTDKKGCV 64

Query: 90  ITEYQGKFLATKTTT 101
                    ATK+ T
Sbjct: 65  QASVMSSTEATKSKT 79

[Close]
BLAST of Tan0013266 vs. ExPASy TrEMBL
Match: A0A2R6Q6L8 (DNA-directed RNA polymerase subunit beta OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc21284 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 47/97 (48.45%), Postives = 60/97 (61.86%), Query Frame = 0 

Query: 9   YPRQSLLKIFRGKEDVAQYS-SISSAITEVHGNDGSS----GECPLDPRGYFVIKGTEKV 68
           +P +  L + + K  + +    + S    +HG D +     GECPLDP GYF+IKGTEKV
Sbjct: 137 FPVEKTLPVVKNKVVIGRMPIMLRSCCCILHGKDEAELSRLGECPLDPGGYFIIKGTEKV 196

Query: 69  VLIQEQLSKNRIIIDTDKKGKLITEYQGKFLATKTTT 101
           +LIQEQLSKNRIIIDTDKKG +         ATK+ T
Sbjct: 197 ILIQEQLSKNRIIIDTDKKGCIQASVTSSTEATKSKT 233

[Close]
BLAST of Tan0013266 vs. ExPASy TrEMBL
Match: A0A6J1CEJ1 (DNA-directed RNA polymerase subunit beta OS=Momordica charantia OX=3673 GN=LOC111010008 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 45/68 (66.18%), Postives = 49/68 (72.06%), Query Frame = 0 

Query: 37  VHGNDGSS----GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKLITEYQGK 96
           +HG D +     GECPLDP GYFVIKGTEKVVLIQEQLSKNRIIIDTDKKG +       
Sbjct: 165 LHGKDEAELARLGECPLDPGGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGNINASVTSS 224

Query: 97  FLATKTTT 101
             ATK+ T
Sbjct: 225 TEATKSKT 232

[Close]
BLAST of Tan0013266 vs. ExPASy TrEMBL
Match: A0A4Y7LFK8 (DNA-directed RNA polymerase subunit beta OS=Papaver somniferum OX=3469 GN=C5167_046218 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 45  GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKLITEYQGKFLATKTTTSRVI 104
           GECPLDP GYF++KGTEKV+LIQEQLSKNRIII+TDKKG L+        ATK+ T  VI
Sbjct: 160 GECPLDPGGYFIVKGTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKT--VI 219

Query: 105 YFDIEQ 111
             D E+
Sbjct: 220 LMDKEK 223

[Close]
BLAST of Tan0013266 vs. ExPASy TrEMBL
Match: A0A4Y7L339 (DNA-directed RNA polymerase subunit beta OS=Papaver somniferum OX=3469 GN=C5167_003263 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 45  GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKLITEYQGKFLATKTTTSRVI 104
           GECPLDP GYF++KGTEKV+LIQEQLSKNRIII+TDKKG L+        ATK+ T  VI
Sbjct: 160 GECPLDPGGYFIVKGTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKT--VI 219

Query: 105 YFDIEQ 111
             D E+
Sbjct: 220 LMDKEK 223

[Close]
BLAST of Tan0013266 vs. ExPASy TrEMBL
Match: A0A5D3BXU3 (DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00150 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 0 

Query: 37  VHGNDGSS----GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKLITEYQGK 96
           +HG D +     GECPLDP GYF+IKGTEKVVLIQEQLSKNRIIIDTDKKG +       
Sbjct: 89  LHGKDEAELARLGECPLDPGGYFIIKGTEKVVLIQEQLSKNRIIIDTDKKGNINASVTSS 148

Query: 97  FLATKTTT 101
             ATK+ T
Sbjct: 149 TEATKSKT 156

[Close]
BLAST of Tan0013266 vs. TAIR 10
Match: AT5G45140.1 (nuclear RNA polymerase C2 )

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-15
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 37  VHGNDGSS----GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIIIDTDKKGKLITEYQGK 96
           +HG D       GECPLDP GYF+IKGTEKV+LIQEQLSKNRIIID+DKKG +       
Sbjct: 156 LHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSS 215

Query: 97  FLATKTTT 101
              TK+ T
Sbjct: 216 TEMTKSKT 223

[Close]
BLAST of Tan0013266 vs. TAIR 10
Match: AT4G21710.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 50.8 bits (120), Expect = 7.9e-07
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 0 

Query: 12  QSLLKIFRGKEDVAQYSSISSAITEVHGNDGSSGECPLDPRGYFVIKGTEKVVLIQEQLS 71
           Q   K+F GK  +   SS  +       +    GECP D  GYF+I G+EKV++ QE++S
Sbjct: 148 QDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS 207

Query: 72  KNRIII 78
            N + +
Sbjct: 208 TNHVYV 213

[Close]
BLAST of Tan0013266 vs. TAIR 10
Match: AT3G23780.1 (nuclear RNA polymerase D2A )

HSP 1 Score: 41.2 bits (95), Expect = 6.3e-04
Identity = 21/49 (42.86%), Postives = 27/49 (55.10%), Query Frame = 0 

Query: 29  SISSAITEVHGNDGSSGECPLDPRGYFVIKGTEKVVLIQEQLSKNRIII 78
           SI    +E    +   G+C  D  GYFVIKG EKV + QEQ+   R+ I
Sbjct: 182 SILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI 230

[Close]
BLAST of Tan0013266 vs. TAIR 10
Match: AT3G23780.2 (nuclear RNA polymerase D2A )

HSP 1 Score: 41.2 bits (95), Expect = 6.3e-04
Identity = 21/49 (42.86%), Postives = 27/49 (55.10%), Query Frame = 0 

Query: 29  SISSAITEVHGNDGSSGECPLDPRGYFVIKGTEKVVLIQEQLSKNRIII 78
           SI    +E    +   G+C  D  GYFVIKG EKV + QEQ+   R+ I
Sbjct: 182 SILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI 230

[Close]
BLAST of Tan0013266 vs. TAIR 10
Match: AT3G18090.1 (nuclear RNA polymerase D2B )

HSP 1 Score: 40.8 bits (94), Expect = 8.2e-04
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 0 

Query: 45  GECPLDPRGYFVIKGTEKVVLIQEQLSKNRIII 78
           G C  D  GYFVIKG EKV + QEQ+   R+ I
Sbjct: 80  GNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI 112

The following BLAST results are available for this feature:
BLAST of Tan0013266 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4KD381.7e-1460.29DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRP... [more]
Q9NW082.3e-1176.32DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B P... [more]
P594702.3e-1176.32DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b ... [more]
P222761.5e-1065.85DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain... [more]
Q102332.6e-1072.97DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strai... [more]
BLAST of Tan0013266 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_028083749.11.1e-1360.00DNA-directed RNA polymerase III subunit 2 isoform X5 [Camellia sinensis][more]
XP_028083748.11.1e-1360.00DNA-directed RNA polymerase III subunit 2 isoform X4 [Camellia sinensis][more]
XP_028083744.11.1e-1360.00DNA-directed RNA polymerase III subunit 2 isoform X2 [Camellia sinensis][more]
XP_028083743.11.1e-1360.00DNA-directed RNA polymerase III subunit 2 isoform X1 [Camellia sinensis][more]
XP_028083745.11.1e-1360.00DNA-directed RNA polymerase III subunit 2 isoform X3 [Camellia sinensis] >XP_028... [more]
BLAST of Tan0013266 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2R6Q6L81.5e-1348.45DNA-directed RNA polymerase subunit beta OS=Actinidia chinensis var. chinensis O... [more]
A0A6J1CEJ11.5e-1366.18DNA-directed RNA polymerase subunit beta OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A4Y7LFK82.0e-1365.15DNA-directed RNA polymerase subunit beta OS=Papaver somniferum OX=3469 GN=C5167_... [more]
A0A4Y7L3392.0e-1365.15DNA-directed RNA polymerase subunit beta OS=Papaver somniferum OX=3469 GN=C5167_... [more]
A0A5D3BXU32.0e-1364.71DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of Tan0013266 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G45140.11.2e-1560.29nuclear RNA polymerase C2 [more]
AT4G21710.17.9e-0736.36DNA-directed RNA polymerase family protein [more]
AT3G23780.16.3e-0442.86nuclear RNA polymerase D2A [more]
AT3G23780.26.3e-0442.86nuclear RNA polymerase D2A [more]
AT3G18090.18.2e-0454.55nuclear RNA polymerase D2B [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 34..71
e-value: 1.1E-7
score: 31.6
NoneNo IPR availableGENE3D3.90.1100.10coord: 7..93
e-value: 1.1E-5
score: 26.8
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 34..91
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 34..92
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 34..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0013266.1Tan0013266.1mRNA
Tan0013266.2Tan0013266.2mRNA
Tan0013266.3Tan0013266.3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding