Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTCTTCCGAAGAGTTTCCTGCCATTCCGCACAAATGCGGTGATGAATAAAATAGAGTATAACCTGACTACTCTCCTCAACGAGCTTCATACTTTTGAGTCCCTGATGAAATCAAAAGGAAAAGAGAAGGAGGCAAATGTTGTCACTTCGAAGAAGTTCCTAAGAGGATCGCCCTCTGGGACTAAATTCAGTCCTTCCTTTTCTAAGAATAAGGGTATTCAGAAAAAGAAGAAGAAGGACAAAGGGAAGGGACAGGCTCCCGCATGCAAGGCCAAAGCCACAGGAAAATGTTTCCACTGTGGTGCAGACGGGCACTGGAAGAGGAACTGCCCGAAGTACCTTGCAGAAAAGAAAGCTGAGAAAGAAAAACAAGGAAAATATGATTTACTCGTTATTGAAACATGTTTAGTGGAACATGATGATTCCGCCTGGATATTAGATTCAGGAGCCACTAACCATGTTTGTTCTTCTTTTCAGAAACTAGTTCTGGGCAAGAAATTGTCGATGGAGAGATATCTCTCAGGGTTGGAACGGGAGAGGTTGTCTCAGCCAAAGCAGTGGGAGAAGTGA
mRNA sequence
ATGGAATCTCTTCCGAAGAGTTTCCTGCCATTCCGCACAAATGCGGTGATGAATAAAATAGAGTATAACCTGACTACTCTCCTCAACGAGCTTCATACTTTTGAGTCCCTGATGAAATCAAAAGGAAAAGAGAAGGAGGCAAATGTTGTCACTTCGAAGAAGTTCCTAAGAGGATCGCCCTCTGGGACTAAATTCAGTCCTTCCTTTTCTAAGAATAAGGGTATTCAGAAAAAGAAGAAGAAGGACAAAGGGAAGGGACAGGCTCCCGCATGCAAGGCCAAAGCCACAGGAAAATGTTTCCACTGTGGTGCAGACGGGCACTGGAAGAGGAACTGCCCGAAGTACCTTGCAGAAAAGAAAGCTGAGAAAGAAAAACAAGGAAAATATGATTTACTCGTTATTGAAACATGTTTAGTGGAACATGATGATTCCGCCTGGATATTAGATTCAGGAGCCACTAACCATGTTTGTTCTTCTTTTCAGAAACTAGTTCTGGGCAAGAAATTGTCGATGGAGAGATATCTCTCAGGGTTGGAACGGGAGAGGTTGTCTCAGCCAAAGCAGTGGGAGAAGTGA
Coding sequence (CDS)
ATGGAATCTCTTCCGAAGAGTTTCCTGCCATTCCGCACAAATGCGGTGATGAATAAAATAGAGTATAACCTGACTACTCTCCTCAACGAGCTTCATACTTTTGAGTCCCTGATGAAATCAAAAGGAAAAGAGAAGGAGGCAAATGTTGTCACTTCGAAGAAGTTCCTAAGAGGATCGCCCTCTGGGACTAAATTCAGTCCTTCCTTTTCTAAGAATAAGGGTATTCAGAAAAAGAAGAAGAAGGACAAAGGGAAGGGACAGGCTCCCGCATGCAAGGCCAAAGCCACAGGAAAATGTTTCCACTGTGGTGCAGACGGGCACTGGAAGAGGAACTGCCCGAAGTACCTTGCAGAAAAGAAAGCTGAGAAAGAAAAACAAGGAAAATATGATTTACTCGTTATTGAAACATGTTTAGTGGAACATGATGATTCCGCCTGGATATTAGATTCAGGAGCCACTAACCATGTTTGTTCTTCTTTTCAGAAACTAGTTCTGGGCAAGAAATTGTCGATGGAGAGATATCTCTCAGGGTTGGAACGGGAGAGGTTGTCTCAGCCAAAGCAGTGGGAGAAGTGA
Protein sequence
MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTSKKFLRGSPSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKAKATGKCFHCGADGHWKRNCPKYLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKLSMERYLSGLERERLSQPKQWEK
Homology
BLAST of Tan0013200 vs. NCBI nr
Match:
KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 209.9 bits (533), Expect = 1.9e-50
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 158 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 217
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 218 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPK 277
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 278 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 330
BLAST of Tan0013200 vs. NCBI nr
Match:
TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 209.9 bits (533), Expect = 1.9e-50
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 159 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 218
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 219 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPK 278
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 279 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 331
BLAST of Tan0013200 vs. NCBI nr
Match:
KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 209.9 bits (533), Expect = 1.9e-50
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 159 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 218
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 219 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPK 278
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 279 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 331
BLAST of Tan0013200 vs. NCBI nr
Match:
KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 209.9 bits (533), Expect = 1.9e-50
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 159 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 218
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 219 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPK 278
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 279 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 331
BLAST of Tan0013200 vs. NCBI nr
Match:
KAA0047792.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 209.9 bits (533), Expect = 1.9e-50
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 159 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 218
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 219 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPK 278
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 279 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 331
BLAST of Tan0013200 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 9.2e-51
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 159 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 218
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 219 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPK 278
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 279 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 331
BLAST of Tan0013200 vs. ExPASy TrEMBL
Match:
A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 9.2e-51
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 159 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 218
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 219 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPK 278
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 279 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 331
BLAST of Tan0013200 vs. ExPASy TrEMBL
Match:
A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 9.2e-51
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 276 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 335
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 336 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPK 395
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 396 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 448
BLAST of Tan0013200 vs. ExPASy TrEMBL
Match:
A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 9.2e-51
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 159 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 218
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 219 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPK 278
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 279 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 331
BLAST of Tan0013200 vs. ExPASy TrEMBL
Match:
A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 9.2e-51
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 1 MESLPKSFLPFRTNAVMNKIEYNLTTLLNELHTFESLMKSKGKEKEANVVTS-KKFLRGS 60
+ESLP+SFL FR+NAVMNKI Y LTTLLNEL TFESLMK KG++ EANV TS +KF RGS
Sbjct: 159 LESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGS 218
Query: 61 PSGTKFSPSFSKNKGIQKKKKKDKGKGQAPACKA-----KATGKCFHCGADGHWKRNCPK 120
SGTK PS S NK +KKK K A K A G CFHC +GHWKRNCPK
Sbjct: 219 TSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPK 278
Query: 121 YLAEKKAEKEKQGKYDLLVIETCLVEHDDSAWILDSGATNHVCSSFQKLVLGKKL 170
YLAEKK K KQGKYDLLV+ETCLVE+DDSAWI+DSGATNHVCSSFQ + ++L
Sbjct: 279 YLAEKK--KAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISSWRQL 331
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAA0048404.1 | 1.9e-50 | 66.86 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
TYK14550.1 | 1.9e-50 | 66.86 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
KAA0054490.1 | 1.9e-50 | 66.86 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
KAA0035879.1 | 1.9e-50 | 66.86 | gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi... | [more] |
KAA0047792.1 | 1.9e-50 | 66.86 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7SMH8 | 9.2e-51 | 66.86 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
A0A5D3CPJ6 | 9.2e-51 | 66.86 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... | [more] |
A0A5A7V4M1 | 9.2e-51 | 66.86 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... | [more] |
A0A5A7TWB9 | 9.2e-51 | 66.86 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... | [more] |
A0A5D3CSZ6 | 9.2e-51 | 66.86 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032... | [more] |
Match Name | E-value | Identity | Description | |