Tan0013179 (gene) Snake gourd v1

Overview
NameTan0013179
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG05: 66860429 .. 66862125 (+)
RNA-Seq ExpressionTan0013179
SyntenyTan0013179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTCTCTCTCTAGTTTAATTTTATTAATTTGGCCATTCACTCTCTACTCTATAAATAGCTCTCACATTCATATAGTTTCTTCATCTCATTTACAAACCTCTCTCTCTCTCTCTATTATCTTTCCCTGTTCTTTTCCCCTTTCATTTTTTGTGTTAAACTTATCCTTCTTCTTCTTCAATGGCCACTGTTGAGGTAGCCCATTTTCTCTCACCTCTCTCTCTCTCTCTCTCTTCACAAGTTTTAATCTGATATTTTAAGAAGCTTCTTCAGTCCCTTTGATCATCAACCTTTAACTCTTAATTTGATAAACTTTGGACACCCAATTTGAAAAATGGATTCTTTTTCTTGATATATAGCAAGTGGATCGATCAAATTCTATGATCAGAGCAGAGTCAGAGTCAGAAATTTTCGTATGAACGAACAAAGTTTTATGTTCCAACTTTTTATATTGTATGTCTTTTTAATCTTGGAAATTTAATGGATAAATTGGGGAAAAAAAATCTTTTTAGCTTTATTTTATATAGTTTTCTTAATCATTGGCTAATTCGCTCCTCCTCCTTTCTCCTTCTGATCTGTTGAAGTGTTATATAATTAAATTTACTATAACCTATCCGTTTAAGTTTTTAAGTTGATGGTTGATTTAACAACTACTTCCTGCCACATGCAGTTGGAAATTGAAATGATCTGTTTTTTTTGGGTGTGTATTTTTATTTGTTTGTTAATATTAAGGCAACCGAGTTTTGCAGGTTGATTCATCATCTCTACCTTTGCCTGAGACTGTGGAAGTGCCGGAGGTGGTGAAGGCCGAGGAGAAAGCCCCGGAAGAGCAGCCACCAGCCATTGAAGAAGCTCCGGCGGCTGAGCCAGCCGTCGTAGAAGAACCAAAACCCGAAGCTCCAGAGCCAGATCAGGTAGACAAGGGTAGAGTGAAGATGAAAGGAAGGGACAAGCTCCCTTAGTTTGTCATTAAAATTTTCAGAATCGAAAGATTATATTAAAAAAGAAGTTTGTCCCTGCAGGCGGAAGAACCGGCCGAAGCTCCGGTGGAGGCTGCGGAGCCGGTAGAGGAACCCAAAGTTGAGGAAGAAGAAAAGAAAGAAGAAGCAGTAGTGGCATCTGAATCAGTGGAAAAAGAAGCAGTGCCTGCAGCAGAAGAGCCAAAGGCCGAGGAGCCTCAACCCACCGAGCCTACCGCCGAACCGGAGGTGGCCGTGGCGGAGGAAGAGAAACCAGTTGAAGAAGAGAAACCAGCCGAGGTAGCAGAAGAGAAGAGCCAAGAATAGAGATCAGATGGAAAAAGCCATTATTGGAGGAAGACTATTAATTTATGATCTCATCAGCTTTGTGGGTCAACTAGTTTTATTTATGTGCTGTTTTTTTTTTGAGGGTTAAAAAAAATTGATTTCCTATTGGTTTATTGAGGTTTTTGAGTGGGAAATATCTGAATTACTAAGAAAGTTGGATGATGTAATATGGAGTATTTGAAGGATTTGGCTGCTTATATGGGGTTGAAGATGTTTTGATCTCAACTTTCTAAGAGTTATATTATTAAATTTGATAAATATTATTGGTGTGAAGATCAAAAGTGTTTTCCCTCAAAAAAATTTTAGTGAGATTAAATATTTAATTATTTATTATTTCTACTTACTAGGTTTTCTAAAGTTAAATATTGTAAGATTAGAAGTGATGGGAGGC

mRNA sequence

CCTCTCTCTCTCTAGTTTAATTTTATTAATTTGGCCATTCACTCTCTACTCTATAAATAGCTCTCACATTCATATAGTTTCTTCATCTCATTTACAAACCTCTCTCTCTCTCTCTATTATCTTTCCCTGTTCTTTTCCCCTTTCATTTTTTGTGTTAAACTTATCCTTCTTCTTCTTCAATGGCCACTGTTGAGGTTGATTCATCATCTCTACCTTTGCCTGAGACTGTGGAAGTGCCGGAGGTGGTGAAGGCCGAGGAGAAAGCCCCGGAAGAGCAGCCACCAGCCATTGAAGAAGCTCCGGCGGCTGAGCCAGCCGTCGTAGAAGAACCAAAACCCGAAGCTCCAGAGCCAGATCAGGCGGAAGAACCGGCCGAAGCTCCGGTGGAGGCTGCGGAGCCGGTAGAGGAACCCAAAGTTGAGGAAGAAGAAAAGAAAGAAGAAGCAGTAGTGGCATCTGAATCAGTGGAAAAAGAAGCAGTGCCTGCAGCAGAAGAGCCAAAGGCCGAGGAGCCTCAACCCACCGAGCCTACCGCCGAACCGGAGGTGGCCGTGGCGGAGGAAGAGAAACCAGTTGAAGAAGAGAAACCAGCCGAGGTAGCAGAAGAGAAGAGCCAAGAATAGAGATCAGATGGAAAAAGCCATTATTGGAGGAAGACTATTAATTTATGATCTCATCAGCTTTGTGGGTCAACTAGTTTTATTTATGTGCTGTTTTTTTTTTGAGGGTTAAAAAAAATTGATTTCCTATTGGTTTATTGAGGTTTTTGAGTGGGAAATATCTGAATTACTAAGAAAGTTGGATGATGTAATATGGAGTATTTGAAGGATTTGGCTGCTTATATGGGGTTGAAGATGTTTTGATCTCAACTTTCTAAGAGTTATATTATTAAATTTGATAAATATTATTGGTGTGAAGATCAAAAGTGTTTTCCCTCAAAAAAATTTTAGTGAGATTAAATATTTAATTATTTATTATTTCTACTTACTAGGTTTTCTAAAGTTAAATATTGTAAGATTAGAAGTGATGGGAGGC

Coding sequence (CDS)

ATGGCCACTGTTGAGGTTGATTCATCATCTCTACCTTTGCCTGAGACTGTGGAAGTGCCGGAGGTGGTGAAGGCCGAGGAGAAAGCCCCGGAAGAGCAGCCACCAGCCATTGAAGAAGCTCCGGCGGCTGAGCCAGCCGTCGTAGAAGAACCAAAACCCGAAGCTCCAGAGCCAGATCAGGCGGAAGAACCGGCCGAAGCTCCGGTGGAGGCTGCGGAGCCGGTAGAGGAACCCAAAGTTGAGGAAGAAGAAAAGAAAGAAGAAGCAGTAGTGGCATCTGAATCAGTGGAAAAAGAAGCAGTGCCTGCAGCAGAAGAGCCAAAGGCCGAGGAGCCTCAACCCACCGAGCCTACCGCCGAACCGGAGGTGGCCGTGGCGGAGGAAGAGAAACCAGTTGAAGAAGAGAAACCAGCCGAGGTAGCAGAAGAGAAGAGCCAAGAATAG

Protein sequence

MATVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQAEEPAEAPVEAAEPVEEPKVEEEEKKEEAVVASESVEKEAVPAAEEPKAEEPQPTEPTAEPEVAVAEEEKPVEEEKPAEVAEEKSQE
Homology
BLAST of Tan0013179 vs. NCBI nr
Match: XP_022142401.1 (uncharacterized protein LOC111012542 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-27
Identity = 104/147 (70.75%), Postives = 114/147 (77.55%), Query Frame = 0

Query: 1   MATVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQ 60
           MA+VEV+SS   LPE VE PE  K EEK+PE Q PA EE+P AEPA VEEPKPEA E DQ
Sbjct: 1   MASVEVESSVANLPENVEAPE-AKVEEKSPEVQ-PASEESPVAEPADVEEPKPEATEADQ 60

Query: 61  AEEPAEAPVEAAEPVEEPKVEEEEKKEEAVVASESVEKEAVPAAEEPKAEEPQPTEPTAE 120
           A + A+AP EA E  EEP+VEEEEKKEEA  A ESV+KEAVPAAEEPKAEE Q  EP AE
Sbjct: 61  AVQSAKAPEEAVEAAEEPRVEEEEKKEEAAEA-ESVDKEAVPAAEEPKAEESQTAEPAAE 120

Query: 121 PEVAVAEEEKPVEEEKPAEVAEEKSQE 148
           P  A  E+EKPVE+EK AEVAEEKSQE
Sbjct: 121 PAAAAVEDEKPVEKEKAAEVAEEKSQE 144

BLAST of Tan0013179 vs. NCBI nr
Match: XP_038895685.1 (cytochrome c1-like [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 106/148 (71.62%), Postives = 112/148 (75.68%), Query Frame = 0

Query: 1   MATVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQ 60
           MAT EV+S++  LPETVE PEVVKAEEK PEEQ PA E  P AE A VE+PKPE  E DQ
Sbjct: 1   MAT-EVESAA-TLPETVESPEVVKAEEKTPEEQ-PATEAKPEAESANVEKPKPEVQESDQ 60

Query: 61  AEEPAEAPVEAAEPVEEPKVEEEEKKEEAVVASESVEK-EAVPAAEEPKAEEPQPTEPTA 120
           AE+ AEAP E   P EEPKVEEEEKKEEAVV +ESV K E VP AEEPKAEEP   E  A
Sbjct: 61  AEQTAEAPAEPENPTEEPKVEEEEKKEEAVVPTESVAKEEEVPEAEEPKAEEPPAAEAEA 120

Query: 121 EPEVAVAEEEKPVEEEKPAEVAEEKSQE 148
           E E A AEEEK VEEEKPAEVAEEK QE
Sbjct: 121 EAEPA-AEEEKQVEEEKPAEVAEEKGQE 144

BLAST of Tan0013179 vs. NCBI nr
Match: XP_008458953.1 (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 100/150 (66.67%), Postives = 110/150 (73.33%), Query Frame = 0

Query: 1   MATVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQ 60
           MAT EV+ ++ PLPETV   EVVK EEK+PEEQ P IE  P  EP  +EEPKPEAPEPDQ
Sbjct: 1   MAT-EVEPAA-PLPETV---EVVKVEEKSPEEQ-PVIEADPEVEPTNLEEPKPEAPEPDQ 60

Query: 61  AEEPAEAPVEAAEPVEEPKVEE-EEKKEEAVVASESVEK-EAVPAAEEP-KAEEPQPTEP 120
            +E  EAPVE+A PVEE KVEE +EKKEE VV +E+VEK EAV   EEP KAEE    E 
Sbjct: 61  TDESTEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEV 120

Query: 121 TAEPEVAVAEEEKPVEEEKPAEVAEEKSQE 148
            AEP V   EEEK VEEEKP EVAEEKSQE
Sbjct: 121 EAEPPV---EEEKVVEEEKPVEVAEEKSQE 141

BLAST of Tan0013179 vs. NCBI nr
Match: KAA0054325.1 (putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa] >TYK12361.1 putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-18
Identity = 97/148 (65.54%), Postives = 109/148 (73.65%), Query Frame = 0

Query: 3   TVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQAE 62
           ++EV+ ++ PLPETV   EVVK EEK+PEEQ P IE  P  EP  +EEPKPEAPEPDQ +
Sbjct: 19  SLEVEPAA-PLPETV---EVVKVEEKSPEEQ-PVIEADPEVEPTNLEEPKPEAPEPDQTD 78

Query: 63  EPAEAPVEAAEPVEEPKVEE-EEKKEEAVVASESVEK-EAVPAAEEP-KAEEPQPTEPTA 122
           E  EAPVE+A PVEE KVEE +EKKEE VV +E+VEK EAV   EEP KAEE    E  A
Sbjct: 79  ESTEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEA 138

Query: 123 EPEVAVAEEEKPVEEEKPAEVAEEKSQE 148
           EP V   EEEK VEEEKP EVAEEKSQE
Sbjct: 139 EPPV---EEEKVVEEEKPVEVAEEKSQE 158

BLAST of Tan0013179 vs. NCBI nr
Match: XP_004139547.1 (uncharacterized protein LOC101220582 [Cucumis sativus] >KGN65063.1 hypothetical protein Csa_013003 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 94/150 (62.67%), Postives = 104/150 (69.33%), Query Frame = 0

Query: 1   MATVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQ 60
           MAT EV+S++  LPETV   EVVK E+K+ EEQ P IE  P  EPA +EEPKPEA EPDQ
Sbjct: 1   MAT-EVESAA-SLPETV---EVVKVEKKSSEEQ-PVIEADPEVEPANLEEPKPEALEPDQ 60

Query: 61  AEEPAEAPVEAAEPVEEPKVEE-EEKKEEAVVASESVEK-EAVPAAEE-PKAEEPQPTEP 120
            EE  EA      PVEE KVEE +EKKEE VVA+ES EK EAVP AEE  K EE    E 
Sbjct: 61  VEESTEA------PVEESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPAAEV 120

Query: 121 TAEPEVAVAEEEKPVEEEKPAEVAEEKSQE 148
            AE +  V EEEK +EEEKP EVAEEKSQE
Sbjct: 121 EAEAKPQV-EEEKAIEEEKPTEVAEEKSQE 137

BLAST of Tan0013179 vs. ExPASy TrEMBL
Match: A0A6J1CM25 (uncharacterized protein LOC111012542 OS=Momordica charantia OX=3673 GN=LOC111012542 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 104/147 (70.75%), Postives = 114/147 (77.55%), Query Frame = 0

Query: 1   MATVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQ 60
           MA+VEV+SS   LPE VE PE  K EEK+PE Q PA EE+P AEPA VEEPKPEA E DQ
Sbjct: 1   MASVEVESSVANLPENVEAPE-AKVEEKSPEVQ-PASEESPVAEPADVEEPKPEATEADQ 60

Query: 61  AEEPAEAPVEAAEPVEEPKVEEEEKKEEAVVASESVEKEAVPAAEEPKAEEPQPTEPTAE 120
           A + A+AP EA E  EEP+VEEEEKKEEA  A ESV+KEAVPAAEEPKAEE Q  EP AE
Sbjct: 61  AVQSAKAPEEAVEAAEEPRVEEEEKKEEAAEA-ESVDKEAVPAAEEPKAEESQTAEPAAE 120

Query: 121 PEVAVAEEEKPVEEEKPAEVAEEKSQE 148
           P  A  E+EKPVE+EK AEVAEEKSQE
Sbjct: 121 PAAAAVEDEKPVEKEKAAEVAEEKSQE 144

BLAST of Tan0013179 vs. ExPASy TrEMBL
Match: A0A1S3C9M0 (probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC103498212 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.5e-19
Identity = 100/150 (66.67%), Postives = 110/150 (73.33%), Query Frame = 0

Query: 1   MATVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQ 60
           MAT EV+ ++ PLPETV   EVVK EEK+PEEQ P IE  P  EP  +EEPKPEAPEPDQ
Sbjct: 1   MAT-EVEPAA-PLPETV---EVVKVEEKSPEEQ-PVIEADPEVEPTNLEEPKPEAPEPDQ 60

Query: 61  AEEPAEAPVEAAEPVEEPKVEE-EEKKEEAVVASESVEK-EAVPAAEEP-KAEEPQPTEP 120
            +E  EAPVE+A PVEE KVEE +EKKEE VV +E+VEK EAV   EEP KAEE    E 
Sbjct: 61  TDESTEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEV 120

Query: 121 TAEPEVAVAEEEKPVEEEKPAEVAEEKSQE 148
            AEP V   EEEK VEEEKP EVAEEKSQE
Sbjct: 121 EAEPPV---EEEKVVEEEKPVEVAEEKSQE 141

BLAST of Tan0013179 vs. ExPASy TrEMBL
Match: A0A5D3CKL4 (Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001390 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.2e-19
Identity = 97/148 (65.54%), Postives = 109/148 (73.65%), Query Frame = 0

Query: 3   TVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQAE 62
           ++EV+ ++ PLPETV   EVVK EEK+PEEQ P IE  P  EP  +EEPKPEAPEPDQ +
Sbjct: 19  SLEVEPAA-PLPETV---EVVKVEEKSPEEQ-PVIEADPEVEPTNLEEPKPEAPEPDQTD 78

Query: 63  EPAEAPVEAAEPVEEPKVEE-EEKKEEAVVASESVEK-EAVPAAEEP-KAEEPQPTEPTA 122
           E  EAPVE+A PVEE KVEE +EKKEE VV +E+VEK EAV   EEP KAEE    E  A
Sbjct: 79  ESTEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEA 138

Query: 123 EPEVAVAEEEKPVEEEKPAEVAEEKSQE 148
           EP V   EEEK VEEEKP EVAEEKSQE
Sbjct: 139 EPPV---EEEKVVEEEKPVEVAEEKSQE 158

BLAST of Tan0013179 vs. ExPASy TrEMBL
Match: A0A0A0LTG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.7e-13
Identity = 94/150 (62.67%), Postives = 104/150 (69.33%), Query Frame = 0

Query: 1   MATVEVDSSSLPLPETVEVPEVVKAEEKAPEEQPPAIEEAPAAEPAVVEEPKPEAPEPDQ 60
           MAT EV+S++  LPETV   EVVK E+K+ EEQ P IE  P  EPA +EEPKPEA EPDQ
Sbjct: 1   MAT-EVESAA-SLPETV---EVVKVEKKSSEEQ-PVIEADPEVEPANLEEPKPEALEPDQ 60

Query: 61  AEEPAEAPVEAAEPVEEPKVEE-EEKKEEAVVASESVEK-EAVPAAEE-PKAEEPQPTEP 120
            EE  EA      PVEE KVEE +EKKEE VVA+ES EK EAVP AEE  K EE    E 
Sbjct: 61  VEESTEA------PVEESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPAAEV 120

Query: 121 TAEPEVAVAEEEKPVEEEKPAEVAEEKSQE 148
            AE +  V EEEK +EEEKP EVAEEKSQE
Sbjct: 121 EAEAKPQV-EEEKAIEEEKPTEVAEEKSQE 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022142401.13.9e-2770.75uncharacterized protein LOC111012542 [Momordica charantia][more]
XP_038895685.11.8e-2471.62cytochrome c1-like [Benincasa hispida][more]
XP_008458953.11.1e-1866.67PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo][more]
KAA0054325.11.5e-1865.54putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa] >TYK123... [more]
XP_004139547.11.6e-1262.67uncharacterized protein LOC101220582 [Cucumis sativus] >KGN65063.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
A0A6J1CM251.9e-2770.75uncharacterized protein LOC111012542 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A1S3C9M05.5e-1966.67probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A5D3CKL47.2e-1965.54Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0LTG97.7e-1362.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0013179.1Tan0013179.1mRNA