Tan0013174 (gene) Snake gourd v1

Overview


Name	Tan0013174
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG02: 42777024 .. 42777377 (+)
RNA-Seq Expression	Tan0013174
Synteny	Tan0013174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGAAGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATCTAGCCAAACCCCTGTAGTAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTTAGTTGCTTCTTTATCCGTCCAACAACTACAGGACATGATCATGAGTTCTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTTTCACATACTCTAAATCGTACACTAAGAGGATTGACAATTTGAGGATGCCCGCAGGATACCAACCTCCAAAGTTCCAGTAG

mRNA sequence

ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGAAGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATCTAGCCAAACCCCTGTAGTAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTTAGTTGCTTCTTTATCCGTCCAACAACTACAGGACATGATCATGAGTTCTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTTTCACATACTCTAAATCGTACACTAAGAGGATTGACAATTTGAGGATGCCCGCAGGATACCAACCTCCAAAGTTCCAGTAG

Coding sequence (CDS)

ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGAAGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATCTAGCCAAACCCCTGTAGTAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTTAGTTGCTTCTTTATCCGTCCAACAACTACAGGACATGATCATGAGTTCTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTTTCACATACTCTAAATCGTACACTAAGAGGATTGACAATTTGAGGATGCCCGCAGGATACCAACCTCCAAAGTTCCAGTAG

Protein sequence

MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLALVASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ

Homology

[Close]

BLAST of Tan0013174 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 90/118 (76.27%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0013174 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 90/118 (76.27%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0013174 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 90/118 (76.27%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0013174 vs. NCBI nr
Match: XP_031744658.1 (uncharacterized protein LOC116405107 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 90/118 (76.27%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0013174 vs. NCBI nr
Match: XP_031740568.1 (uncharacterized protein LOC116403508 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 90/118 (76.27%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0013174 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.0e-36
Identity = 86/118 (72.88%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           MAEMERKIN LMK VEERD EI  L+ Q++ +E  ESSQTP+V+  DKGKN++QE QP Q
Sbjct: 95  MAEMERKINFLMKAVEERDHEIIALREQMRTRETAESSQTPIVKATDKGKNVVQENQPQQ 154

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            ++ VASLSVQQLQDMI +SIRAQYGGP Q  F YSKSYTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSVSVASLSVQQLQDMIANSIRAQYGGPPQTTFMYSKSYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0013174 vs. ExPASy TrEMBL
Match: A0A5D3BZH8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002100 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.7e-36
Identity = 88/118 (74.58%), Postives = 96/118 (81.36%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           MAEMERKIN LMK VEERD EIA LK Q++  E  ESSQTPVV+  DKGKN++QE QP Q
Sbjct: 95  MAEMERKINFLMKVVEERDHEIAALKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQ 154

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            ++ VASLSVQQLQDMI +SIRAQYGGP Q  F YSK YTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSVSVASLSVQQLQDMIANSIRAQYGGPPQTTFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0013174 vs. ExPASy TrEMBL
Match: A0A5D3DIN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00020 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 85/118 (72.03%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           M EME+KIN LMK VEERD EIA LK Q++  E  ESS+TPVV+  DKGKN++QE QP Q
Sbjct: 95  MVEMEKKINFLMKVVEERDHEIAALKDQMKAYETAESSKTPVVKATDKGKNVVQENQPQQ 154

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            ++ VASLSVQQLQDMI++SIRAQYGGP+Q  F YSK YTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSISVASLSVQQLQDMIVNSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0013174 vs. ExPASy TrEMBL
Match: A0A5A7TC87 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00670 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 85/118 (72.03%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           M EME+KIN LMK VEERD EIA LK Q++  E  ESS+TPVV+  DKGKN++QE QP Q
Sbjct: 95  MVEMEKKINFLMKVVEERDHEIAALKDQMKAYETAESSKTPVVKATDKGKNVVQENQPQQ 154

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            ++ VASLSVQQLQDMI++SIRAQYGGP+Q  F YSK YTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSISVASLSVQQLQDMIVNSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0013174 vs. ExPASy TrEMBL
Match: A0A5A7VCU1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00120 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.0e-35
Identity = 86/118 (72.88%), Postives = 96/118 (81.36%), Query Frame = 0


Query: 1   MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQ 60
           MAEMERKIN LMK VEERD EI  L+ Q+Q +E VESSQT VV+  DKGKN++QE QP Q
Sbjct: 123 MAEMERKINFLMKVVEERDHEITALREQMQTRETVESSQTSVVKATDKGKNVVQENQPQQ 182

Query: 61  LAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAGYQPPKFQ 118
            ++ VASLSVQQLQ+MI +S RAQYGGP Q  F YSKSYTKRIDNLRMP GYQPPKFQ
Sbjct: 183 QSVSVASLSVQQLQNMITNSNRAQYGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPKFQ 240

The following BLAST results are available for this feature:

BLAST of Tan0013174 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013174 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	1.1e-37	76.27	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	1.1e-37	76.27	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031737053.1	1.1e-37	76.27	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]
XP_031744658.1	1.1e-37	76.27	uncharacterized protein LOC116405107 [Cucumis sativus]	[more]
XP_031740568.1	1.1e-37	76.27	uncharacterized protein LOC116403508 [Cucumis sativus]	[more]

BLAST of Tan0013174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	1.0e-36	72.88	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BZH8	6.7e-36	74.58	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DIN4	1.1e-35	72.03	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TC87	1.1e-35	72.03	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VCU1	2.0e-35	72.88	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Tan0013174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013174.1	Tan0013174.1	mRNA