Tan0013149 (gene) Snake gourd v1

Overview


Name	Tan0013149
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Zinc finger, FYVE/PHD-type
Location	LG10: 808654 .. 809488 (+)
RNA-Seq Expression	Tan0013149
Synteny	Tan0013149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATCTTCATCCTCATCGTCACTGTCACCTTCACCATCACCATGGATACTTTCCATCATCCCCTTCACCGCGTCTGTTGCTTGTGCGGCGACGTCGGCTTTCCGGCCAACCTCTTTCGATGCACCAACTGCTATGATCGCTTTCAACATTCGTAAGAATTCGTTCGTTTGCTAATATTTATGTTTCTTGTTCTTTTAAATTGAAAAGAATTATAACAATCTGTAATAGTTGTTTGGGATGCTGAGTAAATTATAATAATAACCTGTTATTATAATTTGTAAAATCATATAATATTATTTAAAATCAACATTAATATAGTATGAGATTATAATTGCATGTGTCTGAGTGCATACAATTACACAATTTAGTATAACACGTGTCGCATGCTCGCTCTAAATACACAATCTATTATAACCATATTTTCATAACTCACGTCTCTAGCTAACGGTTATCATAGGGTCATAGAAATAAGAAAAACCTTATCAAACAAGTTTCACTACATTTGTATTTGAGATTTTTTTTCTTCCTTTTTTTTTATATATGCGTGTGACGATGTCAAATTGATTAATGGATGTTGAGGGGTTGGTTTCAGTTATTGCAGTAACTATTACGGGGAAACGACGGAGGCGATTGAAGTGTGCGATTGGTGCAGAAGTGAACAGAGAAGTGGCGGCGGCCGTCGTGGCTCTACAAGGAAGCCTGTTGCTAACGATGATGGCGCCGTAACCGGGAAGGGCTCCGGCCAGGATAAAAGAGAAAGAAACTCTGGCGGAATGTCGTCGTCTCGGCCTGCTCCACGCCGGTACAAGCTTCTCAAGGATGTTATGTGTTGA

mRNA sequence

CTTCATCTTCATCCTCATCGTCACTGTCACCTTCACCATCACCATGGATACTTTCCATCATCCCCTTCACCGCGTCTGTTGCTTGTGCGGCGACGTCGGCTTTCCGGCCAACCTCTTTCGATGCACCAACTGCTATGATCGCTTTCAACATTCTTATTGCAGTAACTATTACGGGGAAACGACGGAGGCGATTGAAGTGTGCGATTGGTGCAGAAGTGAACAGAGAAGTGGCGGCGGCCGTCGTGGCTCTACAAGGAAGCCTGTTGCTAACGATGATGGCGCCGTAACCGGGAAGGGCTCCGGCCAGGATAAAAGAGAAAGAAACTCTGGCGGAATGTCGTCGTCTCGGCCTGCTCCACGCCGGTACAAGCTTCTCAAGGATGTTATGTGTTGA

Coding sequence (CDS)

ATGGATACTTTCCATCATCCCCTTCACCGCGTCTGTTGCTTGTGCGGCGACGTCGGCTTTCCGGCCAACCTCTTTCGATGCACCAACTGCTATGATCGCTTTCAACATTCTTATTGCAGTAACTATTACGGGGAAACGACGGAGGCGATTGAAGTGTGCGATTGGTGCAGAAGTGAACAGAGAAGTGGCGGCGGCCGTCGTGGCTCTACAAGGAAGCCTGTTGCTAACGATGATGGCGCCGTAACCGGGAAGGGCTCCGGCCAGGATAAAAGAGAAAGAAACTCTGGCGGAATGTCGTCGTCTCGGCCTGCTCCACGCCGGTACAAGCTTCTCAAGGATGTTATGTGTTGA

Protein sequence

MDTFHHPLHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRSGGGRRGSTRKPVANDDGAVTGKGSGQDKRERNSGGMSSSRPAPRRYKLLKDVMC

Homology

[Close]

BLAST of Tan0013149 vs. NCBI nr
Match: XP_023540879.1 (uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-38
Identity = 84/112 (75.00%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 5   HHPLHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRSGG 64
           HHPL  VCCLCGDVGFPANLFRCT C  RFQHSYCSNYYGE  EAIEVCDWCR E+R   
Sbjct: 4   HHPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGELAEAIEVCDWCRCERRC-- 63

Query: 65  GRRGSTRKPVANDDGAVTGKGSGQDKRERNSGGMSSSRPAPRRYKLLKDVMC 117
           GRRGS     A   G  + K SGQDKRERNSGGM S R APRRYKLLKDVMC
Sbjct: 64  GRRGS----AARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 109

[Close]

BLAST of Tan0013149 vs. NCBI nr
Match: KAG6597027.1 (hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 84/116 (72.41%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 5   HH----PLHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQ 64
           HH    PL  VCCLCGDVGFPANLFRCT C  RFQHSYCSNYYGET EAIE CDWCR E+
Sbjct: 4   HHPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCRCER 63

Query: 65  RSGGGRRGSTRKPVANDDGAVTGKGSGQDKRERNSGGMSSSRPAPRRYKLLKDVMC 117
           R   GRRGS     A   G  + K SGQDKRERNSGGM S R APRRYKLLKDVMC
Sbjct: 64  RC--GRRGS----AARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113

[Close]

BLAST of Tan0013149 vs. NCBI nr
Match: XP_022974251.1 (uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-36
Identity = 82/110 (74.55%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 7   PLHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRSGGGR 66
           PL  VCCLCGDVGFPANLFRCT C  RFQHSYCSNYYGE+ EAIEVCDWCR E+R   GR
Sbjct: 14  PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRC--GR 73

Query: 67  RGSTRKPVANDDGAVTGKGSGQDKRERNSGGMSSSRPAPRRYKLLKDVMC 117
           RGS     A   G  + K SGQDKRERNSGGM S R APRRYKLLKDVMC
Sbjct: 74  RGS----AARKFGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of Tan0013149 vs. NCBI nr
Match: KAG7028505.1 (hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-36
Identity = 83/114 (72.81%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 5   HH--PLHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRS 64
           HH  PL  VCCLCGDVGFPANLFRCT C  RFQHSYCSNYYGE  EAIE CDWCR E+R 
Sbjct: 4   HHPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRC 63

Query: 65  GGGRRGSTRKPVANDDGAVTGKGSGQDKRERNSGGMSSSRPAPRRYKLLKDVMC 117
             GRRGS     A   G  + K SGQDKRERNSGGM S R APRRYKLLKDVMC
Sbjct: 64  --GRRGS----AARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 111

[Close]

BLAST of Tan0013149 vs. NCBI nr
Match: XP_022974249.1 (uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima])

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35
Identity = 81/110 (73.64%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 7   PLHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRSGGGR 66
           PL  VCCLCGDVGFPANLFRCT C  RFQHSYCSNYYGE+ EAIEVCDWCR E+R   GR
Sbjct: 14  PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRC--GR 73

Query: 67  RGSTRKPVANDDGAVTGKGSGQDKRERNSGGMSSSRPAPRRYKLLKDVMC 117
           RGS  +       A   K SGQDKRERNSGGM S R APRRYKLLKDVMC
Sbjct: 74  RGSAARKFG---VASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 118

[Close]

BLAST of Tan0013149 vs. ExPASy TrEMBL
Match: A0A6J1IAU2 (uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 82/110 (74.55%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 7   PLHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRSGGGR 66
           PL  VCCLCGDVGFPANLFRCT C  RFQHSYCSNYYGE+ EAIEVCDWCR E+R   GR
Sbjct: 14  PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRC--GR 73

Query: 67  RGSTRKPVANDDGAVTGKGSGQDKRERNSGGMSSSRPAPRRYKLLKDVMC 117
           RGS     A   G  + K SGQDKRERNSGGM S R APRRYKLLKDVMC
Sbjct: 74  RGS----AARKFGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of Tan0013149 vs. ExPASy TrEMBL
Match: A0A6J1IH20 (uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 81/110 (73.64%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 7   PLHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRSGGGR 66
           PL  VCCLCGDVGFPANLFRCT C  RFQHSYCSNYYGE+ EAIEVCDWCR E+R   GR
Sbjct: 14  PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRC--GR 73

Query: 67  RGSTRKPVANDDGAVTGKGSGQDKRERNSGGMSSSRPAPRRYKLLKDVMC 117
           RGS  +       A   K SGQDKRERNSGGM S R APRRYKLLKDVMC
Sbjct: 74  RGSAARKFG---VASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 118

[Close]

BLAST of Tan0013149 vs. ExPASy TrEMBL
Match: A0A7J7I2F5 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_000411 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 65/124 (52.42%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 8   LHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRSGGGRR 67
           L  VCC+CGDVGFP  LFRC  C++RFQHSYCSNYY E++E IE+CDWC+SE+RS     
Sbjct: 4   LQTVCCMCGDVGFPEKLFRCNKCHNRFQHSYCSNYYSESSEPIELCDWCQSEERSSTRHG 63

Query: 68  GSTRKPVANDDGAVTGKG--SG-----QDKRE--------RNSGGMSSSRPAPRRYKLLK 117
            S++K   ++D A T +   SG      D RE        +N  G  S RP+ RRYKLLK
Sbjct: 64  SSSKKSSTSNDTAATKRSEYSGDKIKQHDHREDTATAEKGKNPTGAPSPRPSTRRYKLLK 123

[Close]

BLAST of Tan0013149 vs. ExPASy TrEMBL
Match: A0A1Q3D081 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29323 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 63/122 (51.64%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 8   LHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRSGGGRR 67
           L  VCC+CGDVGFP  LFRC  C +RFQHSYCSNYY E  E IE+CDWC+SE+R+     
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCYKCRNRFQHSYCSNYYSEFAEPIELCDWCQSEERTSSRHG 63

Query: 68  GSTRK-PVANDDGAVT------------GKGSGQDKRERNSGGMSSSRPAPRRYKLLKDV 117
            S++K  V ND GA               +  G D++ +N  G+ S RP  RRYKLLKDV
Sbjct: 64  SSSKKSAVGNDVGATNRSEYSGDKIKQHDREEGTDQKGKNPSGVPSPRPTTRRYKLLKDV 123

[Close]

BLAST of Tan0013149 vs. ExPASy TrEMBL
Match: A0A5B6YSM7 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_004305 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.4e-25
Identity = 65/123 (52.85%), Postives = 80/123 (65.04%), Query Frame = 0


Query: 8   LHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRSGGGRR 67
           L  VCC+CGDVGFP  LFRC+ C++RFQHSYCSNYY E++E IE+CDWC+SE+RS   R 
Sbjct: 29  LQTVCCMCGDVGFPDKLFRCSKCHNRFQHSYCSNYYSESSEPIELCDWCQSEERS--ARH 88

Query: 68  G-STRKPVANDDGAVTGKG--SGQDK-----------RERNSGGMSSSRPAPRRYKLLKD 117
           G S++K     +  VT +   SG DK           + +N  G  S RP  RRYKLLKD
Sbjct: 89  GSSSKKSSTGHEAGVTSRSEYSGGDKVKQHDREESAEKGKNPSGTPSPRPTTRRYKLLKD 148

[Close]

BLAST of Tan0013149 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-23
Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 8   LHRVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQR--SGGG 67
           + RVCC+CGDVGF   LF C +C  RFQHSYCSNYYG+  E  E+CDWCRS+ R  S   
Sbjct: 1   MERVCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDRKLSNVA 60

Query: 68  RRG--STRKPVA-----NDDGAVTGKGSGQDKRERNS-------------GGMSSSRPAP 117
           R G  S++KP +     ND    +    G   +  N+             GG++S + A 
Sbjct: 61  RHGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTAT 120

[Close]

BLAST of Tan0013149 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-22
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 10  RVCCLCGDVGFPANLFRCTNCYDRFQHSYCSNYYGETTEAIEVCDWCRSEQRS------- 69
           RVCC+CGDVGF   LF C+ C +RFQHSYCS+YY E  + I++CDWC+ E +S       
Sbjct: 7   RVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAKSRTGAKHG 66

Query: 70  --GGGRRGSTRKPVANDDGAV-------TGKGSGQDKRERNSGGMSSSRPAPRRYKLLKD 117
             GG  + S R   ++    +       T   S     ++   G+ S RPA RRYKLLKD
Sbjct: 67  VNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLLKD 126

The following BLAST results are available for this feature:

BLAST of Tan0013149 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013149 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540879.1	3.9e-38	75.00	uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo]	[more]
KAG6597027.1	1.2e-36	72.41	hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022974251.1	3.6e-36	74.55	uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima]	[more]
KAG7028505.1	3.6e-36	72.81	hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022974249.1	2.3e-35	73.64	uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima]	[more]

BLAST of Tan0013149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAU2	1.8e-36	74.55	uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IH20	1.1e-35	73.64	uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A7J7I2F5	1.4e-25	52.42	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_000411 PE=4 SV=1	[more]
A0A1Q3D081	1.4e-25	51.64	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29323 PE=4...	[more]
A0A5B6YSM7	2.4e-25	52.85	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_004305...	[more]

BLAST of Tan0013149 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02070.1	3.7e-23	45.80	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G60520.1	1.9e-22	43.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..107
None	No IPR available	PANTHER	PTHR33779:SF16	SUBFAMILY NOT NAMED	coord: 8..93
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 8..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013149.1	Tan0013149.1	mRNA