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Tan0013088 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTAAAAATAAGACTTTGGGGACAAAAGTTGGAGGGAGTGAAGAGAGGGAGAGAGAAATGGACTACAGCTTAGCAGCGTTGAAGCTTGTGTGCGGGCAGCTGAAAGACGCCCGCCAAACTCCGTCCAACAACACCGCCACTCTCGGCGGCATTCTCTTCCAACGCGTCTGGCTTCAGGTCCTCTCTTCCACATCCTTTCTCTTCATCCTTTCTCTCTAATCACACCTCTCCCAACCAACAGGGGATTTTGGTCTCCGTCGACAACCACAATGCTAAATGCATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTCTCTCGCGACTTTCGTCTCCGCACTTGGAACCTCGGTAATCTCATTTTCCCCTACTACTTTCCTTTCTTTTCTTTTTTCCTGCGTTTTAATGGTTTCTTTTTGTTTTTGTGCAGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACCAATGAACCGCCGATTATTGGGGTGAGATTCCGACTTTATCCTCTCTTCTTTCTTCTTCCTCCGCTTGAAATTGAAATATAAACCTAATAAAACATATCACTCTGCCAATTTGTTATGTTTCCTCTATTATGGCTGGGACCAGATAAGCCAACTGCCTTAGAAGAATCTTGGTGGATAATCCTGTGTTTTCAGATGTTTCTTTTATTATCATTCAATAAAATCTCTGTTGCTATCAATCTTTGGGATGTTTGACACCTCTTAATTTCAAGCAAGTTGTATCCAAATACTTCCAACCCTTCACCTGTCTTTACCTCTCTTTTCATTCCTTTCTTTCCACATTTTCTGGTGTTCGAGTTGTAGTTGTGATGTTTTATTTCATCATTATTTGATGTCCCACGCACTGGTGATTAACTTTCTTAGGGACTTTGTTGTCCCCTTAACATGACAATAGCCCAATTTGCTGGTGTTCGAGTTAGGGACTTTCTTGTCTCTTTTGTGATTAATGTCATTTCCCGTGTTTCTTATAAAAAAAAATGACAGCCCAATTAACACTAAATTCCTTACCATGTGTAATACTTAGAAGGAAACACTGTGTTCATAACTTAAGGTAAAGTTATTCAATGGCATGGAGTTTCAATATCTAGTTTAGTTAGTGAATTTTATGATTTTATGTTTCCATTAGGTGCACAAGATTGTTGATCTTTCAAACTTTCCTGGTCGAGAGGCGATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTGGAAGAATTTTTATAAATCTTTCTGTTGACTTGACAGGTGATGTTTATTGAATTTGTCATGTTAATCTTGTTAAGCTAAGCAAAATGCTTCAATTTGTTGAAGCCCACAGAAGGGTTTTTCTTTTATTAGTAATTATTTATAAAATTCAGTTGAAATTCAACTTATGTATTGTTATGATCATCTTTATTGATTTAGTAAGATCAAATCTCTAACTTAGAGAATCAGAGTATACCCTTTCCCTTGGTAGGCACAACTGAGAAAATATAAATAGGTAAGGATAGAAAGACTAAGAGAGCCAATTCTATTCCTCAGTCTGTCTTTGATGATGCCAAAATAGACTTTACC ATTAAAAATAAGACTTTGGGGACAAAAGTTGGAGGGAGTGAAGAGAGGGAGAGAGAAATGGACTACAGCTTAGCAGCGTTGAAGCTTGTGTGCGGGCAGCTGAAAGACGCCCGCCAAACTCCGTCCAACAACACCGCCACTCTCGGCGGCATTCTCTTCCAACGCGTCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAACCACAATGCTAAATGCATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTCTCTCGCGACTTTCGTCTCCGCACTTGGAACCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACCAATGAACCGCCGATTATTGGGGTGCACAAGATTGTTGATCTTTCAAACTTTCCTGGTCGAGAGGCGATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTGGAAGAATTTTTATAAATCTTTCTGTTGACTTGACAGGTGATGTTTATTGAATTTGTCATGTTAATCTTGTTAAGCTAAGCAAAATGCTTCAATTTGTTGAAGCCCACAGAAGGGTTTTTCTTTTATTAGTAATTATTTATAAAATTCAGTTGAAATTCAACTTATGTATTGTTATGATCATCTTTATTGATTTAGTAAGATCAAATCTCTAACTTAGAGAATCAGAGTATACCCTTTCCCTTGGTAGGCACAACTGAGAAAATATAAATAGGTAAGGATAGAAAGACTAAGAGAGCCAATTCTATTCCTCAGTCTGTCTTTGATGATGCCAAAATAGACTTTACC ATGGACTACAGCTTAGCAGCGTTGAAGCTTGTGTGCGGGCAGCTGAAAGACGCCCGCCAAACTCCGTCCAACAACACCGCCACTCTCGGCGGCATTCTCTTCCAACGCGTCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAACCACAATGCTAAATGCATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTCTCTCGCGACTTTCGTCTCCGCACTTGGAACCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACCAATGAACCGCCGATTATTGGGGTGCACAAGATTGTTGATCTTTCAAACTTTCCTGGTCGAGAGGCGATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTGGAAGAATTTTTATAA MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVHKIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL Homology
BLAST of Tan0013088 vs. ExPASy Swiss-Prot
Match: Q96E14 (RecQ-mediated genome instability protein 2 OS=Homo sapiens OX=9606 GN=RMI2 PE=1 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05 Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = 0
BLAST of Tan0013088 vs. ExPASy Swiss-Prot
Match: Q3UPE3 (RecQ-mediated genome instability protein 2 OS=Mus musculus OX=10090 GN=Rmi2 PE=2 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 8.9e-05 Identity = 43/128 (33.59%), Postives = 66/128 (51.56%), Query Frame = 0
BLAST of Tan0013088 vs. ExPASy Swiss-Prot
Match: A5PJU7 (RecQ-mediated genome instability protein 2 OS=Bos taurus OX=9913 GN=RMI2 PE=2 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 7.5e-04 Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 0
BLAST of Tan0013088 vs. ExPASy Swiss-Prot
Match: Q5ZM20 (RecQ-mediated genome instability protein 2 OS=Gallus gallus OX=9031 GN=RMI2 PE=2 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 7.5e-04 Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 0
BLAST of Tan0013088 vs. NCBI nr
Match: XP_022152884.1 (recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_022152885.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia]) HSP 1 Score: 241.5 bits (615), Expect = 4.2e-60 Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 0
BLAST of Tan0013088 vs. NCBI nr
Match: XP_038894076.1 (uncharacterized protein LOC120082820 [Benincasa hispida]) HSP 1 Score: 238.0 bits (606), Expect = 4.6e-59 Identity = 115/134 (85.82%), Postives = 121/134 (90.30%), Query Frame = 0
BLAST of Tan0013088 vs. NCBI nr
Match: XP_022964663.1 (uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_023519120.1 uncharacterized protein LOC111782580 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6583596.1 RecQ-mediated genome instability protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019296.1 RecQ-mediated genome instability protein 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 233.8 bits (595), Expect = 8.7e-58 Identity = 115/134 (85.82%), Postives = 118/134 (88.06%), Query Frame = 0
BLAST of Tan0013088 vs. NCBI nr
Match: XP_022970350.1 (uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharacterized protein LOC111469342 [Cucurbita maxima]) HSP 1 Score: 233.4 bits (594), Expect = 1.1e-57 Identity = 114/134 (85.07%), Postives = 118/134 (88.06%), Query Frame = 0
BLAST of Tan0013088 vs. NCBI nr
Match: XP_008462275.1 (PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096.1 recQ-mediated genome instability protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 226.9 bits (577), Expect = 1.1e-55 Identity = 112/135 (82.96%), Postives = 117/135 (86.67%), Query Frame = 0
BLAST of Tan0013088 vs. ExPASy TrEMBL
Match: A0A6J1DF83 (recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020510 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 2.0e-60 Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 0
BLAST of Tan0013088 vs. ExPASy TrEMBL
Match: A0A6J1HLJ4 (uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464675 PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 4.2e-58 Identity = 115/134 (85.82%), Postives = 118/134 (88.06%), Query Frame = 0
BLAST of Tan0013088 vs. ExPASy TrEMBL
Match: A0A6J1I0C8 (uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 5.5e-58 Identity = 114/134 (85.07%), Postives = 118/134 (88.06%), Query Frame = 0
BLAST of Tan0013088 vs. ExPASy TrEMBL
Match: A0A5A7UD07 (RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00780 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 5.2e-56 Identity = 112/135 (82.96%), Postives = 117/135 (86.67%), Query Frame = 0
BLAST of Tan0013088 vs. ExPASy TrEMBL
Match: A0A1S3CGI5 (recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC103500657 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 5.2e-56 Identity = 112/135 (82.96%), Postives = 117/135 (86.67%), Query Frame = 0
BLAST of Tan0013088 vs. TAIR 10
Match: AT1G08390.1 (unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 182.2 bits (461), Expect = 2.8e-46 Identity = 84/136 (61.76%), Postives = 105/136 (77.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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