Tan0013057 (gene) Snake gourd v1

Overview
NameTan0013057
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationContig00127: 105622 .. 109990 (-)
RNA-Seq ExpressionTan0013057
SyntenyTan0013057
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAAACACAGCCCTTTCAGTTGCTCTCTACACGGTGACTGTCCTTTTGGGTGTTACCTTATCATATATTTGCCGTAGAGGTTCATTTTCCTCACTCAGGAAACGAGAAAGGGAGGAGGGCCCTGAATTTGAGCCCGATTCCAAGCGAGCGAAATTGGATGACGAAACAACATCGTCATCTAATCTAATTGCTCCTGAACTCGTCCCTGAGCCTGAGGCCCCCCTTGTGATAGATGGGAAAAAAGAAAGAAGGTTTCCGTTTCATTCAACCAACTATCTTTTTGAAGCAGATAGTTCACAGTGCTCATTCTATAGATACTGGAAAAGCCAAAGAGAATGAAATTTCAGATTAGTCAATTGAAATTGAAGAACCACATCCCGACCCAGCCACAAATCCCGAACTTTTTGGCTGAAGTCGACCTGCCACAGGCGCATCCGATGGATTCCGCGGATACTTTGCGCTTAAAGGCTGATATCATTCTGGAGTCGTATTTGGATTCCCTTACTCGTGAGCGATACACCTGGTTAGACGTAACACAAAGTCTTGCTCAAAGGGTCAGCTCCGGGGATATAGTAACTCGAGATGATATCAGTATGCTGCTCGACCAGTTGCATAATCCGGGCAGTGAAAACGGTATGAAAGCCTTGGAGCTCTTAATGTCATAAGTGGCAGGATAGGGGAGGGGGGGGGTCAAATTGCTTCGAGAAAGAGAAAGATAGGAAAGATGCCAAGTCAAGCCATGTACTACTATCGGCCATACAATGATGGCATTGTGGATCTCATTCGTATTCCAGTTTTTTGGACAGAGTTAGATGTGGCCTTTCATTCCTTAGGGAGTGAGAGGGCTAAGGGGAAAGGGTTGGTTGCCCCTTACGCGCTTTTTTAGGAGGAGTTCAGTGTAGTCGGATGGAAGGGAAGCGCATATCGGAAACGAATCGGGCATCTATGGAAAGAATAAACCTTCTGCGTTGTCTAGTAAGCTGCCATTTTCATATATTGAAGAATAAAATCGACAAATTGAATAGGGAATCACTTGGGGTCTGAATAAGATCAGCAGGAAACACAATGGATAGGGCTTCTCAAACAGAGGCAGTGTTGCAGAAAAAAGAGCTTTTGTCTTCTTCAGTTAGTACAAATTCGGTCGATATCGACAATCCAGTTCCGCAGGAAGGAGGCCAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGGGATGCTACTCACGAGCTGGTCAGGGACAGGTTCCGGTCACTCTTTCGATGCCATGCCATTGTGGTGGCACGGGAACCACTGAATGGGGGCGGTTTTCATCTCATCGCTGGCGTGTGGAATACAAGTGCATCCAAGCACAGCGCAGCCAAGAGGGTCCAAGATTGCTTCGTCGAATGGGCTGGCCTTTTAGAGAGCAGTAGAATGTTGGGTTAGCTCTGCCTTGTTGTGATAGGGGGGTGAGAGGAACTGCTCAGAAATGTCTTAGTTGGTTGAGGGGTGACCGATCCGGTCAGTCAAAAAATAGGATAACAAAAAAAGGTGTATCTGGTCTGGTGTAGCTAATGTGACTTTCTTGATCTATAGTTCCTCTTCTTTCTCTCTCTTGACCAATGCTCCGGCTTCCCTCACTCAAAAGATCCGCCATTGTGACACAGGTGTATCGAGGTAGGCCGTAGATTGAATATAGAAAGAAGGGCTCGTATTTGACAGATTTCGAGCAACCCCCAACCTTCGAGAAGGCCACTCCTCTCTCTTCCGGCTTGTTGTGACCTGACCACTTTCATGCTTCGAATGAGAAGTTGCGCTTTCGATCTTGTTCTCAGCTCCGGGTCTGGTCCTTTAGGCGAGGCTCTTTACTTTACAGGGTGGTTCCCTTTATGGTTCAGGAATTCGTGGTTGGCTGACTTTTGTTTCTTTGGTTACAGTTCATGCCCACTCGTCATGAACCCCCGCCCGCCCCGACGTGGAGTCGCAACTCTTCCTGTAGAAACCTCCTTCAACTGATTCAAGTGATTCAGTCAGTAGGAAAGTAAGATGCCTCTCCTGCAGGCCGAAACATTTCTTTTGTCTCGATGCGGTTCTCCCCAAAAGAGTGAGCGCTCACTCTTATTATGGGGCCCACCCCCTTTTTTCTTATTAGTAAGATAGGTTGCGAAATCTCACCTTTTGGAAATCTCAAATAAGGGGAAGTGGGAGTATAGGTTTTTTTGAAGATCTCTCCCTTCTCCATTATTCTAATCATTGAATTAGGTAGGACACTCGCCCTACTTGTAAGTCTCGATAGAAAAGGTGGGAGAGGGTTTCACTATCTCTTTTCTTTCAGAGTCTACTTGACTTCTTTTTTTTTCTTTATGCTGAAAGACCAGTAAGTGGTTTTGGCATATCTTATGCAATCGATTGATTCTATCAGGTCTATTCTTCGGTAGTGCATAGGCTCCGGCTTCTTCCTCTAGCCGAGCCACTACTTGCGTGTGTGTAATTCATAGCAGTTTTTTTATTATGGAGCTATTGGATTTTCTTATAGTAGAGAGCGGTAAGTTAGTGCTGTTCTAAGGAAGTGGTAGCTGTTCCAGTACACAAACAAGGTGGGTTGGGGGAGGTATTTTGAGCGCATACTTTTTGCTTTAATAGAGAAAGGGCTTGGCATTTCACTCTTTGTTGTGGGGTTGTCACGGATTGGCCGGCCATACGGATAAGGAAGTCCAAGGAGTTTTTTCTTTGTGGAGGTTTCACATCACATTAGTCATTCCATTCCTTCCGGATAACCTAAAACGTGTAGGCCTACCGAGAGGGTACTTTCTGATTTGAAAAAAGGGTTCTATTACGATGTATACGATGGGATATAAAAGAAGAAGAAAACAGGTTCTTCTCTTGAGCCTATTTTCTTTCATTGATCTTGCCACTTAGAACTGGTAGGTAGGTCTGTCTTTCTCTGGATCCCGCTGAGCTGAAAGACATCAGACATACATAAAAAATCGTTTAGATCCGGACCGGGCTCTCGAAAGCTCATGTGCCGTAGGTGGGAAGATATGGGCTGGAAAAGCATGTTAATAATCACCGCTGGCCCTTATGCCCCGAATGCTCAGCTAAAATGTCAAACGAAAAGTCATAACTAACAGAATAGGAGCACTCACGAAACCTTGGATGGTCGTCAGGTATCAAAATCCGGAATTAATCGAACTGGAGGGAGCAGAGCTTACTGCTAGTAGAACAAAAGCCAGGAAAGGGGGTTGGCTGATGATGGATATTCGGGGGACCCATGGTTTACGTGTTTAAACTCCGATCGTATAGTTGGGTCTCTGCCTACTCTACGAATTCACATAAAAGGAAGACCTGACTAAGCAAGTTTCTGGGTTATTGAAAACCAGGAGACAGAACCGAAGTCGAGGAAGGAGAATCATATGAGTCCTCCTTAATTCACAAAGCCTAAAGTTGACGTTTTAATATCGATTTTATGAAAAAAGAAATCGAAAGCCGAGCAATCAGTTAAGCTCTTTCTGTATCTACGGAATCATTAGAACCGCAGGCCCGGCCTGCTGACCCTAAAGACACGAGCTCAACCATTTGAAAAGTAGGAGCAGCTGAGCATATGCTAGAATTAGAATCACGCGTAATGAAGCGCTTGTCTTACTTATCTAAAACATACAAAAACCCTGCTACAAATGAGCGGCATATGAACGGAACGAGACCCTTCGAAAGACGAGACTCAGATCGGGGATCAAAAAGCCCTTTCTTTACGTACTATTCATTTGATGATTTGGAAGATTTTTGATATTCTGCAGGTGCAGATTTGGCGTCGGCCTAGGCTTCTTTATACGTTGGATTTGGTACGAGAGCCTATGCTTTAGGAACAGGCTCAGGCCCCATAGCTTAAGGTGGATCGGATCCTACATACTTTTCACACAGACAGACGCAAAATTGGAAAACAAATCATCAACTTCAACTGCTTCATGCCCCGGATCACGGGTATTCTTATTGTAGTTATAGACCCCACATTGGCTTGGCTACAGGAATCATTTATTCCCCTCTATTCTAGCTTCAGATTTGGCTTAAGCTTCGGATTCTTAAGATTAGGGGGAAACAGGAGCTTTTGGTTTGGATGCTTCGGTGGGTTCGGATGAAACAGAAAAATCTTACTCCTCAGTGGATGATTCGGCATCCTCGGGTGCTTATGTGTATGCTTTTTCTGTTTAGGAAATGCAAATGGAATCCTATTTCTATGCCTTCCGAAACTCGGTTTTAGGCTTTAACCTTCCCCTTAGGACCAAGCAAGGGCTGACATTAGCGAATGCTCATAACGTCCTTGCTTTCTCGATATCAGTAATTAAGGATCTCTCCTCCTTCTGGTAG

mRNA sequence

ATGGAGGAAAACACAGCCCTTTCAGTTGCTCTCTACACGGTGACTGTCCTTTTGGGTGTTACCTTATCATATATTTGCCGTAGAGGTTCATTTTCCTCACTCAGGAAACGAGAAAGGGAGGAGGGCCCTGAATTTGAGCCCGATTCCAAGCGAGCGAAATTGGATGACGAAACAACATCGTCATCTAATCTAATTGCTCCTGAACTCGTCCCTGAGCCTGAGGCCCCCCTTATACTGGAAAAGCCAAAGAGAATGAAATTTCAGATTAGTCAATTGAAATTGAAGAACCACATCCCGACCCAGCCACAAATCCCGAACTTTTTGGCTGAAGTCGACCTGCCACAGGCGCATCCGATGGATTCCGCGGATACTTTGCGCTTAAAGGCTGATATCATTCTGGAGTCGTATTTGGATTCCCTTACTCGTGAGCGATACACCTGGTTAGACGTAACACAAAGTCTTGCTCAAAGGGTCAGCTCCGGGGATATAGTAACTCGAGATGATATCAGTATGCTGCTCGACCAGTTGCATAATCCGGGCAGTGAAAACGGAGGAGTTCAGTGTAGTCGGATGGAAGGGAAGCGCATATCGGAAACGAATCGGGCATCTATGGAAAGAATAAACCTTCTGCGTTGTCTAGAAATGCAAATGGAATCCTATTTCTATGCCTTCCGAAACTCGGTTTTAGGCTTTAACCTTCCCCTTAGGACCAAGCAAGGGCTGACATTAGCGAATGCTCATAACGTCCTTGCTTTCTCGATATCAGTAATTAAGGATCTCTCCTCCTTCTGGTAG

Coding sequence (CDS)

ATGGAGGAAAACACAGCCCTTTCAGTTGCTCTCTACACGGTGACTGTCCTTTTGGGTGTTACCTTATCATATATTTGCCGTAGAGGTTCATTTTCCTCACTCAGGAAACGAGAAAGGGAGGAGGGCCCTGAATTTGAGCCCGATTCCAAGCGAGCGAAATTGGATGACGAAACAACATCGTCATCTAATCTAATTGCTCCTGAACTCGTCCCTGAGCCTGAGGCCCCCCTTATACTGGAAAAGCCAAAGAGAATGAAATTTCAGATTAGTCAATTGAAATTGAAGAACCACATCCCGACCCAGCCACAAATCCCGAACTTTTTGGCTGAAGTCGACCTGCCACAGGCGCATCCGATGGATTCCGCGGATACTTTGCGCTTAAAGGCTGATATCATTCTGGAGTCGTATTTGGATTCCCTTACTCGTGAGCGATACACCTGGTTAGACGTAACACAAAGTCTTGCTCAAAGGGTCAGCTCCGGGGATATAGTAACTCGAGATGATATCAGTATGCTGCTCGACCAGTTGCATAATCCGGGCAGTGAAAACGGAGGAGTTCAGTGTAGTCGGATGGAAGGGAAGCGCATATCGGAAACGAATCGGGCATCTATGGAAAGAATAAACCTTCTGCGTTGTCTAGAAATGCAAATGGAATCCTATTTCTATGCCTTCCGAAACTCGGTTTTAGGCTTTAACCTTCCCCTTAGGACCAAGCAAGGGCTGACATTAGCGAATGCTCATAACGTCCTTGCTTTCTCGATATCAGTAATTAAGGATCTCTCCTCCTTCTGGTAG

Protein sequence

MEENTALSVALYTVTVLLGVTLSYICRRGSFSSLRKREREEGPEFEPDSKRAKLDDETTSSSNLIAPELVPEPEAPLILEKPKRMKFQISQLKLKNHIPTQPQIPNFLAEVDLPQAHPMDSADTLRLKADIILESYLDSLTRERYTWLDVTQSLAQRVSSGDIVTRDDISMLLDQLHNPGSENGGVQCSRMEGKRISETNRASMERINLLRCLEMQMESYFYAFRNSVLGFNLPLRTKQGLTLANAHNVLAFSISVIKDLSSFW
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
RXH88095.15.5e-3284.62hypothetical protein DVH24_042166 [Malus domestica][more]
KAF3973007.11.5e-2146.79hypothetical protein CMV_003551 [Castanea mollissima][more]
RXH92256.12.2e-2077.78hypothetical protein DVH24_033152 [Malus domestica][more]
KAF3773510.12.7e-1074.55hypothetical protein EJ110_NYTH47861 [Nymphaea thermarum][more]
XP_020208959.11.4e-0640.70uncharacterized protein LOC109793905 [Cajanus cajan] >KYP78438.1 hypothetical pr... [more]
Match NameE-valueIdentityDescription
A0A498J0D72.7e-3284.62Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_042166 PE=4 SV=1[more]
A0A498JAU71.1e-2077.78Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_033152 PE=3 SV=1[more]
A0A5K1CTB08.1e-1380.00Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS17... [more]
A0A2P2MW321.7e-0743.16Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A151UGR66.6e-0740.70Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_048241 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0013057.1Tan0013057.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome