Tan0012938 (gene) Snake gourd v1

Overview


Name	Tan0012938
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribosomal protein L34
Location	LG04: 87319256 .. 87321883 (-)
RNA-Seq Expression	Tan0012938
Synteny	Tan0012938

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCAGACTTCTGATTCGGACGGGAAATTCTTTGATCAATCGGTTGCGACTAAATTCCACGCATCAGAATAACAGGATTTGGAATCCCCAAACTCTGTCCCTTGGCCATGGCGCTGAAGTCACTCCGATGCTATTTCCTTCAGTCTCTAATCACCAGACAGCTCACAATTTGCAGCAGAATGACACCGAGTCGTTGAGGAAGCTCGAATCGGAAGGCATCTCCTTCCCTTTTGGTCTTCCGTCGCTTCGGTTCTTCTTGCCCGACGGTATGCTGTTCTTTTTCCTGCTCTGCTTGAACTGATCTTCTGAGTTATCTTCTGAGTTTAAAAGTAGCTTGTTGGAATTAGAAAATTGAGGACGAAATGTGTAGAAGGTTTATTTAATTTGAAAATTGCTTTGCTATATGATAGTGGCTTGGACTTAAGTTCTTACTAGAGATTAGAGAAAATGAAGCATGGATGATAATTTGATTTTTTTTTTTCATTGAACATTTGTTATGCTCGCATTTGATTGGGTGGATGATCTAATCCTGTCTCGTTATTCCCTTTTCATGAATACTAGGCAACTTTTTTTTTTTTGTTTTTTACTGTGTATTTAGATGATGTACCCTGTTTTCACATGTTTACACCTTATATTGTTTGCGGTGGCACTCATTATCAAAGAACATTTGCAGATGGTATATTGACGAAATGAAGTCTTAGGTCAAAAGTTTACAATGGTCTATGGTGATAGACTTGAAGTACAGAAATAATGCTATGGTGTGGCATCAAGGGTCTGTGTTCCAAACATATATGTGTCTGGTTGTGAGGTGTGAAGTGCAGATGCTGACTCCATCCATGATTAAGCAACCGAAAAAACATTGCTTTTTTATACTGCATTTTGTTGTGGTAGTTTCTAATTTCAATTAACTGGTCTTATGTAATCGTAAGTTTGAAGTCTAAGTGAAAGTGGGATTATCAAGAGAAAATTTAGGGTGCTAAGACTATCAGCCAATCACTCAAGCATCAGGGATGACTTCTCAATTAGTCTCGAGAACCCTGTTGGCAGTGAAGATACTTGCCTACCATTATCTGGTACCCATCACTGTGATAAGGTGGAGGGGTGTCATATTCTGTGAGGGACTTCGACTTTGGTTCTGGAAAATATCGTCTGAACTATGCTTGTCAGTTGAAAATATGATATTGCAGTTGGATTTCCCATATTTCTGGTTTTTCTTTTCTTTTTTTTCTTTTCTCTTTTGGGTTTTGAATGGAGGGATTAGCACCATCCATTCTATCGAGAGCGCCTCGTCCATGTTGTTGGGCTTTAAGTGGGGTGTTCTGTGCAAATATTGCAGTTGGGGCTCTTTTTGTGGAGCTCTTTTTTGGAGAACTTTGGTGCTTCCTCAGCTGAAATAGTTATTGTCATTCGATGGTTGAAGAGGCATTGGTTCCATCTTCTGTACAGAACAAAGTGAGCAGCTTTGTGGAAAATGCCCTTTCTTGCACATTTGTGGAATATCTAACCTGAGAGAAATTAGAGGATCTTTATCCACACTTTGAGGGCAAGGTGCATTTTGTGGCAGATTAATGATAGGATTAGGGAGAGGGGTAATATGCTAATTAGGAGGGTGGTTTGTTGGGTGTTTCTTGGGGGATTCTGGCAACAAGAGAAGGTAGGCAATATTGTGATTGTTTAAGATTGAGTTAAAAGGAGAGGTCTTAAGTGTCAAAGCTCTCCTTTTTGGCCTTCTTGAAAGAAATCTCATTCTCCACGGTGTTCACTGCAAGTTGAGCTTGAGCATCCTGAATAAATAAAAATTCGTTTAAGTAGTTAGTAAATATTTTGACCTTCCTGTGGCTAGTTAAGTTGTCCGAGTTATGATCTATGGATTCCCTTCACTAAATAAAGCTTTGTACATAACAATTTGCTGGGCTCAGATGATTATTTTACCTGTCATTACTTCTTGTATTATTATTTTTATAAAATTAAGGCACTAATTTTTTTTCCTTTCCCCAGGAGATGCTTCTTCGACTGAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCACCATCAGGCGGAAGAGGAATCATGGATTTTTTGCCCGGTATCTCTCCATTGCCTTTTGTATATTTTTTATATGTAATGTTTTCTCAAAGGAGAATTTATGGTCTGCGAACAATGTTATTTTTCTTAAAAATTCCCAGTAGAGCTTTATGGTTAAGTTGTTAGAAACAGGAATCTTAGCCATTCCTGCAATTAGGTTGGCATGATCAGCTAAAATTAACTGCCCTCGCCTCAACCATGCTCACTTGAGGTTGCGTCTGGGCTCACAGGAAAACAAATAGCATCCTATGTTGCCCAGCTTCCATAATACTTGACTAGCTTATCTGCATTGATTTGGGCCCTTGGAGTTAGAAAAAAAAAAACCAGCCTACGTAAATTAGTTTGGTTGGCTAGATTAGCTTAGAAGGAAAGGGTAGTTTGTAATGTCATATCAAAGTGCAACAAATCATTTCAAAATGTGAATTAAAAAACCACATTTTCTTCTTTGAGCAGCAAAGCAACCAAGGGTGGGCGGAAAGTTATTGCTCGAAGGATTGCAAAGGGCCGATCAAGAATAACTGCATAA

mRNA sequence

ATGGCGTCCAGACTTCTGATTCGGACGGGAAATTCTTTGATCAATCGGTTGCGACTAAATTCCACGCATCAGAATAACAGGATTTGGAATCCCCAAACTCTGTCCCTTGGCCATGGCGCTGAAGTCACTCCGATGCTATTTCCTTCAGTCTCTAATCACCAGACAGCTCACAATTTGCAGCAGAATGACACCGAGTCGTTGAGGAAGCTCGAATCGGAAGGCATCTCCTTCCCTTTTGGTCTTCCGTCGCTTCGGTTCTTCTTGCCCGACGGTATGCTGGTCTGTGTTCCAAACATATATGTGTCTGGTTGTGAGGAGATGCTTCTTCGACTGAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCACCATCAGGCGGAAGAGGAATCATGGATTTTTTGCCCGGTATCTCTCCATTAATTTATGGTCTGCGAACAATGTTATTTTTCTTAAAAATTCCCAGTAGAGCTTTATGCAAAGCAACCAAGGGTGGGCGGAAAGTTATTGCTCGAAGGATTGCAAAGGGCCGATCAAGAATAACTGCATAA

Coding sequence (CDS)

ATGGCGTCCAGACTTCTGATTCGGACGGGAAATTCTTTGATCAATCGGTTGCGACTAAATTCCACGCATCAGAATAACAGGATTTGGAATCCCCAAACTCTGTCCCTTGGCCATGGCGCTGAAGTCACTCCGATGCTATTTCCTTCAGTCTCTAATCACCAGACAGCTCACAATTTGCAGCAGAATGACACCGAGTCGTTGAGGAAGCTCGAATCGGAAGGCATCTCCTTCCCTTTTGGTCTTCCGTCGCTTCGGTTCTTCTTGCCCGACGGTATGCTGGTCTGTGTTCCAAACATATATGTGTCTGGTTGTGAGGAGATGCTTCTTCGACTGAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCACCATCAGGCGGAAGAGGAATCATGGATTTTTTGCCCGGTATCTCTCCATTAATTTATGGTCTGCGAACAATGTTATTTTTCTTAAAAATTCCCAGTAGAGCTTTATGCAAAGCAACCAAGGGTGGGCGGAAAGTTATTGCTCGAAGGATTGCAAAGGGCCGATCAAGAATAACTGCATAA

Protein sequence

MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQQNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLKGLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGRSRITA

Homology

[Close]

BLAST of Tan0012938 vs. NCBI nr
Match: XP_022997833.1 (uncharacterized protein LOC111492674 [Cucurbita maxima])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 116/185 (62.70%), Postives = 123/185 (66.49%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS LL+RTGNSLINRLRLNSTHQ +RIW PQTLS GHGAEVTPMLFPS+S HQTA +LQ
Sbjct: 1   MASTLLVRTGNSLINRLRLNSTHQTSRIWYPQTLSHGHGAEVTPMLFPSLSKHQTAQHLQ 60

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTE++RKLESEGI FPFGLPSLRFFLPDG        Y S  E MLL        F K
Sbjct: 61  QNDTETVRKLESEGIFFPFGLPSLRFFLPDG-------DYSSTQEPMLL--------FPK 120

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 121 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 147

Query: 181 SRITA 186
           SRITA
Sbjct: 181 SRITA 147

[Close]

BLAST of Tan0012938 vs. NCBI nr
Match: KAG6581832.1 (hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.0 bits (458), Expect = 9.2e-42
Identity = 113/185 (61.08%), Postives = 123/185 (66.49%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS+LLIRTGNSL+NRLRL+STHQNN IW+ Q+LS GHG +VTPMLFPSVS HQTAH+LQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTESLRKLESEGI FPFGLPSLRFFLPDG          S  +E +L        F K
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDG--------NTSSTQEPML-------LFPK 120

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 121 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 147

Query: 181 SRITA 186
           SRITA
Sbjct: 181 SRITA 147

[Close]

BLAST of Tan0012938 vs. NCBI nr
Match: XP_022955352.1 (uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata] >XP_022955353.1 uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-41
Identity = 113/185 (61.08%), Postives = 123/185 (66.49%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS+LLIRTGNSL+NRLRL+STHQNN IW+ Q+LS GHG +VTPMLFPSVS HQTAH+LQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTESLRKLESEGI FPFGLPSLRFFLPDG          S  +E +L        F K
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDG--------DTSSTQEPML-------LFPK 120

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 121 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 147

Query: 181 SRITA 186
           SRITA
Sbjct: 181 SRITA 147

[Close]

BLAST of Tan0012938 vs. NCBI nr
Match: XP_023526192.1 (uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023526193.1 uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.3 bits (451), Expect = 6.0e-41
Identity = 112/185 (60.54%), Postives = 122/185 (65.95%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS+LLIRTGNSL+NRLRL+STHQNN IW+ Q+LS GHG +VTPMLFPSVS HQ AH+LQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQPAHHLQ 60

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTESLRKLESEGI FPFGLPSLRFFLPDG          S  +E +L        F K
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDG--------DTSSTQEPML-------LFPK 120

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 121 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 147

Query: 181 SRITA 186
           SRITA
Sbjct: 181 SRITA 147

[Close]

BLAST of Tan0012938 vs. NCBI nr
Match: XP_023523687.1 (uncharacterized protein LOC111787851 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.9 bits (450), Expect = 7.8e-41
Identity = 114/185 (61.62%), Postives = 121/185 (65.41%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS LL+RTGNSLINRLRLNS HQ +RIW PQTLS GHGAEVTPMLFPS+S HQTA +LQ
Sbjct: 1   MASTLLVRTGNSLINRLRLNSAHQTSRIWCPQTLSHGHGAEVTPMLFPSLSKHQTAQHLQ 60

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTES+RKLESEGI FPFGLPSLRFFLPDG          S  E M+L        F K
Sbjct: 61  QNDTESVRKLESEGIFFPFGLPSLRFFLPDG-------DNSSTQEPMIL--------FPK 120

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 121 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 147

Query: 181 SRITA 186
           SRITA
Sbjct: 181 SRITA 147

[Close]

BLAST of Tan0012938 vs. ExPASy TrEMBL
Match: A0A6J1KF33 (uncharacterized protein LOC111492674 OS=Cucurbita maxima OX=3661 GN=LOC111492674 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 9.0e-43
Identity = 116/185 (62.70%), Postives = 123/185 (66.49%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS LL+RTGNSLINRLRLNSTHQ +RIW PQTLS GHGAEVTPMLFPS+S HQTA +LQ
Sbjct: 1   MASTLLVRTGNSLINRLRLNSTHQTSRIWYPQTLSHGHGAEVTPMLFPSLSKHQTAQHLQ 60

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTE++RKLESEGI FPFGLPSLRFFLPDG        Y S  E MLL        F K
Sbjct: 61  QNDTETVRKLESEGIFFPFGLPSLRFFLPDG-------DYSSTQEPMLL--------FPK 120

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 121 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 147

Query: 181 SRITA 186
           SRITA
Sbjct: 181 SRITA 147

[Close]

BLAST of Tan0012938 vs. ExPASy TrEMBL
Match: A0A6J1GTQ0 (uncharacterized protein LOC111457406 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457406 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.8e-42
Identity = 113/185 (61.08%), Postives = 123/185 (66.49%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS+LLIRTGNSL+NRLRL+STHQNN IW+ Q+LS GHG +VTPMLFPSVS HQTAH+LQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTESLRKLESEGI FPFGLPSLRFFLPDG          S  +E +L        F K
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDG--------DTSSTQEPML-------LFPK 120

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 121 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 147

Query: 181 SRITA 186
           SRITA
Sbjct: 181 SRITA 147

[Close]

BLAST of Tan0012938 vs. ExPASy TrEMBL
Match: A0A6J1IXD9 (uncharacterized protein LOC111480019 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480019 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 112/185 (60.54%), Postives = 122/185 (65.95%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS+LLIRTGNSL+NRLRL+ST QNN IW+ Q+LS GHG +VTPMLFPSVS HQTAH+LQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTLQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTESLRKLESEGI FPFGLPSLRFFLPDG          S  +E +L        F K
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDG--------DTSSTQEPML-------LFPK 120

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 121 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 147

Query: 181 SRITA 186
           SRITA
Sbjct: 181 SRITA 147

[Close]

BLAST of Tan0012938 vs. ExPASy TrEMBL
Match: A0A0A0LIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847215 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 111/185 (60.00%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS+LLIRTG+SL+NRLRL+S HQNNRIW  Q LS GHG EVTPMLFPSVS HQTAH LQ
Sbjct: 77  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQ 136

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTESLR+L+SEGI FPFGLPSLRFFLPDG          S  +E +L        F K
Sbjct: 137 QNDTESLRQLQSEGIFFPFGLPSLRFFLPDG--------DASSTQEPML-------LFPK 196

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 197 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 223

Query: 181 SRITA 186
           SRITA
Sbjct: 257 SRITA 223

[Close]

BLAST of Tan0012938 vs. ExPASy TrEMBL
Match: A0A6J1GBE4 (uncharacterized protein LOC111452439 OS=Cucurbita moschata OX=3662 GN=LOC111452439 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 114/185 (61.62%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTHQNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAHNLQ 60
           MAS LL+RTGNSLINRLRLNS HQ +RIW  QTLS GHGAEVTPMLFPS+S HQTA +LQ
Sbjct: 1   MASTLLVRTGNSLINRLRLNSAHQTSRIWYSQTLSHGHGAEVTPMLFPSLSKHQTAQHLQ 60

Query: 61  QNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSYFLK 120
           QNDTES+RKLESEGI FPFGLPSLRFFLPDG      N      E MLL        F K
Sbjct: 61  QNDTESVRKLESEGIFFPFGLPSLRFFLPDG-----DNSTTQ--EPMLL--------FPK 120

Query: 121 GLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGR 180
             F   PS               I   R   FF +       KATKGGRKVIARRIAKGR
Sbjct: 121 RTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRKVIARRIAKGR 147

Query: 181 SRITA 186
           SRITA
Sbjct: 181 SRITA 147

[Close]

BLAST of Tan0012938 vs. TAIR 10
Match: AT3G13882.1 (Ribosomal protein L34 )

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-16
Identity = 74/188 (39.36%), Postives = 93/188 (49.47%), Query Frame = 0


Query: 1   MASRLLIRTGNSLINRLRLNSTH---QNNRIWNPQTLSLGHGAEVTPMLFPSVSNHQTAH 60
           MA++ LIR+G SL+NR     T    QNN   + Q ++   G E+ P  FPS+SN Q++ 
Sbjct: 1   MAAKTLIRSGASLMNRFLTKPTTNIVQNNLRSSFQYIA-PQGQEIPPYFFPSLSNLQSSL 60

Query: 61  NLQQNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPNIYVSGCEEMLLRLKNQCSY 120
             + NDT SL++L   G  +P GLPSL FFLP+          V    E LL        
Sbjct: 61  ISRPNDTASLQELNERGFLYPSGLPSLEFFLPE----------VDPSSEPLL-------L 120

Query: 121 FLKGLFNLAPSGGRGIMDFLPGISPLIYGLRTMLFFLKIPSRALCKATKGGRKVIARRIA 180
           F K  F   PS               I   R   FF +       KATKGGR+VIARRIA
Sbjct: 121 FPKRTFQ--PS--------------TIRRKRNHGFFAR-------KATKGGRRVIARRIA 147

Query: 181 KGRSRITA 186
           KGR R+TA
Sbjct: 181 KGRHRVTA 147

[Close]

BLAST of Tan0012938 vs. TAIR 10
Match: AT3G13882.2 (Ribosomal protein L34 )

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-14
Identity = 58/161 (36.02%), Postives = 81/161 (50.31%), Query Frame = 0


Query: 39  GAEVTPMLFPSVSNHQTAHNLQQNDTESLRKLESEGISFPFGLPSLRFFLPDGMLVCVPN 98
           G E+ P  FPS+SN Q++   + NDT SL++L   G  +P GLPSL FFLP+   +   +
Sbjct: 48  GQEIPPYFFPSLSNLQSSLISRPNDTASLQELNERGFLYPSGLPSLEFFLPEVYAMQSLD 107

Query: 99  ------IYVSGCEEMLLRLK---NQCSYFLKGLF---NLAPSGGRGIMDFLPGI--SPLI 158
                 +Y S    +L+  K       ++L  +F   N+       ++ F         I
Sbjct: 108 ARESSALYCSLALRLLVSAKLYIFAARWYLSNVFVFGNVVDPSSEPLLLFPKRTFQPSTI 167

Query: 159 YGLRTMLFFLKIPSRALCKATKGGRKVIARRIAKGRSRITA 186
              R   FF +       KATKGGR+VIARRIAKGR R+TA
Sbjct: 168 RRKRNHGFFAR-------KATKGGRRVIARRIAKGRHRVTA 201

The following BLAST results are available for this feature:

BLAST of Tan0012938 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012938 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997833.1	1.9e-42	62.70	uncharacterized protein LOC111492674 [Cucurbita maxima]	[more]
KAG6581832.1	9.2e-42	61.08	hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022955352.1	1.2e-41	61.08	uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata] >XP_0229553...	[more]
XP_023526192.1	6.0e-41	60.54	uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_023523687.1	7.8e-41	61.62	uncharacterized protein LOC111787851 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0012938 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KF33	9.0e-43	62.70	uncharacterized protein LOC111492674 OS=Cucurbita maxima OX=3661 GN=LOC111492674...	[more]
A0A6J1GTQ0	5.8e-42	61.08	uncharacterized protein LOC111457406 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IXD9	1.1e-40	60.54	uncharacterized protein LOC111480019 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LIB6	1.4e-40	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847215 PE=3 SV=1	[more]
A0A6J1GBE4	2.4e-40	61.62	uncharacterized protein LOC111452439 OS=Cucurbita moschata OX=3662 GN=LOC1114524...	[more]

BLAST of Tan0012938 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13882.1	1.9e-16	39.36	Ribosomal protein L34	[more]
AT3G13882.2	8.6e-14	36.02	Ribosomal protein L34	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.3980		coord: 163..185 e-value: 1.4E-5 score: 26.8
None	No IPR available	PANTHER	PTHR14503:SF8	RIBOSOMAL PROTEIN L34	coord: 1..185
IPR000271	Ribosomal protein L34	PFAM	PF00468	Ribosomal_L34	coord: 164..185 e-value: 1.2E-5 score: 25.2
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER	coord: 1..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012938.1	Tan0012938.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome