Tan0012926 (gene) Snake gourd v1

Overview
NameTan0012926
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG09: 69112486 .. 69112971 (-)
RNA-Seq ExpressionTan0012926
SyntenyTan0012926
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCCTCACATTTTATTTTCTTTTGCCTTCTCTTTACTGCCTTCTTCTATCTTCTTTCAGTGGATCGTTTTCATTCTCCTCCTCAACTTTTCGCCGCTGAAGGAAGACCTGCAAGAAAGTACCTTGGTACATCATTTTCCAATCCCGAATCTGAATACCACAGAGTCAAGGTATGCTAAACAATAAGTAGCTTTTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTGAGTCCTTCAAGTAACTTTTGCCAATGGATTCCACCACCCTTACCATGTACCTTCTGATATTCCCTTAGTTGTGAATATGAATATTCCAAAATGCAGGTTCACGAAGAAGAGTTCAATAGACCGTCTGCAGAAGAAATTTCCTTCAACACAGCTGAATATGAAGCAAGTATCGACAGTGTGGGTGAACTTGTCTACCACACTGACTATCATGGGGTGACAACGCATCCGAACCCAACACCCAAACATCCATAG

mRNA sequence

ATGAGATCCTCACATTTTATTTTCTTTTGCCTTCTCTTTACTGCCTTCTTCTATCTTCTTTCAGTGGATCGTTTTCATTCTCCTCCTCAACTTTTCGCCGCTGAAGGAAGACCTGCAAGAAAGTACCTTGGTACATCATTTTCCAATCCCGAATCTGAATACCACAGAGTCAAGGTTCACGAAGAAGAGTTCAATAGACCGTCTGCAGAAGAAATTTCCTTCAACACAGCTGAATATGAAGCAAGTATCGACAGTGTGGGTGAACTTGTCTACCACACTGACTATCATGGGGTGACAACGCATCCGAACCCAACACCCAAACATCCATAG

Coding sequence (CDS)

ATGAGATCCTCACATTTTATTTTCTTTTGCCTTCTCTTTACTGCCTTCTTCTATCTTCTTTCAGTGGATCGTTTTCATTCTCCTCCTCAACTTTTCGCCGCTGAAGGAAGACCTGCAAGAAAGTACCTTGGTACATCATTTTCCAATCCCGAATCTGAATACCACAGAGTCAAGGTTCACGAAGAAGAGTTCAATAGACCGTCTGCAGAAGAAATTTCCTTCAACACAGCTGAATATGAAGCAAGTATCGACAGTGTGGGTGAACTTGTCTACCACACTGACTATCATGGGGTGACAACGCATCCGAACCCAACACCCAAACATCCATAG

Protein sequence

MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVHEEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP
Homology
[Close]
BLAST of Tan0012926 vs. NCBI nr
Match: KAG6589671.1 (hypothetical protein SDJN03_15094, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-34
Identity = 81/109 (74.31%), Postives = 90/109 (82.57%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVH 60
           M SSHF+FF LLF   FYLLSV R  SPP    + GRPARKYLG+SFSNPESE+ +VKVH
Sbjct: 1   MGSSHFLFFFLLFN-LFYLLSVHRLQSPP---PSTGRPARKYLGSSFSNPESEFLKVKVH 60

Query: 61  EEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           E+EFNRPSA++IS N  EYEASID +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  EDEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Tan0012926 vs. NCBI nr
Match: KGN65505.1 (hypothetical protein Csa_019778 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVH 60
           MRSSHFIFFCLLFT FFYL S+D  HSPP LF +EGR ARKYLGTSFS+        +VH
Sbjct: 1   MRSSHFIFFCLLFT-FFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVH 60

Query: 61  EEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           E+EFNRPS ++ S NT EYEASI+S+GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  EDEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

[Close]
BLAST of Tan0012926 vs. NCBI nr
Match: XP_022921360.1 (uncharacterized protein LOC111429652 [Cucurbita moschata] >KAG7023353.1 hypothetical protein SDJN02_14378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-34
Identity = 80/109 (73.39%), Postives = 90/109 (82.57%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVH 60
           M SSHF+FF LLF   FYLLSV R  SPP    + GRPARKYLG+SFSNPESE+ +V+VH
Sbjct: 1   MGSSHFLFFFLLFN-LFYLLSVHRLQSPP---PSTGRPARKYLGSSFSNPESEFLKVEVH 60

Query: 61  EEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           E+EFNRPSA++IS N  EYEASID +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  EDEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Tan0012926 vs. NCBI nr
Match: XP_023515382.1 (uncharacterized protein LOC111779554 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-33
Identity = 79/109 (72.48%), Postives = 89/109 (81.65%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVH 60
           M SSHF+FF LLF   FYLLSV R  SPP      GRPARKYLG+SFSNPESE+ +V+VH
Sbjct: 1   MGSSHFLFFFLLFN-LFYLLSVHRLQSPPPY---TGRPARKYLGSSFSNPESEFLKVEVH 60

Query: 61  EEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           ++EFNRPSA++IS N  EYEASID +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  KDEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Tan0012926 vs. NCBI nr
Match: XP_022987350.1 (uncharacterized protein LOC111484929 [Cucurbita maxima])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 78/109 (71.56%), Postives = 88/109 (80.73%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVH 60
           M SSHF+FF LLF   FYLLSV R  SPP    + GRPARKYLG+ FSNPESE+ +V+VH
Sbjct: 1   MGSSHFLFFFLLFN-LFYLLSVHRLQSPP---LSTGRPARKYLGSLFSNPESEFLKVEVH 60

Query: 61  EEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           E+E NRPSA++IS N  EYEASID +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  EDELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Tan0012926 vs. ExPASy TrEMBL
Match: A0A0A0LUD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427550 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.0e-35
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVH 60
           MRSSHFIFFCLLFT FFYL S+D  HSPP LF +EGR ARKYLGTSFS+        +VH
Sbjct: 1   MRSSHFIFFCLLFT-FFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVH 60

Query: 61  EEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           E+EFNRPS ++ S NT EYEASI+S+GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  EDEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

[Close]
BLAST of Tan0012926 vs. ExPASy TrEMBL
Match: A0A6J1E5F1 (uncharacterized protein LOC111429652 OS=Cucurbita moschata OX=3662 GN=LOC111429652 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 80/109 (73.39%), Postives = 90/109 (82.57%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVH 60
           M SSHF+FF LLF   FYLLSV R  SPP    + GRPARKYLG+SFSNPESE+ +V+VH
Sbjct: 1   MGSSHFLFFFLLFN-LFYLLSVHRLQSPP---PSTGRPARKYLGSSFSNPESEFLKVEVH 60

Query: 61  EEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           E+EFNRPSA++IS N  EYEASID +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  EDEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Tan0012926 vs. ExPASy TrEMBL
Match: A0A6J1JGL7 (uncharacterized protein LOC111484929 OS=Cucurbita maxima OX=3661 GN=LOC111484929 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 78/109 (71.56%), Postives = 88/109 (80.73%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVH 60
           M SSHF+FF LLF   FYLLSV R  SPP    + GRPARKYLG+ FSNPESE+ +V+VH
Sbjct: 1   MGSSHFLFFFLLFN-LFYLLSVHRLQSPP---LSTGRPARKYLGSLFSNPESEFLKVEVH 60

Query: 61  EEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           E+E NRPSA++IS N  EYEASID +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  EDELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Tan0012926 vs. ExPASy TrEMBL
Match: A0A5D3DYI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002010 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 66/89 (74.16%), Postives = 79/89 (88.76%), Query Frame = 0 

Query: 22  VDRFHSPPQLFAAEGRPARKYLGTSFSN-PESEYHRVKVHEEEFNRPSAEEISFNTAEYE 81
           +D  HSPP+LF +EGRPARKYLGTSFSN P+SEYH  +VHE+EFNRPS +++S NT E+E
Sbjct: 1   MDLLHSPPRLFTSEGRPARKYLGTSFSNYPKSEYH--EVHEDEFNRPSPKDMSSNTPEHE 60

Query: 82  ASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           ASI+S+GEL+YH DYHGVTTHPNPTPKHP
Sbjct: 61  ASINSLGELIYHIDYHGVTTHPNPTPKHP 87

[Close]
BLAST of Tan0012926 vs. ExPASy TrEMBL
Match: A0A2P5B1U7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_335130 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.8e-12
Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTAFFYLLSVDRFHSPPQLFAAEGRPARKYLGTSFSNPESEYHRVKVH 60
           MR+   IFFCLL TA  YL S    +S   +F    R + + LG S      E+  +KV 
Sbjct: 1   MRALAIIFFCLL-TALLYLSSQSSTYSSSLVFLPRTRQSMRKLGMSSPIRVDEHRNIKVT 60

Query: 61  EEEFNRPSAEEISFNTAEYEASIDSVGELVYHTDYHGVTTHPNPTPKHP 110
           E++    + EE S  T ++E+S D++ E+VYHTDYHG TTHP PTPKHP
Sbjct: 61  EKDSKISTLEENSM-TIKHESSDDNMEEVVYHTDYHGATTHPTPTPKHP 107

The following BLAST results are available for this feature:
BLAST of Tan0012926 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0012926 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589671.11.4e-3474.31hypothetical protein SDJN03_15094, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN65505.11.9e-3473.39hypothetical protein Csa_019778 [Cucumis sativus][more]
XP_022921360.14.2e-3473.39uncharacterized protein LOC111429652 [Cucurbita moschata] >KAG7023353.1 hypothet... [more]
XP_023515382.12.1e-3372.48uncharacterized protein LOC111779554 [Cucurbita pepo subsp. pepo][more]
XP_022987350.11.0e-3271.56uncharacterized protein LOC111484929 [Cucurbita maxima][more]
BLAST of Tan0012926 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUD69.0e-3573.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427550 PE=4 SV=1[more]
A0A6J1E5F12.0e-3473.39uncharacterized protein LOC111429652 OS=Cucurbita moschata OX=3662 GN=LOC1114296... [more]
A0A6J1JGL75.0e-3371.56uncharacterized protein LOC111484929 OS=Cucurbita maxima OX=3661 GN=LOC111484929... [more]
A0A5D3DYI51.1e-2974.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2P5B1U74.8e-1244.95Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_335130 PE=4 SV... [more]
BLAST of Tan0012926 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012926.1Tan0012926.1mRNA