Tan0012914 (gene) Snake gourd v1

Overview
NameTan0012914
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA/RNA polymerases superfamily protein
LocationLG08: 44511190 .. 44513172 (-)
RNA-Seq ExpressionTan0012914
SyntenyTan0012914
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTCATTTTATGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTTCTGGGCGGGCCCCACTACATCGTAGAGTAAATGTTGGTTGTACTGAGCGTGTCCTGTGCAACGTAGAATGTCATACGTTTTTAAATGGTTAGTAGTATCGATATGCCTTGCGAGGTTTTAATGTCGTACTTGCTGGATTTCTGAAAAGCTATTAAGATTACATGTGTATTTTTAACGCTTGAATACAGATACATATGCTCATAAGGTTCCAGGTAATATGATTTATGAGTTATAGATTTTTATTTCAGTCACTCACTGAGCTTCATAGCTCATTCTTTCAGTATTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATAGTTTGCTGGAAGCTCCAAGAGTTTGATACTTTGTATGTGGGTGAAGATGTTTAGGAAGTCTATATGTATTGTAGAAGGACTTTGAAGTTATGTTTATGTGTACATTCTAGGTTGTGGCTGTGTAAGCCATGGTTGGGAATGTTTATGGTTGTGATGTTCATATCTCTTTCAGTTTTCTAGAGAGTCTTAAGTAGGGTTACCCCTTACGTAGGTTACGTAATTGTCAATATTTCGCTGTGTTAGGTTTAAGTGTTTCTTATACAAGTTTAGTGTGCTTATCAGGTAAAACAGGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAGGTACGTAGTTTCCTAGGCTTGGCAGGATACTACAGGCGGTTGTTGAGGATTTCTCACGATTAGTATTACCCTTAACAACTTTGACAAGGAAGAATGCTAAGTTTGAATGGTCAGATAAGTGTGAACAGAGTTTTTGGGAGCTAAAAAGAGATTAGTTACAAAGACTATTATTCGACACTTCTGATGCTTGGGAAAAGAATATGTGATTTACTGTTATGCTTCCGGATAAGGATTAGGGTGTGTGTTCCTGCAAGAAGGAAAAGTAATAGCTTATGCTTTAAGGCAATTGAAAAGCACGAGTGTAATTGTCCTACTCCCGTTCTTGAGTTAGCAGCAGTTGTTCTAGCAGTGAAGATCTGGAGACATTACTCGTTTGTTGAGAGGTGTCATATTCTTTTACAAATCATAAGAGTCTGAAGTATATCTTTGATTAAAGAAAGTTTATTATGAGATAGAGAAGATAGTTAGAACAGATTAAAGATTATGATTGTACCATAGAATACCATCCTAGTAAGGTGAATGTGGTAGCAGATGCATTGAGCAGGAAGTCAAGACTTCCTATGGATGCCTTGTGTGGTATTCGAGCAACATTTTTATGTACTCTAAGGGATTCTAAGGCGGTTGTAATCGCAGAGAATTGTGGGTCCTTTAGTTTAATTCAGATCAGTCTTCACTCAGAATGAGAGATTGTGAGAACACAATCAGAGAATAGTAACTTGCAGAAAATGTTTGAAATGTCCAAACAGGGCCTAGAGGCATAATTCAAAATGAGAACAAATGGAACCATAGTTCAGCAGAGAAGATTATGTGTCCCGAGTATTAGTCAGCTTAAAGATGCTATTATAGAGGAAGCTCACAATTCAGCTACGCTATGCATCCAAGAAGCACCAAGATGTGTAAAACTGTGAAGGGGACTTATTGGTGGCCTGGGATGAAGCGGGAGATAGCTGACTATGTGGATAGATGTTTGATCTGCCAACAGGTTAAACCAGTTAGACAAAGACCAGAAAGACTCCTTAATCCATTGCTATTGCTGGAATGGAAATGGGAGCATATCACTATAGATTTTCTTTTTGGATTACCGCGTACTTCATGTGGACATGATGGTATTTGGTAA

mRNA sequence

ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTGTGCTTATCAGGTAAAACAGGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGAAAGACTCCTTAATCCATTGCTATTGCTGGAATGGAAATGGGAGCATATCACTATAGATTTTCTTTTTGGATTACCGCGTACTTCATGTGGACATGATGGTATTTGGTAA

Coding sequence (CDS)

ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTGTGCTTATCAGGTAAAACAGGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGAAAGACTCCTTAATCCATTGCTATTGCTGGAATGGAAATGGGAGCATATCACTATAGATTTTCTTTTTGGATTACCGCGTACTTCATGTGGACATGATGGTATTTGGTAA

Protein sequence

MTETLSPRLYGTVCTQVEIELPVPDNLPYLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAERLLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
Homology
[Close]
BLAST of Tan0012914 vs. NCBI nr
Match: KAA0062172.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 42  IVREVNDVCWLHAVCRAKL--AERLLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
           I+ E +   +    C  K+   E  LNPL + EWKWEHIT+DFLFGLPRTS GHDGIW
Sbjct: 542 ILEEAHSSAYAMHPCSTKIQRPEGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIW 599

[Close]
BLAST of Tan0012914 vs. NCBI nr
Match: KAA0026281.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 45  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
           E+ D      +C+    ER     LLNPL +LEWKWEH+T+DFLFGLPRT+ GH+GIW
Sbjct: 150 EIADYVAKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW 207

[Close]
BLAST of Tan0012914 vs. NCBI nr
Match: TYK21477.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 45  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
           E+ D      +C+    ER     LLNPL +LEWKWEH+T+DFLFGLPRT+ GH+GIW
Sbjct: 150 EIADYVAKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW 207

[Close]
BLAST of Tan0012914 vs. NCBI nr
Match: KAA0041696.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-09
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 65   LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
            LNPL +LEWKWEHIT+DFLFGLPRTS GHDGIW
Sbjct: 1360 LNPLPVLEWKWEHITMDFLFGLPRTSSGHDGIW 1392

[Close]
BLAST of Tan0012914 vs. NCBI nr
Match: KAA0043587.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-09
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 65  LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
           LNPLL+ EWKWEHIT+DFLFGLPRTS GHDGIW
Sbjct: 572 LNPLLVPEWKWEHITMDFLFGLPRTSSGHDGIW 604

[Close]
BLAST of Tan0012914 vs. ExPASy TrEMBL
Match: A0A5A7V1T4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005500 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.2e-10
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 42  IVREVNDVCWLHAVCRAKL--AERLLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
           I+ E +   +    C  K+   E  LNPL + EWKWEHIT+DFLFGLPRTS GHDGIW
Sbjct: 542 ILEEAHSSAYAMHPCSTKIQRPEGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIW 599

[Close]
BLAST of Tan0012914 vs. ExPASy TrEMBL
Match: A0A5D3DCU0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00110 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 45  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
           E+ D      +C+    ER     LLNPL +LEWKWEH+T+DFLFGLPRT+ GH+GIW
Sbjct: 150 EIADYVAKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW 207

[Close]
BLAST of Tan0012914 vs. ExPASy TrEMBL
Match: A0A5A7SQ03 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002850 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 45  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
           E+ D      +C+    ER     LLNPL +LEWKWEH+T+DFLFGLPRT+ GH+GIW
Sbjct: 150 EIADYVAKCLICQQVKPERQRPAELLNPLPVLEWKWEHVTMDFLFGLPRTTIGHEGIW 207

[Close]
BLAST of Tan0012914 vs. ExPASy TrEMBL
Match: A0A5D3CQ39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00190 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 65   LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
            LNPL +LEWKWEHIT+DFLFGLPRTS GHDG+W
Sbjct: 991  LNPLPVLEWKWEHITVDFLFGLPRTSSGHDGLW 1023

[Close]
BLAST of Tan0012914 vs. ExPASy TrEMBL
Match: A0A5A7SZT6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold338G00560 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 65   LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW 98
            LNPL +LEWKWEHIT+DFLFGLPRTS GHDG+W
Sbjct: 991  LNPLPVLEWKWEHITVDFLFGLPRTSSGHDGLW 1023

The following BLAST results are available for this feature:
BLAST of Tan0012914 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0012914 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062172.11.1e-0956.90reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0026281.12.4e-0955.17reverse transcriptase [Cucumis melo var. makuwa][more]
TYK21477.12.4e-0955.17reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0041696.13.2e-0987.88DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0043587.13.2e-0987.88DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Tan0012914 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V1T45.2e-1056.90Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89... [more]
A0A5D3DCU01.2e-0955.17Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5A7SQ031.2e-0955.17Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19... [more]
A0A5D3CQ391.5e-0984.85Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90... [more]
A0A5A7SZT61.5e-0984.85Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33... [more]
BLAST of Tan0012914 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012914.1Tan0012914.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding