Tan0012875 (gene) Snake gourd v1

Overview


Name	Tan0012875
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNA-binding protein pno1-like
Location	LG07: 7779959 .. 7782305 (+)
RNA-Seq Expression	Tan0012875
Synteny	Tan0012875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATTTCAGTTTGGATTTCAGTCCCCTCTCCTTTCTCCGTTCTTGTCTCCCTCGCTCTCTCTCGAAGTCGATACCCTCTGTTCTTCTCTCTCAAATTGAATCCTTCAGCTCCGAATCCCAGTTATATAATTTCACCATTGCACCACCACCCATTCTCTCGATACTCGCTTCTCCAGGCTCACCGTGCGGCGGCTCTTCAATTCAAGCTTCAGCCGACATCGCTTTGTTTCGCTCACGTTCTCCCCTCAACATCTCTCCCACCCTCGTCTCTCTGCGTCGCAGGTTGGATTTTAATCTTCGGTTCCTTCGTTTATGCTAACTCTGATTTTCGATTGATACTGGGGCCCATTGGTTTTAAATTCATGATTTCTGCAAGTTTGGCTTCCTGGGTCGTTCTGTTTTCATTTGATAACTGTTGATTGCTTGACTGGGGTAGTGTTGCTTTCGTCGGCAATTGAATTTGACTTCGTTTGAAGACGAGTTCATGTCTTATGGGCTGAAACAGTAAGCGGATAGACATTTTTTCTTCCTTTTGGTTCCTGTTCTGCTTCTTTCATTTTAAATTTGATCTGTCTCAATTTTCTTTTTTACTATAGTTTGTTTAAGATTATTATTTATATGATTTTTTTCCTGTTAATTTTGCGACGTGCAGTTTGTTTGGCTTAATAATTTATCTAGAATTTCTGATTGATTCAGTAACATTGTTTTATAAGTCCTTAAATTGCAAGTAAAGATGGTGTTTTGTTGATTGGTAGTGGGGAGGATTAATTTTCACCTCATGTTTTTTGCAAGTTTGATTGCTTAATTGGAGTATTATTATTTTTATTTGCATTTGAATTTGATTTGGTAGGGAGACTCCCGAGTTCAGGCACTTCATTTTGGGTAACATGTTTACGTCCCACCTATACTGGCCTAATTTTTGCTATTTGTTGGGTTTAGTTTCAGACTTCTTGCTAGCATCAAGTAGAAGAGCTGACTTTTATCAAACGCAAGGCCTATTTGGTATGACTTTTAAGGGTTTAAAAATACTTTTTAACACTTAACCCTTTTTTGTGTACTTGGAAAGTCATTCCAAATAGACCTTTACTCTTCTTGGCTCAAATTTAATTTGCTCGTTTGTTACTAATTATGTTATGTTGGACTATAGTTTATTTTAGAATAAATTTTGATAAAAGTCTATATTCTGTGGTTATATATGTGTATCCCACCTCATTATGAGACCGCCTTTAAAAGGTCGAGGAATGATCTTCTCACTGAGGATTTTATTGTATCTTCATTTAGTTTACTCTTGACTCCCCTGGGCGGGTGGAGGGTGGAGATTTATGCCTTCAATTGTGCTGCCTACATGTGGATGGGTTTTTTTATCTATCTTTTCTTTCACCCAAATATTGCCTATATTTAGTTGTGGTAGTTCTTTGGGTGTTTACAGGGTGGAACTCGGCCCAATTCCATAATGCAGTCTACTGAGGTCCCTGTTTCCATGGAAGTGGAAGCAGTTTCAAGTAAATCAATAACTGAAGTCGGCACCTTGCCGCCAAAACCACAGTTTGATCCTCTAAAGCCTCATGAAATGAATGATGGCCGAGTTCAGTTCCGGAAGGTATCTGTTCCTCCACATCGGTATTCTCCCCTCAAGAAAGCATGGATGGAGATCTACACCCCAATATATGAGCAAATGAAAATTGACATCCGTATGAACCTCAAGGCTCGTAAAGTTGAACTGAAAACCAGAGCAGACACACCTGATATCAGTAACTTGCAAAAGTGTGCTGATTTTGTTCATGCCTTCATGCTCGGTTTTGATGTTATCGATGCCATTGCACTCTTACGGGTGGATGAACTCTATGTAGAATCTTTTGAGATTAAAGATGTTAAAACACTTCGAGGTGAGCACTTGTCCCGTGCCATAGGCAGATTGTCTGGTAAAGCTGGTAAAACAAAGTTTGCCATCGAAAATGCTACAAAGACGAGGATAGTTATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATCAAGATTGCCAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCCCCTGCAGGAAAAGTTTATTCAAAACTAAGAGCAGTTACAGCCAGATTGGCAGAAAGGTTTTGATCTTGTATGATTTTTGCATACTAGTTACTTGAGGAAGAGTGTAACTTTATTGTGAAATGCTTGTGCATTGAAGTTTTGTCCTAGATACCAATTATTATTCAATTTTTCTTCACAAAATGGTTATAAGGTGGTTGACAATCGATAGATTGATGGAAAGTAATTTCGATATCTGTTTAGAGTAAAAGTGTGTTTAACATTTTGTTCCGTTTATGAGCTTG

mRNA sequence

AATATTTCAGTTTGGATTTCAGTCCCCTCTCCTTTCTCCGTTCTTGTCTCCCTCGCTCTCTCTCGAAGTCGATACCCTCTGTTCTTCTCTCTCAAATTGAATCCTTCAGCTCCGAATCCCAGTTATATAATTTCACCATTGCACCACCACCCATTCTCTCGATACTCGCTTCTCCAGGCTCACCGTGCGGCGGCTCTTCAATTCAAGCTTCAGCCGACATCGCTTTGTTTCGCTCACGTTCTCCCCTCAACATCTCTCCCACCCTCGTCTCTCTGCGTCGCAGTTTCAGACTTCTTGCTAGCATCAAGTAGAAGAGCTGACTTTTATCAAACGCAAGGCCTATTTGGGTGGAACTCGGCCCAATTCCATAATGCAGTCTACTGAGGTCCCTGTTTCCATGGAAGTGGAAGCAGTTTCAAGTAAATCAATAACTGAAGTCGGCACCTTGCCGCCAAAACCACAGTTTGATCCTCTAAAGCCTCATGAAATGAATGATGGCCGAGTTCAGTTCCGGAAGGTATCTGTTCCTCCACATCGGTATTCTCCCCTCAAGAAAGCATGGATGGAGATCTACACCCCAATATATGAGCAAATGAAAATTGACATCCGTATGAACCTCAAGGCTCGTAAAGTTGAACTGAAAACCAGAGCAGACACACCTGATATCAGTAACTTGCAAAAGTGTGCTGATTTTGTTCATGCCTTCATGCTCGGTTTTGATGTTATCGATGCCATTGCACTCTTACGGGTGGATGAACTCTATGTAGAATCTTTTGAGATTAAAGATGTTAAAACACTTCGAGGTGAGCACTTGTCCCGTGCCATAGGCAGATTGTCTGGTAAAGCTGGTAAAACAAAGTTTGCCATCGAAAATGCTACAAAGACGAGGATAGTTATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATCAAGATTGCCAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCCCCTGCAGGAAAAGTTTATTCAAAACTAAGAGCAGTTACAGCCAGATTGGCAGAAAGGTTTTGATCTTGTATGATTTTTGCATACTAGTTACTTGAGGAAGAGTGTAACTTTATTGTGAAATGCTTGTGCATTGAAGTTTTGTCCTAGATACCAATTATTATTCAATTTTTCTTCACAAAATGGTTATAAGGTGGTTGACAATCGATAGATTGATGGAAAGTAATTTCGATATCTGTTTAGAGTAAAAGTGTGTTTAACATTTTGTTCCGTTTATGAGCTTG

Coding sequence (CDS)

ATGCAGTCTACTGAGGTCCCTGTTTCCATGGAAGTGGAAGCAGTTTCAAGTAAATCAATAACTGAAGTCGGCACCTTGCCGCCAAAACCACAGTTTGATCCTCTAAAGCCTCATGAAATGAATGATGGCCGAGTTCAGTTCCGGAAGGTATCTGTTCCTCCACATCGGTATTCTCCCCTCAAGAAAGCATGGATGGAGATCTACACCCCAATATATGAGCAAATGAAAATTGACATCCGTATGAACCTCAAGGCTCGTAAAGTTGAACTGAAAACCAGAGCAGACACACCTGATATCAGTAACTTGCAAAAGTGTGCTGATTTTGTTCATGCCTTCATGCTCGGTTTTGATGTTATCGATGCCATTGCACTCTTACGGGTGGATGAACTCTATGTAGAATCTTTTGAGATTAAAGATGTTAAAACACTTCGAGGTGAGCACTTGTCCCGTGCCATAGGCAGATTGTCTGGTAAAGCTGGTAAAACAAAGTTTGCCATCGAAAATGCTACAAAGACGAGGATAGTTATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATCAAGATTGCCAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCCCCTGCAGGAAAAGTTTATTCAAAACTAAGAGCAGTTACAGCCAGATTGGCAGAAAGGTTTTGA

Protein sequence

MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF

Homology

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BLAST of Tan0012875 vs. ExPASy Swiss-Prot
Match: Q9VR89 (RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.0e-66
Identity = 123/187 (65.78%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 37  PHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADT 96
           P +    R + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +T
Sbjct: 53  PPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPET 112

Query: 97  PDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLS 156
           PDI+NLQ+ ADFV AF+ GF+V DA+ALLR+++L+VESFEIKDVKTLRG+H SRAIGRL+
Sbjct: 113 PDIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLA 172

Query: 157 GKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAV 216
           GK G+TKF IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LRAV
Sbjct: 173 GKGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAV 232

Query: 217 TARLAER 224
            +RL+ER
Sbjct: 233 ASRLSER 239

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BLAST of Tan0012875 vs. ExPASy Swiss-Prot
Match: A7RP64 (RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-65
Identity = 119/196 (60.71%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 29  KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKV 88
           +P F P+K  ++  G+ + RK+ VP HRY+PLK+ WM+I+TP+ E +K+ IR NL +R V
Sbjct: 43  RPSFPPVKAQKLAGGKSETRKIPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLGSRHV 102

Query: 89  ELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E++   +T DI  +QK ADFV AF+LGF+V DA+AL+R+D+L++ESFEI DVK L+G+HL
Sbjct: 103 EIRASKETSDIGAVQKAADFVQAFILGFEVEDALALIRLDDLFLESFEIADVKPLKGDHL 162

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN TKTRIV+A+TKIHILGSF NIKIAR ++C+LILGSP  K
Sbjct: 163 SRAIGRVAGKGGKTKFTIENVTKTRIVLAETKIHILGSFQNIKIARTAICNLILGSPPSK 222

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 223 VYGNMRAVASRSAERF 238

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BLAST of Tan0012875 vs. ExPASy Swiss-Prot
Match: Q29IG6 (RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l(1)G0004 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-65
Identity = 120/178 (67.42%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 46  QFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKC 105
           + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +TPDI+NLQK 
Sbjct: 60  ELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQKG 119

Query: 106 ADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFA 165
           ADFV AF+ GF+V DA+ALLR+++L+VE+FEIKDVKTLRG+H SRAIGRL+GK G+TKF 
Sbjct: 120 ADFVKAFLCGFEVDDALALLRLEDLFVETFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFT 179

Query: 166 IENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAER 224
           IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LR+V +RL+ER
Sbjct: 180 IENVTKTRIVLADSKIHILGSYQNIQLARRAICNLILGSPPSKVYGNLRSVASRLSER 237

[Close]

BLAST of Tan0012875 vs. ExPASy Swiss-Prot
Match: Q5F414 (RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.8e-64
Identity = 123/210 (58.57%), Postives = 162/210 (77.14%), Query Frame = 0


Query: 16  SSKSITEVGTLPPK-PQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQ 75
           +++S    G  P K P F PL    +  G+ + RKV VP +RY+PLK+ WM+I+TPI E 
Sbjct: 33  AAESAEAAGPQPSKRPAFPPLPAAALGVGKGEVRKVPVPANRYTPLKENWMKIFTPIVEH 92

Query: 76  MKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVES 135
           +++ IR NLK R VE+KT ++T D+S L K ADFV AF+LGF V DA+AL+R+D+L++ES
Sbjct: 93  LQLQIRFNLKTRNVEIKTCSETKDLSALTKAADFVKAFILGFQVEDALALIRLDDLFLES 152

Query: 136 FEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIAR 195
           FE+ DVK L+G+HLSRAIGR++GK GKTKF IEN T+TRIV+AD+KIHILGSF NIK+AR
Sbjct: 153 FEVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADSKIHILGSFQNIKMAR 212

Query: 196 DSLCSLILGSPAGKVYSKLRAVTARLAERF 225
            ++C+LILGSP  KVY  +RAV +R AERF
Sbjct: 213 TAICNLILGSPPSKVYGNIRAVASRAAERF 242

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BLAST of Tan0012875 vs. ExPASy Swiss-Prot
Match: Q6VBQ6 (RNA-binding protein PNO1 OS=Oryzias latipes OX=8090 GN=pno1 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.2e-64
Identity = 118/196 (60.20%), Postives = 156/196 (79.59%), Query Frame = 0


Query: 29  KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKV 88
           +P F P+   ++  G  + RKV+VP HRY+PLK+ W++I+TPI E +++ +R NLK R V
Sbjct: 49  RPHFPPISADKLR-GPDEMRKVAVPAHRYTPLKENWLKIFTPIVENLQLQVRFNLKTRNV 108

Query: 89  ELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E+KT  +T DI+ L K ADF+ AF+LGF V DA+AL+R+DEL++ESF++ DVK L+G+HL
Sbjct: 109 EIKTCKETQDIAALTKAADFIKAFVLGFQVDDAMALIRLDELFLESFDVTDVKPLKGDHL 168

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN TKTRIV+ADTKIHILGSF NIK+AR ++C+LILGSP  K
Sbjct: 169 SRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSFQNIKMARTAICNLILGSPPSK 228

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 229 VYGNIRAVASRTAERF 243

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BLAST of Tan0012875 vs. NCBI nr
Match: XP_004145908.1 (RNA-binding protein pno1 [Cucumis sativus] >KGN49911.1 hypothetical protein Csa_000276 [Cucumis sativus])

HSP 1 Score: 429.5 bits (1103), Expect = 1.8e-116
Identity = 218/224 (97.32%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVE VSSK++TE+GTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPD+SNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Tan0012875 vs. NCBI nr
Match: XP_038874451.1 (RNA-binding protein pno1-like [Benincasa hispida])

HSP 1 Score: 427.9 bits (1099), Expect = 5.2e-116
Identity = 218/224 (97.32%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVEAVSSK+ TEVGTLPPKP+FDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVSSKTATEVGTLPPKPKFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKID+RMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Tan0012875 vs. NCBI nr
Match: KAA0042585.1 (RNA-binding protein pno1-like [Cucumis melo var. makuwa] >TYK05988.1 RNA-binding protein pno1-like [Cucumis melo var. makuwa])

HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115
Identity = 217/224 (96.88%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVE VSSK++TEVGT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 17  MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 76

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRA+TPDISNLQKCADFVHAFMLGFDVID
Sbjct: 77  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 136

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 137 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 196

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 197 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 240

[Close]

BLAST of Tan0012875 vs. NCBI nr
Match: XP_008437547.1 (PREDICTED: RNA-binding protein pno1-like [Cucumis melo] >XP_016903508.1 PREDICTED: RNA-binding protein pno1-like [Cucumis melo])

HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115
Identity = 217/224 (96.88%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVE VSSK++TEVGT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRA+TPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Tan0012875 vs. NCBI nr
Match: XP_022995381.1 (RNA-binding protein pno1-like [Cucurbita maxima] >XP_022995382.1 RNA-binding protein pno1-like [Cucurbita maxima] >XP_022995383.1 RNA-binding protein pno1-like [Cucurbita maxima] >XP_023532898.1 RNA-binding protein pno1-like [Cucurbita pepo subsp. pepo] >XP_023532899.1 RNA-binding protein pno1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 425.2 bits (1092), Expect = 3.4e-115
Identity = 218/224 (97.32%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVEAV SKSITEVG LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSITEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Tan0012875 vs. ExPASy TrEMBL
Match: A0A0A0KQC5 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139880 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 8.7e-117
Identity = 218/224 (97.32%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVE VSSK++TE+GTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPD+SNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Tan0012875 vs. ExPASy TrEMBL
Match: A0A1S3AUA6 (RNA-binding protein pno1-like OS=Cucumis melo OX=3656 GN=LOC103482927 PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 7.4e-116
Identity = 217/224 (96.88%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVE VSSK++TEVGT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRA+TPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Tan0012875 vs. ExPASy TrEMBL
Match: A0A5D3C450 (RNA-binding protein pno1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00840 PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 7.4e-116
Identity = 217/224 (96.88%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVE VSSK++TEVGT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 17  MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 76

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRA+TPDISNLQKCADFVHAFMLGFDVID
Sbjct: 77  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 136

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 137 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 196

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 197 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 240

[Close]

BLAST of Tan0012875 vs. ExPASy TrEMBL
Match: A0A6J1K1S8 (RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111490946 PE=3 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.6e-115
Identity = 218/224 (97.32%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVEAV SKSITEVG LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSITEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Tan0012875 vs. ExPASy TrEMBL
Match: A0A6J1DX80 (RNA-binding protein pno1-like OS=Momordica charantia OX=3673 GN=LOC111023957 PE=3 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 2.8e-115
Identity = 216/224 (96.43%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 1   MQSTEVPVSMEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTE P SMEVEA+S+K ITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEAPTSMEVEAMSTKPITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTP+YEQMKIDIRMNLKARKVELKTR DTPDISNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPVYEQMKIDIRMNLKARKVELKTREDTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Tan0012875 vs. TAIR 10
Match: AT3G13230.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 345.1 bits (884), Expect = 4.2e-95
Identity = 172/213 (80.75%), Postives = 196/213 (92.02%), Query Frame = 0


Query: 10  MEVEAVSSKSITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYT 69
           MEVE  +  ++     LPPKP F PLK HEM+DG+VQFRK++VPP+RYSPLKKAW++IYT
Sbjct: 7   MEVETATEGTV----PLPPKPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKAWLDIYT 66

Query: 70  PIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDE 129
           PIY+QMK+DIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFD+ DAI+LLR+DE
Sbjct: 67  PIYDQMKVDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDIPDAISLLRMDE 126

Query: 130 LYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFAN 189
           LYVESFEIKDVKTL+GEHLSRAIGRLSGK GKTKFAIEN+TKTRIVIADT+IHILG+F+N
Sbjct: 127 LYVESFEIKDVKTLKGEHLSRAIGRLSGKGGKTKFAIENSTKTRIVIADTRIHILGAFSN 186

Query: 190 IKIARDSLCSLILGSPAGKVYSKLRAVTARLAE 223
           IK+AR SLCSLI+GSPAGKVYSKLR+V+ARL E
Sbjct: 187 IKVARSSLCSLIMGSPAGKVYSKLRSVSARLNE 215

The following BLAST results are available for this feature:

BLAST of Tan0012875 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VR89	3.0e-66	65.78	RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV...	[more]
A7RP64	2.6e-65	60.71	RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1	[more]
Q29IG6	3.3e-65	67.42	RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l...	[more]
Q5F414	2.8e-64	58.57	RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1	[more]
Q6VBQ6	8.2e-64	60.20	RNA-binding protein PNO1 OS=Oryzias latipes OX=8090 GN=pno1 PE=2 SV=1	[more]

BLAST of Tan0012875 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145908.1	1.8e-116	97.32	RNA-binding protein pno1 [Cucumis sativus] >KGN49911.1 hypothetical protein Csa_...	[more]
XP_038874451.1	5.2e-116	97.32	RNA-binding protein pno1-like [Benincasa hispida]	[more]
KAA0042585.1	1.5e-115	96.88	RNA-binding protein pno1-like [Cucumis melo var. makuwa] >TYK05988.1 RNA-binding...	[more]
XP_008437547.1	1.5e-115	96.88	PREDICTED: RNA-binding protein pno1-like [Cucumis melo] >XP_016903508.1 PREDICTE...	[more]
XP_022995381.1	3.4e-115	97.32	RNA-binding protein pno1-like [Cucurbita maxima] >XP_022995382.1 RNA-binding pro...	[more]

BLAST of Tan0012875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQC5	8.7e-117	97.32	KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139880 PE=3 SV=...	[more]
A0A1S3AUA6	7.4e-116	96.88	RNA-binding protein pno1-like OS=Cucumis melo OX=3656 GN=LOC103482927 PE=3 SV=1	[more]
A0A5D3C450	7.4e-116	96.88	RNA-binding protein pno1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1K1S8	1.6e-115	97.32	RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111490946 PE=3 S...	[more]
A0A6J1DX80	2.8e-115	96.43	RNA-binding protein pno1-like OS=Momordica charantia OX=3673 GN=LOC111023957 PE=...	[more]

BLAST of Tan0012875 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13230.1	4.2e-95	80.75	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 129..202 e-value: 1.7E-4 score: 31.0
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 128..224 e-value: 1.1E-22 score: 81.9
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 129..223
None	No IPR available	PANTHER	PTHR12826	RIBONUCLEASE Y	coord: 9..224
IPR039912	Pre-rRNA-processing protein PNO1-like	PANTHER	PTHR12826:SF13	RNA-BINDING PROTEIN PNO1	coord: 9..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012875.1	Tan0012875.1	mRNA
Tan0012875.2	Tan0012875.2	mRNA
Tan0012875.3	Tan0012875.3	mRNA
Tan0012875.4	Tan0012875.4	mRNA
Tan0012875.5	Tan0012875.5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding