Tan0012873 (gene) Snake gourd v1

Overview


Name	Tan0012873
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	AAI domain-containing protein
Location	LG04: 83323454 .. 83325005 (-)
RNA-Seq Expression	Tan0012873
Synteny	Tan0012873

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTCTAGGCATGAAATGTGTTTCAGTTTGGATGTTTTTATTGGCGACTGCAAGTTTAGCTGAACAAAGCAAAGGCGAAACTTGTAGTTTCACTTTCTTTTCTTCCCTTGTTAGGCTGATTCCTTGCAGGCCATCGGTTGCTCCATTCCGCCCCATTCCGCCGACCGTGGCCTGCTGCAATGCTGTCAAATCTCTGGGCCAGTCTTGCTTGTGTGTGCTTGTCAATGGCCCTCCAGTTGCCGGCGTTGATCGCGACTTGGCCATGCTGTTGCCGGCGAAATGCACTGCCAATTTTGGCCCATGTACACTCTCTCTATCTCCTAATTATTTGTGTTTTTGTTTTGGGAATGTCAGTACTCAGTAGTTAATTAAGGCGATTTTGATAACCATTTTGTTTTTAAAATTCGTCGGGTTCATTTGCAACTTTTTATAGTAAGCTTTTCACCTCTCTTCAAGTCACATTGGAATTCTAAGGAAAATTTTAAAAATAAAATCAAGTTTTTAAAAACTATTTGTTTTAGTTTTCAAAATTTGACTTGATTTTTTAACACGTTTTTAATAGGGGATAAAATCAGAAAACTATACGTGAAAATGAAAGTAGTGTTTAACTTAATTTTCAAAAACAAGAAAATAAAAACAAAATAGTTATCAAATTGGACCCCTAAAAAATTGCAAAATAAAAAAGAATAATGTCAACGTTAGAACATAGCTTAATGATAAAGATATGATCCACTACTGCAATTGTTAAACTAAAAAAAAAAAAGAAAAAGCTAAAGATTCCATCACGACAATTCAGAGTAGGAATTAAGAAAAATTACTATTATTATCAACATCAAAATAATTAAAAATTTGTCAATACGAACACAGTTTTGTAGTTTAGTGATTTTTACCTTTCTTAAATGATTGCATATTCGTAACTTCACGTTCGCAATTGTAATTTAATATTCTAAATAAAATGACATTTTAGCAATAGAGTATAAAATATATCTTATACAAATTTCCTCTCTTTTTCTGATTCATAATTGTCAGTTTTTAATTGTGCAGGTGAAATCATGAAATAAAATGGAGACTTGTTTTTGAGTATGAAATAAAATGGAGACTTGAGAGTTATTTCAATAGACATTTTCAGTTCAATAATAAGATGATATATGCAGGAAATCTGAGGTCTATTAAGCTTTGATGTTCATGGTCTATTCACGTGCCTTATTTTTCTTCTATACTAGTCTCTGTCTGTAATATCTAAGTGACTGTACTTTTCTTGATAAATAAAATAGCAATAATATTAGTAATTTAACCTTTGAAAATTGTAACTAGTTACTATTTCAAGATTAATTAGTTACTAATGGCTTGGAAAAAAAATGATTTGATTCTTAGAAAATGATATGTTTGTAATGATTTTTCAAAACTATTTGTCTGTAATTGTGGAGCAATCGGCAAATATTCAATCAATATCCTGCTTTCGGCCCACTCAAATTAATTTTCTTAATGCTATTATTATTATTATTATTATTATTATTATTATTATTATTTGAGTTTGCAATTTCTAA

mRNA sequence

ATGGGGTTTCTAGGCATGAAATGTGTTTCAGTTTGGATGTTTTTATTGGCGACTGCAAGTTTAGCTGAACAAAGCAAAGGCGAAACTTGTAGTTTCACTTTCTTTTCTTCCCTTGTTAGGCTGATTCCTTGCAGGCCATCGGTTGCTCCATTCCGCCCCATTCCGCCGACCGTGGCCTGCTGCAATGCTGTCAAATCTCTGGGCCAGTCTTGCTTGTGTGTGCTTGTCAATGGCCCTCCAGTTGCCGGCGTTGATCGCGACTTGGCCATGCTGTTGCCGGCGAAATGCACTGCCAATTTTGGCCCATTTTGCAATTTCTAA

Coding sequence (CDS)

ATGGGGTTTCTAGGCATGAAATGTGTTTCAGTTTGGATGTTTTTATTGGCGACTGCAAGTTTAGCTGAACAAAGCAAAGGCGAAACTTGTAGTTTCACTTTCTTTTCTTCCCTTGTTAGGCTGATTCCTTGCAGGCCATCGGTTGCTCCATTCCGCCCCATTCCGCCGACCGTGGCCTGCTGCAATGCTGTCAAATCTCTGGGCCAGTCTTGCTTGTGTGTGCTTGTCAATGGCCCTCCAGTTGCCGGCGTTGATCGCGACTTGGCCATGCTGTTGCCGGCGAAATGCACTGCCAATTTTGGCCCATTTTGCAATTTCTAA

Protein sequence

MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVACCNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGPFCNF

Homology

[Close]

BLAST of Tan0012873 vs. NCBI nr
Match: XP_038903285.1 (protein LIM3 [Benincasa hispida])

HSP 1 Score: 191.0 bits (484), Expect = 5.1e-45
Identity = 90/102 (88.24%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 60
           MG+L MK +SVW+FLLAT SLAEQSKGETCSFTFFSSLVRL+PCRPSVAPFRPIPPTVAC
Sbjct: 1   MGYLSMKFLSVWVFLLATTSLAEQSKGETCSFTFFSSLVRLMPCRPSVAPFRPIPPTVAC 60

Query: 61  CNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           CNAVK+LGQ CLCVLVNGPP+AGVDRDLAMLLP KCTANF P
Sbjct: 61  CNAVKTLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDP 102

[Close]

BLAST of Tan0012873 vs. NCBI nr
Match: XP_022949330.1 (protein LIM1-like [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 2.5e-44
Identity = 88/102 (86.27%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 60
           MGFLGMKCVSVW+FL+ T SL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 61  CNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           CNAV+SLGQ CLCVLVNGPPVAGVDRDL MLLP KC  NF P
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDP 102

[Close]

BLAST of Tan0012873 vs. NCBI nr
Match: KAG7036573.1 (hypothetical protein SDJN02_00192, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.3e-44
Identity = 88/102 (86.27%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 60
           MGFLGMKCVSVW+FL+ T SL EQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 61  CNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           CNAV+SLGQ CLCVLVNGPPVAGVDRDL MLLP KC  NF P
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDP 102

[Close]

BLAST of Tan0012873 vs. NCBI nr
Match: XP_022998504.1 (protein LIM3-like [Cucurbita maxima])

HSP 1 Score: 187.6 bits (475), Expect = 5.6e-44
Identity = 88/102 (86.27%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 60
           M FLGMKCVSVW+FL+ T SL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPT AC
Sbjct: 1   MRFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTAAC 60

Query: 61  CNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           CNAV+SLGQ CLCVLVNGPPVAGVDRDL MLLP KC  NF P
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDP 102

[Close]

BLAST of Tan0012873 vs. NCBI nr
Match: XP_023524609.1 (protein LIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.8 bits (473), Expect = 9.6e-44
Identity = 86/102 (84.31%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 60
           MGFLG+KCVS+W+FL+ T SL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGIKCVSIWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 61  CNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           CNAV+SLGQ CLCVLVNGPPVAGVDRDL MLLP KC  NF P
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDP 102

[Close]

BLAST of Tan0012873 vs. ExPASy TrEMBL
Match: A0A6J1GCG0 (protein LIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111452716 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 88/102 (86.27%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 60
           MGFLGMKCVSVW+FL+ T SL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 61  CNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           CNAV+SLGQ CLCVLVNGPPVAGVDRDL MLLP KC  NF P
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDP 102

[Close]

BLAST of Tan0012873 vs. ExPASy TrEMBL
Match: A0A6J1KEI1 (protein LIM3-like OS=Cucurbita maxima OX=3661 GN=LOC111493120 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.7e-44
Identity = 88/102 (86.27%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 60
           M FLGMKCVSVW+FL+ T SL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPT AC
Sbjct: 1   MRFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTAAC 60

Query: 61  CNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           CNAV+SLGQ CLCVLVNGPPVAGVDRDL MLLP KC  NF P
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDP 102

[Close]

BLAST of Tan0012873 vs. ExPASy TrEMBL
Match: A0A1S3CFZ5 (protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.8e-43
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 60
           MG+L MKC+ VW+FLLAT SL E+ KGETCSFTFFSSL RL+PCRPSVAPFRPIPPTVAC
Sbjct: 17  MGYLSMKCLPVWLFLLATTSLVEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVAC 76

Query: 61  CNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           CNAVK+LGQ CLCVLVNGPP+ GVDR+LAMLLP KCTA+F P
Sbjct: 77  CNAVKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTADFDP 118

[Close]

BLAST of Tan0012873 vs. ExPASy TrEMBL
Match: A0A6J1DFH7 (protein LIM3 OS=Momordica charantia OX=3673 GN=LOC111020340 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.3e-41
Identity = 83/102 (81.37%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MGFLGMKCVSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 60
           MGFLGMK +S W+FLL   SL EQSKGETC FTFFSSLVRL+PCRPSVAPFR IPPT AC
Sbjct: 1   MGFLGMKFLSAWVFLLVMTSLGEQSKGETCRFTFFSSLVRLLPCRPSVAPFRAIPPTEAC 60

Query: 61  CNAVKSLGQSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           C AVK+LGQ CLCVLVNGPP+AGVDRDLAMLLP KC ANF P
Sbjct: 61  CKAVKTLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCNANFDP 102

[Close]

BLAST of Tan0012873 vs. ExPASy TrEMBL
Match: A5AEY0 (AAI domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_043972 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.5e-30
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 9   VSVWMFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVACCNAVKSLG 68
           V V +FLL  A LA Q KG TC  +FFS+L+++IPCR +VAPF PIPP+ ACCNAV++LG
Sbjct: 348 VPVLVFLLVIAGLAGQGKGTTCGTSFFSALIQMIPCRAAVAPFSPIPPSEACCNAVRTLG 407

Query: 69  QSCLCVLVNGPPVAGVDRDLAMLLPAKCTANFGP 103
           Q CLCVLVNGPP++GVDR++AMLLP KCT NF P
Sbjct: 408 QPCLCVLVNGPPISGVDRNMAMLLPEKCTTNFDP 441

[Close]

BLAST of Tan0012873 vs. TAIR 10
Match: AT3G07450.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 7.4e-26
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 13  MFLLATASLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVACCNAVKSLGQSCL 72
           + ++  + L  ++ G  C  TF S+L++L+PCRPSVAPF  +PP   CC A+K+LGQ CL
Sbjct: 15  LMVMVQSGLVRETLGHPCGRTFLSALIQLVPCRPSVAPFSTLPPNGLCCAAIKTLGQPCL 74

Query: 73  CVLVNGPPVAGVDRDLAMLLPAKCTANFGPFCN 106
           CVL  GPP+ GVDR LA+ LP KC+ANF P CN
Sbjct: 75  CVLAKGPPIVGVDRTLALHLPGKCSANFLP-CN 106

[Close]

BLAST of Tan0012873 vs. TAIR 10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 30  CSFTFFSSLVRLIPCRPSVAPFRPIPPTVACCNAVKSLGQSCLCVLVNGPPVAGVDRDLA 89
           CS TFFS+LV+LIPCR +VAPF PIPPT  CC+AV +LG+ CLC+L NGPP++G+DR +A
Sbjct: 48  CSRTFFSALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGPPLSGIDRSMA 107

Query: 90  MLLPAKCTANFGP 103
           + LP +C+ANF P
Sbjct: 108 LQLPQRCSANFPP 120

[Close]

BLAST of Tan0012873 vs. TAIR 10
Match: AT5G48490.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-07
Identity = 35/102 (34.31%), Postives = 50/102 (49.02%), Query Frame = 0


Query: 7   KCVSVWMFLLATASL-AEQSKG-ETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVACCNAV 66
           K V++ + ++  ASL  E+S   + C  T       L  C P+V+   P  P++ CCNA+
Sbjct: 4   KKVAIMVIVMVMASLVVERSVAIDLCGMT----QAELNECLPAVSKNNPTSPSLLCCNAL 63

Query: 67  KSLGQSCLCVLVNGPPVA--GVDRDLAMLLPAKCTANFGPFC 105
           K    +CLC   N P +   GVD  LA  LP +C     P C
Sbjct: 64  KHADYTCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

The following BLAST results are available for this feature:

BLAST of Tan0012873 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012873 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903285.1	5.1e-45	88.24	protein LIM3 [Benincasa hispida]	[more]
XP_022949330.1	2.5e-44	86.27	protein LIM1-like [Cucurbita moschata]	[more]
KAG7036573.1	3.3e-44	86.27	hypothetical protein SDJN02_00192, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022998504.1	5.6e-44	86.27	protein LIM3-like [Cucurbita maxima]	[more]
XP_023524609.1	9.6e-44	84.31	protein LIM1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0012873 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCG0	1.2e-44	86.27	protein LIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111452716 PE=4 SV=1	[more]
A0A6J1KEI1	2.7e-44	86.27	protein LIM3-like OS=Cucurbita maxima OX=3661 GN=LOC111493120 PE=4 SV=1	[more]
A0A1S3CFZ5	8.8e-43	81.37	protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1	[more]
A0A6J1DFH7	6.3e-41	81.37	protein LIM3 OS=Momordica charantia OX=3673 GN=LOC111020340 PE=4 SV=1	[more]
A5AEY0	6.5e-30	67.02	AAI domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_043972 PE=4 S...	[more]

BLAST of Tan0012873 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07450.1	7.4e-26	53.76	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G52130.1	1.1e-24	64.38	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G48490.1	3.4e-07	34.31	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 29..104 e-value: 1.6E-11 score: 45.9
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 38..104
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 18..99 e-value: 4.6E-8 score: 33.1
None	No IPR available	PANTHER	PTHR33122:SF33	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN	coord: 6..102
IPR039265	Putative lipid-transfer protein DIR1-like	PANTHER	PTHR33122	LIPID BINDING PROTEIN-RELATED	coord: 6..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012873.1	Tan0012873.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009627	systemic acquired resistance
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005504	fatty acid binding