Tan0012864 (gene) Snake gourd v1

Overview


Name	Tan0012864
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG01: 78443521 .. 78443838 (+)
RNA-Seq Expression	Tan0012864
Synteny	Tan0012864

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACCGCGAAGGAGATTATGGGATCATTGCAGGCGTTGTTTGGACAACCGTCCTCATCGGTTCGTTATGATGCTCTCAAATACGTTTACAACTCTCGTATGAGGGAGGGAACTTCTGTTAGGGAGCATGTCCTTAACATGATAATCCACTTCAACGTGGCAGAAGTAAACAGGGTTGTCATAGATGAGAAAAGTCAGGTTAGCTTTATAATGGAATCTCTTCTGAAGAGTTTCCTGCAGTTTCGCACCAATGCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTCCTCAACGAGCTCCAGATTTTTTAG

mRNA sequence

ATGATCACCGCGAAGGAGATTATGGGATCATTGCAGGCGTTGTTTGGACAACCGTCCTCATCGGTTCGTTATGATGCTCTCAAATACGTTTACAACTCTCGTATGAGGGAGGGAACTTCTGTTAGGGAGCATGTCCTTAACATGATAATCCACTTCAACGTGGCAGAAGTAAACAGGGTTGTCATAGATGAGAAAAGTCAGGTTAGCTTTATAATGGAATCTCTTCTGAAGAGTTTCCTGCAGTTTCGCACCAATGCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTCCTCAACGAGCTCCAGATTTTTTAG

Coding sequence (CDS)

ATGATCACCGCGAAGGAGATTATGGGATCATTGCAGGCGTTGTTTGGACAACCGTCCTCATCGGTTCGTTATGATGCTCTCAAATACGTTTACAACTCTCGTATGAGGGAGGGAACTTCTGTTAGGGAGCATGTCCTTAACATGATAATCCACTTCAACGTGGCAGAAGTAAACAGGGTTGTCATAGATGAGAAAAGTCAGGTTAGCTTTATAATGGAATCTCTTCTGAAGAGTTTCCTGCAGTTTCGCACCAATGCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTCCTCAACGAGCTCCAGATTTTTTAG

Protein sequence

MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRVVIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF

Homology

[Close]

BLAST of Tan0012864 vs. NCBI nr
Match: XP_038876370.1 (uncharacterized protein LOC120068812, partial [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-35
Identity = 78/105 (74.29%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TAKEIM SLQALFGQPSSS  +DA+K+VYN RM+EG +VREHVL+M++HFN+ EVNR 
Sbjct: 88  MVTAKEIMNSLQALFGQPSSSAMHDAIKWVYNCRMKEGPNVREHVLDMMVHFNITEVNRA 147

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           V++EKSQV FIMESL KSF QFR NA+MNKI+YNLTT+LNELQI+
Sbjct: 148 VMNEKSQVGFIMESLPKSFFQFRINAMMNKIDYNLTTILNELQIY 192

[Close]

BLAST of Tan0012864 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TA+EIM SLQ +FGQ S  +++DALKY+YN+RM EG SVREHVLNM++HFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           VIDE SQVSFI+ESL +SFLQFR+NAVMNKI Y LTTLLNELQ F
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of Tan0012864 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TA+EIM SLQ +FGQ S  +++DALKY+YN+RM EG SVREHVLNM++HFNVAE+N  
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           VIDE SQVSFI+ESL +SFLQFR+NAVMNKI Y LTTLLNELQ F
Sbjct: 147 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 191

[Close]

BLAST of Tan0012864 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TA+EIM SLQ +FGQ S  +++DALKY+YN+RM EG SVREHVLNM++HFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           VIDE SQVSFI+ESL +SFLQFR+NAVMNKI Y LTTLLNELQ F
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of Tan0012864 vs. NCBI nr
Match: KAA0032020.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 78/105 (74.29%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TA EIM SLQ +FGQ S  +++DALKY+YN+RM EG SVREHVLNMI+HFNVAE+N  
Sbjct: 88  MLTAHEIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMIVHFNVAEMNGA 147

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           VIDE SQVSFI+ESL +SFLQFR+NAVMNKI Y LTTLLNELQ F
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of Tan0012864 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TA+EIM SLQ +FGQ S  +++DALKY+YN+RM EG SVREHVLNM++HFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           VIDE SQVSFI+ESL +SFLQFR+NAVMNKI Y LTTLLNELQ F
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of Tan0012864 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TA+EIM SLQ +FGQ S  +++DALKY+YN+RM EG SVREHVLNM++HFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           VIDE SQVSFI+ESL +SFLQFR+NAVMNKI Y LTTLLNELQ F
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of Tan0012864 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TA+EIM SLQ +FGQ S  +++DALKY+YN+RM EG SVREHVLNM++HFNVAE+N  
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           VIDE SQVSFI+ESL +SFLQFR+NAVMNKI Y LTTLLNELQ F
Sbjct: 265 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 309

[Close]

BLAST of Tan0012864 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TA+EIM SLQ +FGQ S  +++DALKY+YN+RM EG SVREHVLNM++HFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           VIDE SQVSFI+ESL +SFLQFR+NAVMNKI Y LTTLLNELQ F
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

[Close]

BLAST of Tan0012864 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MITAKEIMGSLQALFGQPSSSVRYDALKYVYNSRMREGTSVREHVLNMIIHFNVAEVNRV 60
           M+TA+EIM SLQ +FGQ S  +++DALKY+YN+RM EG SVREHVLNM++HFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVSFIMESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIF 106
           VIDE SQVSFI+ESL +SFLQFR+NAVMNKI Y LTTLLNELQ F
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 192

The following BLAST results are available for this feature:

BLAST of Tan0012864 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012864 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876370.1	2.1e-35	74.29	uncharacterized protein LOC120068812, partial [Benincasa hispida]	[more]
KAA0044955.1	1.2e-33	73.33	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.2e-33	73.33	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.2e-33	73.33	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0032020.1	1.2e-33	74.29	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0012864 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	5.6e-34	73.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	5.6e-34	73.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	5.6e-34	73.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	5.6e-34	73.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	5.6e-34	73.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0012864 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..103 e-value: 8.0E-10 score: 38.6
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..104
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012864.1	Tan0012864.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding