Tan0012843 (gene) Snake gourd v1

Overview
NameTan0012843
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTropomyosin
LocationLG05: 2999915 .. 3000238 (-)
RNA-Seq ExpressionTan0012843
SyntenyTan0012843
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTTGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTTCCAAATCAAAGCCTTCCCGCCGCAAATCTCGCCGTGGTGCAAAAGAAGGTAAGCATTCTTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGTTGATGCAAGTGCAGGCAGTGCCGCAGCCGTGGCTGCTGTTGCGGTTGCGGTCACGGCGGTGACCATGGATGACTTTGAAGATGACGGTGGCAGCACCCATGGCCACGGCGGTGAAGGAGGAGGCGGTGGAGGTGGAGGTGGCGGAGATTAG

mRNA sequence

ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTTGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTTCCAAATCAAAGCCTTCCCGCCGCAAATCTCGCCGTGGTGCAAAAGAAGGTAAGCATTCTTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGTTGATGCAAGTGCAGGCAGTGCCGCAGCCGTGGCTGCTGTTGCGGTTGCGGTCACGGCGGTGACCATGGATGACTTTGAAGATGACGGTGGCAGCACCCATGGCCACGGCGGTGAAGGAGGAGGCGGTGGAGGTGGAGGTGGCGGAGATTAG

Coding sequence (CDS)

ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTTGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTTCCAAATCAAAGCCTTCCCGCCGCAAATCTCGCCGTGGTGCAAAAGAAGGTAAGCATTCTTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGTTGATGCAAGTGCAGGCAGTGCCGCAGCCGTGGCTGCTGTTGCGGTTGCGGTCACGGCGGTGACCATGGATGACTTTGAAGATGACGGTGGCAGCACCCATGGCCACGGCGGTGAAGGAGGAGGCGGTGGAGGTGGAGGTGGCGGAGATTAG

Protein sequence

MESSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNTVDASAGSAAAVAAVAVAVTAVTMDDFEDDGGSTHGHGGEGGGGGGGGGGD
Homology
BLAST of Tan0012843 vs. NCBI nr
Match: TYK15390.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 8.8e-29
Identity = 86/102 (84.31%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 3   SSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNTVDASA 62
           SSKICFCIP HKNGHKADGGSEKSSKSKPSRRKSRRG+KEGKHSS SDSSGNGN+ DA A
Sbjct: 433 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 492

Query: 63  GSAAAVAAVAVAVTAVTMDDFEDDGGSTHGHGGEGGGGGGGG 105
            SA AVA  AVAVTAVTMD  +DDGGSTH HGGEGG GG GG
Sbjct: 493 ASATAVA--AVAVTAVTMDALDDDGGSTHVHGGEGGSGGAGG 532

BLAST of Tan0012843 vs. NCBI nr
Match: KAA0061866.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 8.8e-29
Identity = 86/102 (84.31%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 3   SSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNTVDASA 62
           SSKICFCIP HKNGHKADGGSEKSSKSKPSRRKSRRG+KEGKHSS SDSSGNGN+ DA A
Sbjct: 463 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 522

Query: 63  GSAAAVAAVAVAVTAVTMDDFEDDGGSTHGHGGEGGGGGGGG 105
            SA AVA  AVAVTAVTMD  +DDGGSTH HGGEGG GG GG
Sbjct: 523 ASATAVA--AVAVTAVTMDALDDDGGSTHVHGGEGGSGGAGG 562

BLAST of Tan0012843 vs. NCBI nr
Match: KAG7010529.1 (hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 5.7e-28
Identity = 91/105 (86.67%), Postives = 92/105 (87.62%), Query Frame = 0

Query: 1   MESSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNTVDA 60
           MESSKICFCIP HKN HK DGGSEKSSKSKPSRRKS  GAKEGKHSSSSDSSGNGNT DA
Sbjct: 57  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDA 116

Query: 61  S-AGSAAAVAAVAVAVTAVTMDDF-EDDGGSTHGHGGEGGGGGGG 104
           S AGSAAAVA  A+AVTAVTMD   EDDGGSTH HGGEGGGGGGG
Sbjct: 117 SAAGSAAAVA--AIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG 157

BLAST of Tan0012843 vs. NCBI nr
Match: KAG6605437.1 (hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 4.8e-27
Identity = 83/106 (78.30%), Postives = 87/106 (82.08%), Query Frame = 0

Query: 1   MESSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNTVDA 60
           MESSKICFCIP HKNG KADGGSEKSSKSKPSRRKSRR AK GKHS SSDSSG+GNT DA
Sbjct: 460 MESSKICFCIPRHKNGLKADGGSEKSSKSKPSRRKSRRAAKGGKHSPSSDSSGDGNTGDA 519

Query: 61  ---SAGSAAAVAAVAVAVTAVTMDDFEDDGGSTHGHGGEGGGGGGG 104
              SA +A A  AVA A T V +D  EDDGGS+HGHGGEGGGGGGG
Sbjct: 520 NESSASAAVAAVAVAAAATVVAVDALEDDGGSSHGHGGEGGGGGGG 565

BLAST of Tan0012843 vs. NCBI nr
Match: KAG6570682.1 (hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 4.8e-27
Identity = 90/105 (85.71%), Postives = 91/105 (86.67%), Query Frame = 0

Query: 1   MESSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNTVDA 60
           MESSKICFCIP HKN HK DGGSEKSSKSKPSRRKS  GAKEGKHSSSSDSSGNGNT  A
Sbjct: 125 MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGAA 184

Query: 61  S-AGSAAAVAAVAVAVTAVTMDDF-EDDGGSTHGHGGEGGGGGGG 104
           S AGSAAAVA  A+AVTAVTMD   EDDGGSTH HGGEGGGGGGG
Sbjct: 185 SAAGSAAAVA--AIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG 225

BLAST of Tan0012843 vs. ExPASy TrEMBL
Match: A0A5D3CVK1 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29
Identity = 86/102 (84.31%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 3   SSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNTVDASA 62
           SSKICFCIP HKNGHKADGGSEKSSKSKPSRRKSRRG+KEGKHSS SDSSGNGN+ DA A
Sbjct: 433 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 492

Query: 63  GSAAAVAAVAVAVTAVTMDDFEDDGGSTHGHGGEGGGGGGGG 105
            SA AVA  AVAVTAVTMD  +DDGGSTH HGGEGG GG GG
Sbjct: 493 ASATAVA--AVAVTAVTMDALDDDGGSTHVHGGEGGSGGAGG 532

BLAST of Tan0012843 vs. ExPASy TrEMBL
Match: A0A5A7V5U9 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29
Identity = 86/102 (84.31%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 3   SSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNTVDASA 62
           SSKICFCIP HKNGHKADGGSEKSSKSKPSRRKSRRG+KEGKHSS SDSSGNGN+ DA A
Sbjct: 463 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 522

Query: 63  GSAAAVAAVAVAVTAVTMDDFEDDGGSTHGHGGEGGGGGGGG 105
            SA AVA  AVAVTAVTMD  +DDGGSTH HGGEGG GG GG
Sbjct: 523 ASATAVA--AVAVTAVTMDALDDDGGSTHVHGGEGGSGGAGG 562

BLAST of Tan0012843 vs. ExPASy TrEMBL
Match: A0A0A0KFD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.9e-27
Identity = 82/101 (81.19%), Postives = 85/101 (84.16%), Query Frame = 0

Query: 3   SSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNTVDASA 62
           SSKICFCIP HKNGHKADGGSEKSSKSKPSRRKS R +KEGKHSSSSDSSGNGN  +  A
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63

Query: 63  GSAAAVAAVAVAVTAVTMDDFEDDGGSTHGHGGEGGGGGGG 104
            SA AVA  AVAVTAVTMD  +DDGGSTH HGGEGG G GG
Sbjct: 64  ASATAVA--AVAVTAVTMDALDDDGGSTHVHGGEGGSGAGG 102

BLAST of Tan0012843 vs. ExPASy TrEMBL
Match: A0A6J1D515 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 82/106 (77.36%), Postives = 85/106 (80.19%), Query Frame = 0

Query: 1   MESSKICFCIPCHKNGHKADGGSEKSSKSKPSRRKSRRGAKEGKHSSSSDSSGNGNT--- 60
           MES+KICFCIP HKNGHKA+GGSEKSSKSKPSRRKSRRG K GKHSSSSDSSG+GNT   
Sbjct: 1   MESTKICFCIPRHKNGHKANGGSEKSSKSKPSRRKSRRGEKGGKHSSSSDSSGDGNTNTG 60

Query: 61  VDASAGSAAAVAAVAV-AVTAVTMDDFEDDGGSTHGHGGEGGGGGG 103
             A  GS AAVAAV V   TA TMD  EDDGGS HGHGG G GGGG
Sbjct: 61  AAAGGGSDAAVAAVVVMGTTAATMDAVEDDGGSAHGHGGGGEGGGG 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK15390.18.8e-2984.31tropomyosin [Cucumis melo var. makuwa][more]
KAA0061866.18.8e-2984.31tropomyosin [Cucumis melo var. makuwa][more]
KAG7010529.15.7e-2886.67hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6605437.14.8e-2778.30hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6570682.14.8e-2785.71hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5D3CVK14.3e-2984.31Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE... [more]
A0A5A7V5U94.3e-2984.31Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE... [more]
A0A0A0KFD08.9e-2781.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1[more]
A0A6J1D5151.3e-2577.36circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012843.1Tan0012843.1mRNA