Tan0012840 (gene) Snake gourd v1

Overview


Name	Tan0012840
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG01: 49482377 .. 49484192 (-)
RNA-Seq Expression	Tan0012840
Synteny	Tan0012840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGATGTATTGGCTAAAAAATACGAATCCTTAGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTCTAAGACATGAGGCTATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTTAATATTGCTGAAGTAAATGGTGGTGCCATCGACGAGGAAAATAAGGTTAGTTTATTATGGAGTCTCTTCCGAAGAGCTTCATACCATTTCAGACGAATGCTTCTCTGAATAAAATAGAGTTTAATCTGACAACCCTTCTTAACGAGCTCCAACATTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGTAAATGTTGTCACCACAAGGAAAGTTTTAAGAGGATCGTCCTCTAAAACTAAAGTTGGACCTTCAAAGAACAAGAATGTTCAAATGAAAAAGAAGTGCAAGGGGAAGGCTCCCATGACAAACAAGGGAAAGAAAGTTGCAAAAAAAGGAAAATGTTTTCACTGCGACCAAAACGGGTACTGGAAGAGGAACTGCCCGAAGTACCTTGCTGAGAAAAAAGCAGATAAAGAAGCACATGGTAAATATGATTTACTAGTTGTTGAAACATGTTTAGTGGAGTATGATACCTCAACCCGGATATTGGATTCAGGGGCCTAATCATATTAGCTTCTCTTTTAGAAACTAGTTCCTCGAAAAGCTAAAAGAAGGCGAGATCACCTCAAGGTTGGAACATGAAAGGTTGTCTCGGCTGATGCAAAGGGGAGACTTGAAGTTGTATTTCGATGATAGATATATCATACTTAAAGATGTTTTGTATGCTCCTAAAATGAAACTAACTTAATATCTATCACGTGTATATTAGAACAAATGTATAAAATATCCTTTGAAATCAATGAAGCGCTCATTTTCGTAAAAGGTATTCAAAATTGTTCTGCTATACTAGAAAACAACTTATATAAGTTAAGACCAACTAAAGCAAAATTTGTCTTAAATATCGAGATGTTTAGAATAAATTGAAACTCGTAATAAAAGACAAAAGTTTCTTCCAATGCCTATTTATGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAATGGACTCCTAAATCAGTTAGAAGACAATTCTTTGCCTCCATGTGAGTCTTGTCTTGAGGGAAAAATGACTAAGAGATCTTTTAGTAGAAAAGGTCTCAGAGCAAAAATACCCTTAGAGCTCGTACATTCGGACCTCTGTGGACCGATGAATGTCAAAGCTCGAGGTGGGTATGAATATTTCATCAGTTCATTGATGATTATTCAAGGTATGATCATATTTACCTAATGCATCACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGACTAAGGTTGAGAACCAGTTAGGTAAAACGATTAAGACACTTCGATCAAATCGAGGTGGGGAGTACATGGACTTAAGATTCCAAGACTAATATGATAGAACATGGAATCAAGTCACAACTCTCTGCACCTAATATGCCTCAGCAGAACGGTGTATCTGATAGAAGAAACAGAACCTTGTTGGACATGGTTCGCTCAATGATGAGTTTTGCTAAGTTACCTGATTCCTTTTGGGGACATGCATTAGAAACCGTTGTCTATATTTTGAAGAACGTTCCCTCTAAAAGTGTGTTAGACACACCTTATGAGTTATGGAAAGGGCATAAAGGTAGTTTACGTCACATTAGGATCTGAGGATGCCTAACGCACGTGTTGGTGCAAAATCCTAA

mRNA sequence

ATGACTGATGTATTGGCTAAAAAATACGAATCCTTAGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTCTAAGACATGAGGCTATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTTAATATTGCTGAAGTAAATGGTGGTGCCATCGACGAGGAAAATAAGCTCCAACATTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGTAAATGTTGATCTGAGGATGCCTAACGCACGTGTTGGTGCAAAATCCTAA

Coding sequence (CDS)

ATGACTGATGTATTGGCTAAAAAATACGAATCCTTAGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTCTAAGACATGAGGCTATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTTAATATTGCTGAAGTAAATGGTGGTGCCATCGACGAGGAAAATAAGCTCCAACATTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGTAAATGTTGATCTGAGGATGCCTAACGCACGTGTTGGTGCAAAATCCTAA

Protein sequence

MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLRMPNARVGAKS

Homology

[Close]

BLAST of Tan0012840 vs. NCBI nr
Match: TYJ98401.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 80/110 (72.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
           M+DVLAKK+ESL TAK IMDSLK MFGQP   LRHE IKYIY KRMKEGTSVREHVL+MM
Sbjct: 1   MSDVLAKKHESLATAKEIMDSLKGMFGQPEWSLRHETIKYIYTKRMKEGTSVREHVLNMM 60

Query: 61  VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLRMPNARVGAKS 111
           +HFNIAEVNGGAIDE N  Q FQ LTK KGKEVE NV       + G+ S
Sbjct: 61  MHFNIAEVNGGAIDEAN--QRFQNLTKGKGKEVEANVTTTKGKFKRGSSS 108

[Close]

BLAST of Tan0012840 vs. NCBI nr
Match: KAA0042331.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK15457.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 78/110 (70.91%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 1   MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
           M+DVLAKK+ESL T K IMDSLK MFGQP   LRHEAIKYIY KRMKEGTS++EHVLDMM
Sbjct: 45  MSDVLAKKHESLATTKEIMDSLKRMFGQPEWSLRHEAIKYIYTKRMKEGTSIKEHVLDMM 104

Query: 61  VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLRMPNARVGAKS 111
           +HFNIAEVNGGAID  N  Q FQ LTK KGKEVE NV       + G+ S
Sbjct: 105 MHFNIAEVNGGAIDGAN--QCFQNLTKGKGKEVEANVATTKRKFKRGSSS 152

[Close]

BLAST of Tan0012840 vs. NCBI nr
Match: KAA0046961.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31
Identity = 75/97 (77.32%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
          M+DVLAKK+ESL TAK IMD LK MFG+P   LRHEAIKYIY KRMK+GTSVREHVLDMM
Sbjct: 1  MSDVLAKKHESLATAKEIMDLLKGMFGKPEWSLRHEAIKYIYTKRMKKGTSVREHVLDMM 60

Query: 61 VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV 98
          +HFNIAEVNGGAID+ N  QHFQ LTK KG+EV+ NV
Sbjct: 61 MHFNIAEVNGGAIDKAN--QHFQNLTKGKGEEVKANV 95

[Close]

BLAST of Tan0012840 vs. NCBI nr
Match: TYK04821.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31
Identity = 75/97 (77.32%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
          M+DVLAKK+ESL TAK IMD LK MFG+P   LRHEAIKYIY KRMK+GTSVREHVLDMM
Sbjct: 1  MSDVLAKKHESLATAKEIMDLLKGMFGKPEWSLRHEAIKYIYTKRMKKGTSVREHVLDMM 60

Query: 61 VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV 98
          +HFNIAEVNGGAID+ N  QHFQ LTK KG+EV+ NV
Sbjct: 61 MHFNIAEVNGGAIDKAN--QHFQNLTKGKGEEVKANV 95

[Close]

BLAST of Tan0012840 vs. NCBI nr
Match: KAA0041127.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-31
Identity = 75/97 (77.32%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1   MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
           M+DVLAKK+ESL TAK IMDSLK +FGQP   L HEAIKYIY K+MKEGTSVREHVLDMM
Sbjct: 64  MSDVLAKKHESLATAKEIMDSLKGIFGQPEWSLIHEAIKYIYTKQMKEGTSVREHVLDMM 123

Query: 61  VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV 98
           +HFNIAE+NGG IDE N  Q FQ LTK KGKEVE NV
Sbjct: 124 MHFNIAEINGGVIDEAN--QRFQNLTKGKGKEVEANV 158

[Close]

BLAST of Tan0012840 vs. ExPASy TrEMBL
Match: A0A5D3BI96 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001520 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.5e-33
Identity = 80/110 (72.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
           M+DVLAKK+ESL TAK IMDSLK MFGQP   LRHE IKYIY KRMKEGTSVREHVL+MM
Sbjct: 1   MSDVLAKKHESLATAKEIMDSLKGMFGQPEWSLRHETIKYIYTKRMKEGTSVREHVLNMM 60

Query: 61  VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLRMPNARVGAKS 111
           +HFNIAEVNGGAIDE N  Q FQ LTK KGKEVE NV       + G+ S
Sbjct: 61  MHFNIAEVNGGAIDEAN--QRFQNLTKGKGKEVEANVTTTKGKFKRGSSS 108

[Close]

BLAST of Tan0012840 vs. ExPASy TrEMBL
Match: A0A5D3CU35 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00270 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.5e-32
Identity = 78/110 (70.91%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 1   MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
           M+DVLAKK+ESL T K IMDSLK MFGQP   LRHEAIKYIY KRMKEGTS++EHVLDMM
Sbjct: 45  MSDVLAKKHESLATTKEIMDSLKRMFGQPEWSLRHEAIKYIYTKRMKEGTSIKEHVLDMM 104

Query: 61  VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLRMPNARVGAKS 111
           +HFNIAEVNGGAID  N  Q FQ LTK KGKEVE NV       + G+ S
Sbjct: 105 MHFNIAEVNGGAIDGAN--QCFQNLTKGKGKEVEANVATTKRKFKRGSSS 152

[Close]

BLAST of Tan0012840 vs. ExPASy TrEMBL
Match: A0A5A7U032 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001440 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.4e-32
Identity = 75/97 (77.32%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
          M+DVLAKK+ESL TAK IMD LK MFG+P   LRHEAIKYIY KRMK+GTSVREHVLDMM
Sbjct: 1  MSDVLAKKHESLATAKEIMDLLKGMFGKPEWSLRHEAIKYIYTKRMKKGTSVREHVLDMM 60

Query: 61 VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV 98
          +HFNIAEVNGGAID+ N  QHFQ LTK KG+EV+ NV
Sbjct: 61 MHFNIAEVNGGAIDKAN--QHFQNLTKGKGEEVKANV 95

[Close]

BLAST of Tan0012840 vs. ExPASy TrEMBL
Match: A0A5D3BYQ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001470 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.4e-32
Identity = 75/97 (77.32%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
          M+DVLAKK+ESL TAK IMD LK MFG+P   LRHEAIKYIY KRMK+GTSVREHVLDMM
Sbjct: 1  MSDVLAKKHESLATAKEIMDLLKGMFGKPEWSLRHEAIKYIYTKRMKKGTSVREHVLDMM 60

Query: 61 VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV 98
          +HFNIAEVNGGAID+ N  QHFQ LTK KG+EV+ NV
Sbjct: 61 MHFNIAEVNGGAIDKAN--QHFQNLTKGKGEEVKANV 95

[Close]

BLAST of Tan0012840 vs. ExPASy TrEMBL
Match: A0A5A7THM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00400 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 75/97 (77.32%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1   MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMM 60
           M+DVLAKK+ESL TAK IMDSLK +FGQP   L HEAIKYIY K+MKEGTSVREHVLDMM
Sbjct: 64  MSDVLAKKHESLATAKEIMDSLKGIFGQPEWSLIHEAIKYIYTKQMKEGTSVREHVLDMM 123

Query: 61  VHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV 98
           +HFNIAE+NGG IDE N  Q FQ LTK KGKEVE NV
Sbjct: 124 MHFNIAEINGGVIDEAN--QRFQNLTKGKGKEVEANV 158

The following BLAST results are available for this feature:

BLAST of Tan0012840 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012840 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98401.1	1.3e-32	72.73	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042331.1	1.1e-31	70.91	gag/pol protein [Cucumis melo var. makuwa] >TYK15457.1 gag/pol protein [Cucumis ...	[more]
KAA0046961.1	1.9e-31	77.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK04821.1	1.9e-31	77.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0041127.1	4.3e-31	77.32	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0012840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI96	6.5e-33	72.73	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G0015...	[more]
A0A5D3CU35	5.5e-32	70.91	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G0027...	[more]
A0A5A7U032	9.4e-32	77.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G0014...	[more]
A0A5D3BYQ4	9.4e-32	77.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00147...	[more]
A0A5A7THM4	2.1e-31	77.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G0040...	[more]

BLAST of Tan0012840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 5..80 e-value: 1.9E-6 score: 27.7
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..85
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012840.1	Tan0012840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding