Tan0012560 (gene) Snake gourd v1

Overview


Name	Tan0012560
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 66902163 .. 66902486 (-)
RNA-Seq Expression	Tan0012560
Synteny	Tan0012560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGTTAGCACTTGTGTTCTTAGTCTGCATTGTCATTTTAGCACCATCAGCAATGGCCCGCAGGATGGCTGTGGCGGAGGCGCCTGATCCGTTCGTAACAGAGGATTTCTCATTGTTGGGCTGCACATCGTTTGTTCCAGAGGCAACCAAATGTGTGATTGATGTGTTCAAGAATGCAATTGCTCCACATCCTTCTTGTTGCCGAGCCATTTCAAAGCTCAATGATTGTTCCTCCGATTTTCTCAAAGACATTCCTTCCGTTGATATGGTTTTGATTAAGAGCATTTGTGCATTGTGGGGCGTTTCAATTTCTTAG

mRNA sequence

ATGGCGCCAAAGTTAGCACTTGTGTTCTTAGTCTGCATTGTCATTTTAGCACCATCAGCAATGGCCCGCAGGATGGCTGTGGCGGAGGCGCCTGATCCGTTCGTAACAGAGGATTTCTCATTGTTGGGCTGCACATCGTTTGTTCCAGAGGCAACCAAATGTGTGATTGATGTGTTCAAGAATGCAATTGCTCCACATCCTTCTTGTTGCCGAGCCATTTCAAAGCTCAATGATTGTTCCTCCGATTTTCTCAAAGACATTCCTTCCGTTGATATGGTTTTGATTAAGAGCATTTGTGCATTGTGGGGCGTTTCAATTTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGTTAGCACTTGTGTTCTTAGTCTGCATTGTCATTTTAGCACCATCAGCAATGGCCCGCAGGATGGCTGTGGCGGAGGCGCCTGATCCGTTCGTAACAGAGGATTTCTCATTGTTGGGCTGCACATCGTTTGTTCCAGAGGCAACCAAATGTGTGATTGATGTGTTCAAGAATGCAATTGCTCCACATCCTTCTTGTTGCCGAGCCATTTCAAAGCTCAATGATTGTTCCTCCGATTTTCTCAAAGACATTCCTTCCGTTGATATGGTTTTGATTAAGAGCATTTGTGCATTGTGGGGCGTTTCAATTTCTTAG

Protein sequence

MAPKLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAIAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS

Homology

[Close]

BLAST of Tan0012560 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 74/101 (73.27%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL LVFLVCI ILA S MA   A+A A DPF  E+FSLLGCTSF+ EAT C++DV KNA+
Sbjct: 5   KLPLVFLVCIAILAVSGMAHTGALAPA-DPFTAEEFSLLGCTSFISEATNCMVDVMKNAV 64

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 105
           APHPSCC+A SKLNDCSS+FLK IPS DM+LIK ICALWGV
Sbjct: 65  APHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0012560 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL LVF VC+ ILA S +A   A A + DPF  E+ SLLGCTSF+ EATKCVIDV KNA+
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAAPS-DPFTAEELSLLGCTSFISEATKCVIDVMKNAV 64

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 105
           APHPSCC+A SKLNDCS +FLK IPS DM+LIK ICALWGV
Sbjct: 65  APHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0012560 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 2.7e-30
Identity = 71/101 (70.30%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL LVF VC+ ILA S +A   A A + DPF  E  SLLGCTSF+ EATKCVIDV KNA+
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAAPS-DPFTAEKLSLLGCTSFISEATKCVIDVMKNAV 64

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 105
           APHPSCC+A SKLNDCS +FLK IPS DM+LIK ICALWGV
Sbjct: 65  APHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0012560 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 6.1e-30
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL LV LVCI ILA S  AR   VA A     +EDFSL  C SFVP+ATKCVIDV KNA+
Sbjct: 8   KLPLVLLVCIAILASSVTARPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVLKNAV 67

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 108
           APHPSCC AIS+L+DCSS FLKDIPS DM+L+KSICA WGVSIS
Sbjct: 68  APHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0012560 vs. NCBI nr
Match: KAA0050065.1 (hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 5.2e-29
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL L  L CI ILA S MAR + VA A       D SL  C SFVP+AT+CVIDV KNA+
Sbjct: 7   KLPLALLFCIFILASSVMARPVTVAAAAP---EGDISLFPCKSFVPKATECVIDVLKNAV 66

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 108
           APHPSCC+AIS+L+DCSS FLKDIPSVDM+L+KSICALWGVSIS
Sbjct: 67  APHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]

BLAST of Tan0012560 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.9e-31
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL LVF VC+ ILA S +A   A A + DPF  E+ SLLGCTSF+ EATKCVIDV KNA+
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAAPS-DPFTAEELSLLGCTSFISEATKCVIDVMKNAV 64

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 105
           APHPSCC+A SKLNDCS +FLK IPS DM+LIK ICALWGV
Sbjct: 65  APHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0012560 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 71/101 (70.30%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL LVF VC+ ILA S +A   A A + DPF  E  SLLGCTSF+ EATKCVIDV KNA+
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAAPS-DPFTAEKLSLLGCTSFISEATKCVIDVMKNAV 64

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 105
           APHPSCC+A SKLNDCS +FLK IPS DM+LIK ICALWGV
Sbjct: 65  APHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0012560 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL LV LVCI ILA S  AR   VA A     +EDFSL  C SFVP+ATKCVIDV KNA+
Sbjct: 8   KLPLVLLVCIAILASSVTARPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVLKNAV 67

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 108
           APHPSCC AIS+L+DCSS FLKDIPS DM+L+KSICA WGVSIS
Sbjct: 68  APHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0012560 vs. ExPASy TrEMBL
Match: A0A5A7U8Y3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00460 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL L  L CI ILA S MAR + VA A       D SL  C SFVP+AT+CVIDV KNA+
Sbjct: 7   KLPLALLFCIFILASSVMARPVTVAAAAP---EGDISLFPCKSFVPKATECVIDVLKNAV 66

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 108
           APHPSCC+AIS+L+DCSS FLKDIPSVDM+L+KSICALWGVSIS
Sbjct: 67  APHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]

BLAST of Tan0012560 vs. ExPASy TrEMBL
Match: A0A5D3CEQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00180 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 4   KLALVFLVCIVILAPSAMARRMAVAEAPDPFVTEDFSLLGCTSFVPEATKCVIDVFKNAI 63
           KL L  L CI ILA S MAR + VA A       D SL  C SFVP+AT+CVIDV KNA+
Sbjct: 7   KLPLALLFCIFILASSVMARPVTVAAAAP---IGDISLFPCKSFVPKATECVIDVLKNAV 66

Query: 64  APHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 108
           APHPSCC+AIS+L+DCSS FLKDIPSVDM+L+KSICALWGVSIS
Sbjct: 67  APHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

The following BLAST results are available for this feature:

BLAST of Tan0012560 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653021.1	1.3e-32	73.27	hypothetical protein Csa_004567 [Cucumis sativus]	[more]
TYK10330.1	1.2e-30	70.30	hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]	[more]
KAA0050078.1	2.7e-30	70.30	hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]	[more]
TYK10345.1	6.1e-30	71.15	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KAA0050065.1	5.2e-29	69.23	hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0012560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CG41	5.9e-31	70.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U483	1.3e-30	70.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CFS6	3.0e-30	71.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U8Y3	2.5e-29	69.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEQ4	2.5e-29	69.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Tan0012560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012560.1	Tan0012560.1	mRNA