Tan0012434 (gene) Snake gourd v1

Overview
NameTan0012434
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionHistone-lysine n-methyltransferase
LocationLG02: 87603707 .. 87604272 (+)
RNA-Seq ExpressionTan0012434
SyntenyTan0012434
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAAATATAATAATCTCTGATCACTGGCCGGATTCAGAACCCTGAACCCCCTGGTTCTGTTCCGCCGTCGGTTTCCCAATACCACCGCCTCAACCACCGTCCCCTATAAAAAAAACCCACTTGTCCATAATCGCCTCCTTCTCGATTTCACTTGCTGAATTTTCTTTTCCCCTAAAACAATGGCGGCTATGTCACCTCAGCCTTATCCTGTCGAGAAGAACATCGCCGGAGATCAAGAGGAGGCGGAGACGAAGGACCCAGATGTGACGAGGCATATTCTCTTGAAGTCTTCCCACTCCACCCAAGTACTGGAGAAACCGGTGGTACTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCGGGCGGTGGTGGGAGCTCTGTTCAGTTCGCCGTTCTCCGACAAAAGCGGCGACACTCGTCAGAGGAAATGGGTCGACGAACCCTTCACTTCGCTCTAAACCAATTCCAAATTTGTAAAATTCTTCCTTCTTTTTTTTTTTTTTTAATTTAGATTATGTTAGATGAATTTCAAAATCTCTATTAAACTATTTTTATCCAA

mRNA sequence

TTAAAATATAATAATCTCTGATCACTGGCCGGATTCAGAACCCTGAACCCCCTGGTTCTGTTCCGCCGTCGGTTTCCCAATACCACCGCCTCAACCACCGTCCCCTATAAAAAAAACCCACTTGTCCATAATCGCCTCCTTCTCGATTTCACTTGCTGAATTTTCTTTTCCCCTAAAACAATGGCGGCTATGTCACCTCAGCCTTATCCTGTCGAGAAGAACATCGCCGGAGATCAAGAGGAGGCGGAGACGAAGGACCCAGATGTGACGAGGCATATTCTCTTGAAGTCTTCCCACTCCACCCAAGTACTGGAGAAACCGGTGGTACTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCGGGCGGTGGTGGGAGCTCTGTTCAGTTCGCCGTTCTCCGACAAAAGCGGCGACACTCGTCAGAGGAAATGGGTCGACGAACCCTTCACTTCGCTCTAAACCAATTCCAAATTTGTAAAATTCTTCCTTCTTTTTTTTTTTTTTTAATTTAGATTATGTTAGATGAATTTCAAAATCTCTATTAAACTATTTTTATCCAA

Coding sequence (CDS)

ATGGCGGCTATGTCACCTCAGCCTTATCCTGTCGAGAAGAACATCGCCGGAGATCAAGAGGAGGCGGAGACGAAGGACCCAGATGTGACGAGGCATATTCTCTTGAAGTCTTCCCACTCCACCCAAGTACTGGAGAAACCGGTGGTACTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCGGGCGGTGGTGGGAGCTCTGTTCAGTTCGCCGTTCTCCGACAAAAGCGGCGACACTCGTCAGAGGAAATGGGTCGACGAACCCTTCACTTCGCTCTAA

Protein sequence

MAAMSPQPYPVEKNIAGDQEEAETKDPDVTRHILLKSSHSTQVLEKPVVLRRIRQRKRVNKFRAVVGALFSSPFSDKSGDTRQRKWVDEPFTSL
Homology
BLAST of Tan0012434 vs. NCBI nr
Match: KAG6585633.1 (hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020540.1 hypothetical protein SDJN02_17225, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 74/99 (74.75%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 1  MAAMSPQPYPVEKNIAGDQEEAET-----KDPDVTRHILLKSSHSTQVLEKPVVLRRIRQ 60
          MAA+SP  YPV     GDQE+ +T       PDVTRHI LKSSHSTQVLEK VVLRRIRQ
Sbjct: 1  MAAVSPHSYPV-----GDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQ 60

Query: 61 RKRVNKFRAVVGALFSSPFSDKSGDTRQRKWVDEPFTSL 95
          RKRVNKF+AVVGALFSSPF DK+G+ RQRKWVDEPFTSL
Sbjct: 61 RKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 94

BLAST of Tan0012434 vs. NCBI nr
Match: KAG6598407.1 (hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 75/103 (72.82%), Postives = 83/103 (80.58%), Query Frame = 0

Query: 1   MAAMSPQPYPVEKNIAGDQEEAETK--------DPDVTRHILLKSSHSTQV-LEKPVVLR 60
           MAAMSP P  VE +IAG QEEAE +         PDVTRHI++KSS STQV LEK VVLR
Sbjct: 1   MAAMSPHPCSVENSIAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLR 60

Query: 61  RIRQRKRVNKFRAVVGALFSSPFSDKSGDTRQRKWVDEPFTSL 95
           RIR RKRVNKF+AVVGALFSSPF+DK+ +TRQRKWVDEPFTSL
Sbjct: 61  RIRHRKRVNKFQAVVGALFSSPFADKADETRQRKWVDEPFTSL 103

BLAST of Tan0012434 vs. NCBI nr
Match: KAA0065270.1 (hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 73/103 (70.87%), Postives = 80/103 (77.67%), Query Frame = 0

Query: 1   MAAMSPQPYPVEKNIAGDQEEAETK-------DPDVTRHILLKS--SHSTQVLEKPVVLR 60
           MAAMSP+PY VEK I GDQ EAE +        P VTRHI++KS  SHS Q LEK VVLR
Sbjct: 1   MAAMSPRPYSVEKKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLR 60

Query: 61  RIRQRKRVNKFRAVVGALFSSPFSDKSGDTRQRKWVDEPFTSL 95
           RIRQRKRVNK RA VGALFSSPF+DK+ +T QRKWVDEPFTSL
Sbjct: 61  RIRQRKRVNKLRAAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of Tan0012434 vs. NCBI nr
Match: KGN62559.1 (hypothetical protein Csa_022598 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 7.5e-24
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0

Query: 1   MAAMSPQPYPVEKNIAGDQEEAETK-------------DPDVTRHILLKSS------HST 60
           MAAMSPQPY VEK IAGDQ EAE +              P VTRHI++KSS       S 
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QVLEKPVVLRRIRQRKRVNKFRAVVGALFSSPFSDKSGDTRQRKWVDEPFTSL 95
           Q LEK VVLRRIRQRKRVNK RA VGALFSSPF+DK+    +RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of Tan0012434 vs. NCBI nr
Match: KAG7029360.1 (Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 1  MAAMSPQPYPVEKNIAGDQEEAETK--------DPDVTRHILLKSSHSTQV-LEKPVVLR 60
          MAAMSP P  VE +IAG QEEAE +         PDVTRHI++KSS STQV LEK VVLR
Sbjct: 1  MAAMSPHPCSVENSIAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLR 60

Query: 61 RIRQRKRVNKFRAVVGALFSSPFSDKSGDT 82
          RIR RKRVNKF+AVVGALFSSPF+DK+ +T
Sbjct: 61 RIRHRKRVNKFQAVVGALFSSPFADKADET 90

BLAST of Tan0012434 vs. ExPASy TrEMBL
Match: A0A5A7VDJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006120 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 9.2e-28
Identity = 73/103 (70.87%), Postives = 80/103 (77.67%), Query Frame = 0

Query: 1   MAAMSPQPYPVEKNIAGDQEEAETK-------DPDVTRHILLKS--SHSTQVLEKPVVLR 60
           MAAMSP+PY VEK I GDQ EAE +        P VTRHI++KS  SHS Q LEK VVLR
Sbjct: 1   MAAMSPRPYSVEKKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLR 60

Query: 61  RIRQRKRVNKFRAVVGALFSSPFSDKSGDTRQRKWVDEPFTSL 95
           RIRQRKRVNK RA VGALFSSPF+DK+ +T QRKWVDEPFTSL
Sbjct: 61  RIRQRKRVNKLRAAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of Tan0012434 vs. ExPASy TrEMBL
Match: A0A0A0LNJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.6e-24
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0

Query: 1   MAAMSPQPYPVEKNIAGDQEEAETK-------------DPDVTRHILLKSS------HST 60
           MAAMSPQPY VEK IAGDQ EAE +              P VTRHI++KSS       S 
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QVLEKPVVLRRIRQRKRVNKFRAVVGALFSSPFSDKSGDTRQRKWVDEPFTSL 95
           Q LEK VVLRRIRQRKRVNK RA VGALFSSPF+DK+    +RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of Tan0012434 vs. ExPASy TrEMBL
Match: A0A2N9G0R5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 18  DQEEAETKDPDVTRHILLKSSHSTQVLEKPVVLRRIRQRKRVNKFRAVVGALFSSPFSDK 77
           +QE  ET++P VT H+ +K +HSTQ L+K VVLRRIRQRKRVNK +A   AL SSPFS K
Sbjct: 28  EQEVPETQNP-VTSHLYIKPTHSTQPLDKEVVLRRIRQRKRVNKVKATFQALVSSPFSAK 87

Query: 78  SG--DTRQRKWVDEPFTSL 95
                  ++KW D+ F +L
Sbjct: 88  PDKVSVHKKKWADDAFAAL 105

BLAST of Tan0012434 vs. ExPASy TrEMBL
Match: A0A5N6RR18 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018466 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 18  DQEEAETKDPDVTRHILLKSSHSTQVLEKPVVLRRIRQRKRVNKFRAVVGALFSSPFSDK 77
           DQ++ ET++P VT H+ +K +H  Q L+K VVLRR RQRKR+NK +A + AL  SPFS+K
Sbjct: 29  DQQDPETQNP-VTSHLYIKHTHPAQTLDKDVVLRRFRQRKRLNKVKATLKALLGSPFSEK 88

Query: 78  ----SGDTRQRKWVDEPFTS 94
               S    ++KWVD+ F +
Sbjct: 89  HEQVSVPVPEKKWVDDAFAA 107

BLAST of Tan0012434 vs. ExPASy TrEMBL
Match: A0A6A4LFT7 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_10847 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 18  DQEEAETKDPDVTRHILLKSSHSTQVLEKPVVLRRIRQRKRVNKFRAVVGALFSSPFSDK 77
           D EE E K   VT H+ LK +HST+ L+K VVLRR+RQRKR++K    V AL +SPF+ K
Sbjct: 25  DPEERE-KPNIVTTHLYLKPTHSTETLDKEVVLRRLRQRKRMSKVGTAVKALLTSPFASK 84

Query: 78  SGD---TRQRKWVDEPFTS 94
            GD    R +KWVD+ F +
Sbjct: 85  PGDKASVRHKKWVDDAFAA 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6585633.11.3e-2874.75hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6598407.12.3e-2872.82hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0065270.11.9e-2770.87hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa][more]
KGN62559.17.5e-2463.72hypothetical protein Csa_022598 [Cucumis sativus][more]
KAG7029360.11.1e-1968.89Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. ... [more]
Match NameE-valueIdentityDescription
A0A5A7VDJ59.2e-2870.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LNJ03.6e-2463.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1[more]
A0A2N9G0R51.6e-1154.43Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1[more]
A0A5N6RR181.7e-1048.75Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018466 PE=4 SV=1[more]
A0A6A4LFT72.3e-1051.90Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR35324:SF4BNAA08G03750D PROTEINcoord: 14..94
NoneNo IPR availablePANTHERPTHR35324BNAA08G03750D PROTEINcoord: 14..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012434.1Tan0012434.1mRNA