Tan0012371 (gene) Snake gourd v1

Overview
NameTan0012371
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionZinc knuckle CX2CX4HX4C
LocationLG01: 13576063 .. 13576728 (-)
RNA-Seq ExpressionTan0012371
SyntenyTan0012371
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTGGATATCACGGACATGGGCTAAGGCGATTGGGAACTCCATAGGGACTTTTATGGATGTTGAAACGGATGAAAATGGTGAATGTGAGGGAGTTTCTCTGAGGATAAAAGTCAAGTTTGATATACAAAAACCCTTATGCAGGGGAACCAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGGTACCCGATAACTTACGAGAAGCTGTCAGAATTCTATTATCGGTACGTCAGACTGGGGCACGTGTATAAGGATTGTGAGGAAAAACAAGACTAGCCAGAGGGCGAAGCTCGGTTTGGAGAATGGCAACGAGAAATAATAGACCAAAAGGACGATCAGGGGTACGGAGAAAGGATCAATTTTCTAAGGGAGTAAGTGTTAGGGGCAGGGGCGATCTAACTTTCAGTACAGTAAAGGCGTTTACTCAACTCAAGCAAGGAAGTCAGAACGAAAAAGGAAAAGGAAAAGTTACACAGGGAGAAGAAGTGTGAAAGTATCCATAATCATCAAAACAATAATACTGAAAAAGACTGTCACATCCACTTATCTGGTCAGGGTACGGGGAATATGAGTGTTGAGGAGGCCATGTTTGTTACCGTTGGAAGGAAAACAGAGGCTACGAAGGATAAAAAATGGGAAAAGGAACTAAAGTGGGAATGA

mRNA sequence

ATGAACTGGATATCACGGACATGGGCTAAGGCGATTGGGAACTCCATAGGGACTTTTATGGATGTTGAAACGGATGAAAATGGTGAATGTGAGGGAGTTTCTCTGAGGATAAAAGTCAAGTTTGATATACAAAAACCCTTATGCAGGGGAACCAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGTGTTGAGGAGGCCATGTTTGTTACCGTTGGAAGGAAAACAGAGGCTACGAAGGATAAAAAATGGGAAAAGGAACTAAAGTGGGAATGA

Coding sequence (CDS)

ATGAACTGGATATCACGGACATGGGCTAAGGCGATTGGGAACTCCATAGGGACTTTTATGGATGTTGAAACGGATGAAAATGGTGAATGTGAGGGAGTTTCTCTGAGGATAAAAGTCAAGTTTGATATACAAAAACCCTTATGCAGGGGAACCAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGTGTTGAGGAGGCCATGTTTGTTACCGTTGGAAGGAAAACAGAGGCTACGAAGGATAAAAAATGGGAAAAGGAACTAAAGTGGGAATGA

Protein sequence

MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVEEAMFVTVGRKTEATKDKKWEKELKWE
Homology
BLAST of Tan0012371 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1   MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKV 56
           M+W+++T A  +GN+IG F+DV+ +E G   G SLRI+V  DI KPL RG  I +
Sbjct: 137 MSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINI 191

BLAST of Tan0012371 vs. NCBI nr
Match: KAE8782072.1 (hypothetical protein D1007_44590 [Hordeum vulgare])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 4   ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG 57
           + R   + IG  +G F+DVE  E+G  EG SLRIKVK DI KPL RGT I  G
Sbjct: 106 MDRAEREMIGEKVGAFVDVEVGEDGMAEGESLRIKVKLDITKPLMRGTVIHTG 158

BLAST of Tan0012371 vs. NCBI nr
Match: PON92154.1 (Zinc knuckle CX2CX4HX4C [Trema orientale])

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 4  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVC 63
          +S+  AK +GN  G F++VE D+NG C G  L ++V  DI KPL RG  +++GS    + 
Sbjct: 9  MSKAVAKLLGNQAGRFVEVEKDDNGSCLGRFLNVRVIVDINKPLRRGAKVRIGSGGHTIW 68

Query: 64 VE 66
          V+
Sbjct: 69 VD 70

BLAST of Tan0012371 vs. NCBI nr
Match: BAS74010.1 (Os01g0714300 [Oryza sativa Japonica Group])

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-05
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 4  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG 57
          ++R   KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G
Sbjct: 8  MNRCTGKAIGDEVGTFLEMDMDENCTAVGRFLRIKIRLDIRKPLMRGVTVMIG 60

BLAST of Tan0012371 vs. NCBI nr
Match: KAE8767168.1 (putative reverse transcriptase [Hordeum vulgare])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 4   ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG 57
           + R   + IG  +G F+DVE   +G   G SLRIKVK DI KPL RGT I++G
Sbjct: 65  MDRATREMIGEKVGDFVDVEVGADGLAVGESLRIKVKLDITKPLMRGTVIQIG 117

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1   MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKV 56
           M+W+++T A  +GN+IG F+DV+ +E G   G SLRI+V  DI KPL RG  I +
Sbjct: 137 MSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINI 191

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A2P5F2Z2 (Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_119730 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.6e-06
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 4  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVC 63
          +S+  AK +GN  G F++VE D+NG C G  L ++V  DI KPL RG  +++GS    + 
Sbjct: 9  MSKAVAKLLGNQAGRFVEVEKDDNGSCLGRFLNVRVIVDINKPLRRGAKVRIGSGGHTIW 68

Query: 64 VE 66
          V+
Sbjct: 69 VD 70

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A803Q6Y1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 5   SRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCV 64
           SR  AKA+GN IG FM+V TD   E  G  LRI+VK D+ KPL RG NI++  + ++  V
Sbjct: 132 SRGLAKALGNIIGEFMEVFTDSLNEGWGPFLRIRVKIDVTKPLRRGRNIRLQQIRDKFWV 191

Query: 65  E 66
           +
Sbjct: 192 D 192

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A0P0V7D8 (Os01g0714300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0714300 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 4  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG 57
          ++R   KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G
Sbjct: 8  MNRCTGKAIGDEVGTFLEMDMDENCTAVGRFLRIKIRLDIRKPLMRGVTVMIG 60

BLAST of Tan0012371 vs. ExPASy TrEMBL
Match: A0A2P5C5M3 (Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_296730 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 12 IGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE 66
          IG+ IG   +VETDENG+C G  +RI+V+ DI  PL RG+ + +G+  E V V+
Sbjct: 31 IGHRIGVCQEVETDENGKCLGRFVRIRVQLDISSPLRRGSRVMLGNDTEIVLVD 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022156185.11.2e-0549.09uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
KAE8782072.11.5e-0554.72hypothetical protein D1007_44590 [Hordeum vulgare][more]
PON92154.12.0e-0541.94Zinc knuckle CX2CX4HX4C [Trema orientale][more]
BAS74010.15.8e-0545.28Os01g0714300 [Oryza sativa Japonica Group][more]
KAE8767168.11.7e-0450.94putative reverse transcriptase [Hordeum vulgare][more]
Match NameE-valueIdentityDescription
A0A6J1DU555.6e-0649.09uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A2P5F2Z29.6e-0641.94Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_119730 PE=4 SV... [more]
A0A803Q6Y12.8e-0549.18Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A0P0V7D82.8e-0545.28Os01g0714300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0714300 PE... [more]
A0A2P5C5M31.1e-0448.15Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_296730 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012371.1Tan0012371.1mRNA