Tan0012360 (gene) Snake gourd v1

Overview
NameTan0012360
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
LocationLG11: 32354736 .. 32356832 (+)
RNA-Seq ExpressionTan0012360
SyntenyTan0012360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGCTTTCTCGCTCCCTCGTTTTCCTTGTCCTTGTTTTTTCAGGTTTGTTTTCCACACATCATTCTTTATGTTTGGTCGTCTCCGGCACTAGTTATTAAATTTTAACACTTCAAATTTCGCCAAACATTTCAAATAAAATAGCCACTAATGGTTAAAGATGATTTTTTTTTTCTCTCTCTCTTTCTCTATAAGGAAAGGCAATTCTTTTAAATTTTTAACTTTTCTCTTAGTATATGAATGTCAAATATGTTATGTAAAACATGTGAAATTTTGTACACAAAGATGCATCATTAAATTATAGTTTTATTAGCATATTTGAATGTTATTTGAGATATAAAATCCAACATGTCTATCAATAGGATTTGACCTCACCCATCAACAAAACTCAGTAACCATGATATGTGTAAATACGTGAATAAACAAATTAAAATGACACATTAGTTTTATATTTAAAACTAGCAACTTTTTAAAGGGAATGACTCAATTTATAATTTTAATACATCGAAAAGTAAAATTGAAACTTTTAAAAGGTTAAGAATTAAATAGAAAATTATCTCTAATATTAAAGACTTTATTATATCTCTTGAGACCATTTGGATTAACTTTTTTAAGTGCTTATTTTCTTAAGAAAATTATTTAATAGATTTTTAATATTTGACAACCACTCAAATTCAATTTGAGAAACAAGTTATTTTAGGTGCAACACTTAAACAAAATTTTAGACAAAGTCCTTTTAATTAAGTGTTTAAGTTAGAATTTCTCTCACGTTTTCACAGTATATTGAAATGACCAAAATACTCTCACATTACTGTCGCCACTATCGTGATCACGACATACTGTTCACAACAACTGCACACTCATTGTCGCCCACCATCTCTAGCGACTATAGTTGGTGACAACATTGGCCACCAATGCTAGTGACCATCGCAAACCCACCCTAGGTGACCACTAGTGATATTTCTAGCCAACTATTGCGTGTGATTACTCTGACGACCAACGACCAACAATCCCCTCCTACGGTAGTTGGTAATGTTTTGAATATAAATTTTAGTTTATTAGTTCGTAGTGTTTAATAGTCGTATTTTATAGTAACACTACTACAAAAACAAATTGTAAAATTATAATTTAACATCAGTTGAAGTATTTTGAGTGTAGAGCAAACAAAACAAATTGGTTTATAAAAATACTTTTAAGAAAACATAACCAAACAAAAGAATGTTATAATCTTAAACGATTTTTATAAAAGAAAAAAAAGAAGGTTTAAAATGCAATTTTCAAAAATAATTAAATTGAAAAATAATCCAATCCAGCCCTTAGTCTTCAATTTTAATTTTTCTTTTCAAATCACAACTCTGTATTTTTAAAAGGTGTTTTGAATTATGTTGTAACTTATGCTTTGAATAAATATATTATTAGTGCTTTATTTAATAACTATTTTGATTTTGGTTTTTTGTTTTTGAAAATTGGGTTTGTGTTCTCACCATTAATTTCTCTACAATATTTTCCATCTTTATTCACAAAACATTTAATTTTTAACCAAATTCAAAAAAAAAAAAAATATTGAAAACTTAGTTTGCTTTTTTAAAACATAAGTAAAAAATAGATAACAAAACAAAAAAACTTATAAGCGAAAGTAGTGTTTATAATTTTTATTTTCAAAAATCAAAAACTAAAAACCAAATGTTATCAAACAAAGTCTTAATCACTAAATTACATACCTCATTACTTTATGTTTGTTTTGAATATATTTTGGAGCTCGTTTTAATAATTAAATTTACCCTTAAGTATTATTTTAAATTGATTCAATCAAATTTCTACACGTAGTAGATTGAATAGAAAAATGATGACCTAACTTAAAATAATTTTGGAGAGTTGATATGATATTAAAAAATTTTGCAGTTGCATTGATGGTGCCTCAAACAAGCTACGCAAAGCAATGTGTTGAGAAGTTATATGAAATTATATGTGTAGCTGATGAATGTCATCAGAAGTGTCAAGAGAAGCACCCCAATTCATCATCTCAATGTCTTCCAGTTCTTCCAATTCCTCTAAACTATGTTTGCTATTGTACCTTCGATTGTCCGGCTTGA

mRNA sequence

ATGGCAAAGCTTTCTCGCTCCCTCGTTTTCCTTGTCCTTGTTTTTTCAGTTGCATTGATGGTGCCTCAAACAAGCTACGCAAAGCAATGTGTTGAGAAGTTATATGAAATTATATGTGTAGCTGATGAATGTCATCAGAAGTGTCAAGAGAAGCACCCCAATTCATCATCTCAATGTCTTCCAGTTCTTCCAATTCCTCTAAACTATGTTTGCTATTGTACCTTCGATTGTCCGGCTTGA

Coding sequence (CDS)

ATGGCAAAGCTTTCTCGCTCCCTCGTTTTCCTTGTCCTTGTTTTTTCAGTTGCATTGATGGTGCCTCAAACAAGCTACGCAAAGCAATGTGTTGAGAAGTTATATGAAATTATATGTGTAGCTGATGAATGTCATCAGAAGTGTCAAGAGAAGCACCCCAATTCATCATCTCAATGTCTTCCAGTTCTTCCAATTCCTCTAAACTATGTTTGCTATTGTACCTTCGATTGTCCGGCTTGA

Protein sequence

MAKLSRSLVFLVLVFSVALMVPQTSYAKQCVEKLYEIICVADECHQKCQEKHPNSSSQCLPVLPIPLNYVCYCTFDCPA
Homology
BLAST of Tan0012360 vs. NCBI nr
Match: KGN52438.1 (hypothetical protein Csa_008032 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 1  MAKLSRSLVFLV-LVFSVALM-VPQTSYAKQCVEKLYEIICVADECHQKCQEKHPN-SSS 60
          M+++S S  F+V L+ SVA M +P+ + AK C +KLY++ CVADEC Q+C  K+PN SSS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 QCLPVLPIPLNYVCYCTFDC 78
          QCL + PIP +  C C ++C
Sbjct: 61 QCLSLPPIPFHNACLCFYNC 80

BLAST of Tan0012360 vs. NCBI nr
Match: XP_022923678.1 (putative defensin-like protein 129 [Cucurbita moschata])

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-09
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 1  MAKLSRSLVFLVLVFSVALMVPQTSYAKQCVEKLYEIICVADECHQKCQEKHPNSSSQCL 60
          MAK    L+FL+LV SVALM+P+ + A  C E+LYE  C A  C ++C+EK+  S+ +C+
Sbjct: 1  MAKFCCPLLFLLLVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFECV 60

Query: 61 PVLPIPLNYVCYCTFDCP 79
          P    P +  C C FDCP
Sbjct: 61 PNPLHPPHVACLCFFDCP 78

BLAST of Tan0012360 vs. NCBI nr
Match: KGN52439.1 (hypothetical protein Csa_009048 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 1  MAKLSRSLVFL-VLVFSVALMVPQTSYAKQCVEKLYEIICVADECHQKCQEKHPNSSSQC 60
          MAK S SL F+   + S A ++P    A +C  KLY+  C+  +C QKC +K+PNSSS+C
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYD-GCLPKDCTQKCSDKYPNSSSEC 60

Query: 61 LPVLPIPLNYVCYCTFDCPA 80
          + V PIP +Y CYC +DC A
Sbjct: 61 VAVPPIPFHYSCYCFYDCAA 79

BLAST of Tan0012360 vs. NCBI nr
Match: XP_022990690.1 (putative defensin-like protein 129 [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-09
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 1  MAKLSRSLVFLVLVFSVALMVPQTSYAKQCVEKLYEIICVADECHQKCQEKHPNSSSQCL 60
          MAK    L+FL+LV S ALM+P+ + A  C E+LYE  C A  C ++C+EK+  S+ +C+
Sbjct: 1  MAKFCCPLLFLLLVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFECV 60

Query: 61 PVLPIPLNYVCYCTFDCP 79
          P    P +  C C FDCP
Sbjct: 61 PNPLHPPHIACLCFFDCP 78

BLAST of Tan0012360 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 1  MAKLSRS-LVFLVLVFSVALM-VPQTSYAKQCVEKLYEIICVADECHQKCQEKHPNSSSQ 60
          M KL  S ++ +VL+ +VA++ +PQ + A +C + LY   C   +C QKC EKH  +S Q
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CLPVLPIPLNYVCYCTFDC 78
          C+P  P    Y CYC + C
Sbjct: 61 CIPTDPDQTIYACYCFYTC 79

BLAST of Tan0012360 vs. ExPASy TrEMBL
Match: A0A0A0KS76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 1  MAKLSRSLVFLV-LVFSVALM-VPQTSYAKQCVEKLYEIICVADECHQKCQEKHPN-SSS 60
          M+++S S  F+V L+ SVA M +P+ + AK C +KLY++ CVADEC Q+C  K+PN SSS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 QCLPVLPIPLNYVCYCTFDC 78
          QCL + PIP +  C C ++C
Sbjct: 61 QCLSLPPIPFHNACLCFYNC 80

BLAST of Tan0012360 vs. ExPASy TrEMBL
Match: A0A6J1EAA9 (putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-10
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 1  MAKLSRSLVFLVLVFSVALMVPQTSYAKQCVEKLYEIICVADECHQKCQEKHPNSSSQCL 60
          MAK    L+FL+LV SVALM+P+ + A  C E+LYE  C A  C ++C+EK+  S+ +C+
Sbjct: 1  MAKFCCPLLFLLLVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFECV 60

Query: 61 PVLPIPLNYVCYCTFDCP 79
          P    P +  C C FDCP
Sbjct: 61 PNPLHPPHVACLCFFDCP 78

BLAST of Tan0012360 vs. ExPASy TrEMBL
Match: A0A0A0KU45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.5e-10
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 1  MAKLSRSLVFL-VLVFSVALMVPQTSYAKQCVEKLYEIICVADECHQKCQEKHPNSSSQC 60
          MAK S SL F+   + S A ++P    A +C  KLY+  C+  +C QKC +K+PNSSS+C
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYD-GCLPKDCTQKCSDKYPNSSSEC 60

Query: 61 LPVLPIPLNYVCYCTFDCPA 80
          + V PIP +Y CYC +DC A
Sbjct: 61 VAVPPIPFHYSCYCFYDCAA 79

BLAST of Tan0012360 vs. ExPASy TrEMBL
Match: A0A6J1JQS7 (putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 1  MAKLSRSLVFLVLVFSVALMVPQTSYAKQCVEKLYEIICVADECHQKCQEKHPNSSSQCL 60
          MAK    L+FL+LV S ALM+P+ + A  C E+LYE  C A  C ++C+EK+  S+ +C+
Sbjct: 1  MAKFCCPLLFLLLVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFECV 60

Query: 61 PVLPIPLNYVCYCTFDCP 79
          P    P +  C C FDCP
Sbjct: 61 PNPLHPPHIACLCFFDCP 78

BLAST of Tan0012360 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.4e-06
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 1  MAKLSRS-LVFLVLVFSVALM-VPQTSYAKQCVEKLYEIICVADECHQKCQEKHPNSSSQ 60
          M KL  S ++ +VL+ +VA++ +PQ + A +C + LY   C   +C QKC EKH  +S Q
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CLPVLPIPLNYVCYCTFDC 78
          C+P  P    Y CYC + C
Sbjct: 61 CIPTDPDQTIYACYCFYTC 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN52438.13.0e-1050.00hypothetical protein Csa_008032 [Cucumis sativus][more]
XP_022923678.11.2e-0946.15putative defensin-like protein 129 [Cucurbita moschata][more]
KGN52439.12.0e-0947.50hypothetical protein Csa_009048 [Cucumis sativus][more]
XP_022990690.13.4e-0944.87putative defensin-like protein 129 [Cucurbita maxima][more]
KGN64987.11.3e-0540.51hypothetical protein Csa_022748 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KS761.5e-1050.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1[more]
A0A6J1EAA95.6e-1046.15putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316... [more]
A0A0A0KU459.5e-1047.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1[more]
A0A6J1JQS71.6e-0944.87putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 P... [more]
A0A0A0LVZ56.4e-0640.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 26..77
e-value: 1.7E-7
score: 31.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012360.1Tan0012360.1mRNA