Tan0012323 (gene) Snake gourd v1

Overview


Name	Tan0012323
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA/RNA polymerases superfamily protein
Location	LG01: 91607548 .. 91607898 (+)
RNA-Seq Expression	Tan0012323
Synteny	Tan0012323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTAACAGAATATGAGAAGAATTTCACAGAATTATCAAAGTATGCTAGCATTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTACGAACAGAGATCCGAACGACTGTGACAGCAAGTTCGGAGTGGGCTGAGTTCTCCAAGCTTGCGGAGACGACATTACGGGTAGAGGGAAGCATAGTAGGTGACAGAACGGGAAAAGGAGCTGTAGGTGGTGGTCATACAACTTATTCTGTTGGTTTATCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTTTCTGGAAAAGGGAGCTTTAAACCCCATCGTGATGGGTAG

mRNA sequence

ATGACAGTAACAGAATATGAGAAGAATTTCACAGAATTATCAAAGTATGCTAGCATTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTACGAACAGAGATCCGAACGACTGTGACAGCAAGTTCGGAGTGGGCTGAGTTCTCCAAGCTTGCGGAGACGACATTACGGGTAGAGGGAAGCATAGTAGGTGACAGAACGGGAAAAGGAGCTGTAGGTGGTGGTCATACAACTTATTCTGTTGGTTTATCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTTTCTGGAAAAGGGAGCTTTAAACCCCATCGTGATGGGTAG

Coding sequence (CDS)

ATGACAGTAACAGAATATGAGAAGAATTTCACAGAATTATCAAAGTATGCTAGCATTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTACGAACAGAGATCCGAACGACTGTGACAGCAAGTTCGGAGTGGGCTGAGTTCTCCAAGCTTGCGGAGACGACATTACGGGTAGAGGGAAGCATAGTAGGTGACAGAACGGGAAAAGGAGCTGTAGGTGGTGGTCATACAACTTATTCTGTTGGTTTATCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTTTCTGGAAAAGGGAGCTTTAAACCCCATCGTGATGGGTAG

Protein sequence

MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTLRVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG

Homology

[Close]

BLAST of Tan0012323 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MT+ EYEK +TELS YA+ ++ +E++RCKRFE+GLR EIRT VTA ++W +FSKL E  L
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +  + RF PGVS +G+FK   +G
Sbjct: 222 RVEKSL-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNG 276

[Close]

BLAST of Tan0012323 vs. NCBI nr
Match: KAA0042193.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 5.2e-19
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MTV EYEKN+TELSKYA+ ++ +E  RCKRF++GLR EIRT V AS+ W +F KL E  L
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +G +  F PGVS KG+FK    G
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSG 115

[Close]

BLAST of Tan0012323 vs. NCBI nr
Match: TYK26763.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 5.2e-19
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MTV EYEKN+TELSKYA+ ++ +E  RCKRF++GLR EIRT V AS+ W +F KL E  L
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +G +  F PGVS KG+FK    G
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSG 115

[Close]

BLAST of Tan0012323 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 9.0e-19
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MTV EYEK +TELSKYA+ ++ +E +RCKRFE+GLR EIRT VTA ++W +FSKL E  L
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +  + RF P VS +GSFK    G
Sbjct: 200 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSG 254

[Close]

BLAST of Tan0012323 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 9.0e-19
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MTV EYEK +TELSKYA+ ++ +E +RCKRFE+GLR EIRT VTA ++W +FSKL E  L
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +  + RF P VS +GSFK    G
Sbjct: 234 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSG 288

[Close]

BLAST of Tan0012323 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.7e-20
Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MT+ EYEK +TELS YA+ ++ +E++RCKRFE+GLR EIRT VTA ++W +FSKL E  L
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +  + RF PGVS +G+FK   +G
Sbjct: 222 RVEKSL-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNG 276

[Close]

BLAST of Tan0012323 vs. ExPASy TrEMBL
Match: A0A5A7TG44 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006940 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MTV EYEKN+TELSKYA+ ++ +E  RCKRF++GLR EIRT V AS+ W +F KL E  L
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +G +  F PGVS KG+FK    G
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSG 115

[Close]

BLAST of Tan0012323 vs. ExPASy TrEMBL
Match: A0A5D3DT34 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00550 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MTV EYEKN+TELSKYA+ ++ +E  RCKRF++GLR EIRT V AS+ W +F KL E  L
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +G +  F PGVS KG+FK    G
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSG 115

[Close]

BLAST of Tan0012323 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.3e-19
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MTV EYEK +TELSKYA+ ++ +E +RCKRFE+GLR EIRT VTA ++W +FSKL E  L
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +  + RF P VS +GSFK    G
Sbjct: 234 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSG 288

[Close]

BLAST of Tan0012323 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.3e-19
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MTVTEYEKNFTELSKYASIIVANEIDRCKRFEDGLRTEIRTTVTASSEWAEFSKLAETTL 60
           MTV EYEK +TELSKYA+ ++ +E +RCKRFE+GLR EIRT VTA ++W +FSKL E  L
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVEGSIVGDRTGKGAVGGGHTTYSVGLSRDRFQRGDNRRFTPGVSGKGSFKPHRDG 117
           RVE S+  +R  +        T+S  + R+R  +  + RF P VS +GSFK    G
Sbjct: 200 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSG 254

The following BLAST results are available for this feature:

BLAST of Tan0012323 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012323 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060484.1	1.8e-19	47.41	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0042193.1	5.2e-19	49.14	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK26763.1	5.2e-19	49.14	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0036813.1	9.0e-19	49.14	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	9.0e-19	49.14	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]

BLAST of Tan0012323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZM6	8.7e-20	47.41	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TG44	2.5e-19	49.14	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DT34	2.5e-19	49.14	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	4.3e-19	49.14	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	4.3e-19	49.14	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]

BLAST of Tan0012323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012323.1	Tan0012323.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016787	hydrolase activity