Tan0012318 (gene) Snake gourd v1

Overview
NameTan0012318
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG07: 30628003 .. 30628380 (+)
RNA-Seq ExpressionTan0012318
SyntenyTan0012318
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCGAAAGCGGTAGAAAATGCGAAGCTTTCTAAAGAAAGGAAATGGGCAGAAGCCGATGCAACGTTTTTGAAAAGACTAAGCTTAAACAAGAAGAGAACAGAGATCCCATCTTCTTCTTCTTCTTTTTTTTGGTTTGAAACATATAGAAATAATGAGATTATTAACTATTCGAGGCAAAGGTATTTGAGAAGCTACAGGTTTAGTGTGGAGAAGCAAAAACCAAAGCGATTTGATAAGGCAAAGAAGTGGTTGAACTCCAAATCAAGACTAACATCAACAACAACTTCTAATCATAATAATACTACTCTTTCGAACCATTCATGTACTTCCATTTTTAACTTCATCTTCTGCTGTAGATTTGATTATTCATAA

mRNA sequence

ATGGATTCGAAAGCGGTAGAAAATGCGAAGCTTTCTAAAGAAAGGAAATGGGCAGAAGCCGATGCAACGTTTTTGAAAAGACTAAGCTTAAACAAGAAGAGAACAGAGATCCCATCTTCTTCTTCTTCTTTTTTTTGGTTTGAAACATATAGAAATAATGAGATTATTAACTATTCGAGGCAAAGGTATTTGAGAAGCTACAGGTTTAGTGTGGAGAAGCAAAAACCAAAGCGATTTGATAAGGCAAAGAAGTGGTTGAACTCCAAATCAAGACTAACATCAACAACAACTTCTAATCATAATAATACTACTCTTTCGAACCATTCATGTACTTCCATTTTTAACTTCATCTTCTGCTGTAGATTTGATTATTCATAA

Coding sequence (CDS)

ATGGATTCGAAAGCGGTAGAAAATGCGAAGCTTTCTAAAGAAAGGAAATGGGCAGAAGCCGATGCAACGTTTTTGAAAAGACTAAGCTTAAACAAGAAGAGAACAGAGATCCCATCTTCTTCTTCTTCTTTTTTTTGGTTTGAAACATATAGAAATAATGAGATTATTAACTATTCGAGGCAAAGGTATTTGAGAAGCTACAGGTTTAGTGTGGAGAAGCAAAAACCAAAGCGATTTGATAAGGCAAAGAAGTGGTTGAACTCCAAATCAAGACTAACATCAACAACAACTTCTAATCATAATAATACTACTCTTTCGAACCATTCATGTACTTCCATTTTTAACTTCATCTTCTGCTGTAGATTTGATTATTCATAA

Protein sequence

MDSKAVENAKLSKERKWAEADATFLKRLSLNKKRTEIPSSSSSFFWFETYRNNEIINYSRQRYLRSYRFSVEKQKPKRFDKAKKWLNSKSRLTSTTTSNHNNTTLSNHSCTSIFNFIFCCRFDYS
Homology
BLAST of Tan0012318 vs. NCBI nr
Match: XP_023006822.1 (uncharacterized protein LOC111499491 [Cucurbita maxima])

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-24
Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 0

Query: 1   MDSKAVENAKLSKERKWAEADATFLKRLSLNKKRTEIPSSS---SSFFWFETYRNNEIIN 60
           MD K V +AKL  + KWAEADATFL+RLSLNK  TEI SSS   SS   FET RNNEI  
Sbjct: 253 MDIKGVGSAKLCNQNKWAEADATFLQRLSLNKNMTEISSSSSHCSSLLGFETNRNNEIFK 312

Query: 61  YSRQRYLRSYRFSVEKQKPKRFDKAKKWLNSKSRLTSTTTSNHNNTTLSNHSCTSIFNFI 120
           YSRQR+LRSY FSVE++K KRF KA+KW N KSR  ST+++N     +   S   I NF+
Sbjct: 313 YSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRTKSTSSNN-----VGKSSYNGILNFM 370

BLAST of Tan0012318 vs. NCBI nr
Match: KAG6605255.1 (hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 5.8e-24
Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 0

Query: 1   MDSKAVENAKLSKERKWAEADATFLKRLSLNKKRTEIPSSS---SSFFWFETYRNNEIIN 60
           MD K VE+AKL  + KWAEADATFL+RLSLNK  TEI S S   SS   FET RNNEI  
Sbjct: 23  MDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMTEISSYSLHCSSLLGFETNRNNEIFK 82

Query: 61  YSRQRYLRSYRFSVEKQKPKRFDKAKKWLNSKSRLTSTTTSNHNNTTLSNHSCTSIFNFI 120
           YSRQR+LRSY FSVE++K KRF KA+KW N KSR  ST+++N     +   S   IF F+
Sbjct: 83  YSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRPKSTSSNN-----VGKSSYNGIFKFM 140

BLAST of Tan0012318 vs. NCBI nr
Match: KGN62030.1 (hypothetical protein Csa_006081 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-09
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 12  SKERKWAEADATFLKRLSLNK---------KRTEIPSSSSSFFWFETYRNNEIINYSRQR 71
           SK++KWAEADA FL++LSLNK         K+ E    SSS F FE YR+N+IINYSRQR
Sbjct: 15  SKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQR 74

Query: 72  YLRSYRFSVEK--------QKPKRFDKAKKWLNSKS 91
           YLRSY+F+ +         QK   F+K   +   KS
Sbjct: 75  YLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKS 110

BLAST of Tan0012318 vs. ExPASy TrEMBL
Match: A0A6J1KWW2 (uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 0

Query: 1   MDSKAVENAKLSKERKWAEADATFLKRLSLNKKRTEIPSSS---SSFFWFETYRNNEIIN 60
           MD K V +AKL  + KWAEADATFL+RLSLNK  TEI SSS   SS   FET RNNEI  
Sbjct: 253 MDIKGVGSAKLCNQNKWAEADATFLQRLSLNKNMTEISSSSSHCSSLLGFETNRNNEIFK 312

Query: 61  YSRQRYLRSYRFSVEKQKPKRFDKAKKWLNSKSRLTSTTTSNHNNTTLSNHSCTSIFNFI 120
           YSRQR+LRSY FSVE++K KRF KA+KW N KSR  ST+++N     +   S   I NF+
Sbjct: 313 YSRQRFLRSYTFSVEEKKTKRFGKARKWFNLKSRTKSTSSNN-----VGKSSYNGILNFM 370

BLAST of Tan0012318 vs. ExPASy TrEMBL
Match: A0A0A0LJK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 12  SKERKWAEADATFLKRLSLNK---------KRTEIPSSSSSFFWFETYRNNEIINYSRQR 71
           SK++KWAEADA FL++LSLNK         K+ E    SSS F FE YR+N+IINYSRQR
Sbjct: 15  SKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQR 74

Query: 72  YLRSYRFSVEK--------QKPKRFDKAKKWLNSKS 91
           YLRSY+F+ +         QK   F+K   +   KS
Sbjct: 75  YLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKS 110

BLAST of Tan0012318 vs. ExPASy TrEMBL
Match: A0A5B7C6D7 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_045856 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 0

Query: 16  KWAEADATFLKRLSLNKKRTEIPSSSSSFFW---FETYRNNEIINY--SRQRYLRSYRFS 75
           +WAEAD  FL+ +S+NK+R +I SSS++        T  ++  I+Y  SRQRYLRSY FS
Sbjct: 30  EWAEADKEFLRMVSMNKERDQISSSSATATARGPTTTNCHDREISYACSRQRYLRSYTFS 89

Query: 76  VEKQKPKRFDKAKKWLNSKSRLTSTTTSNHNNTTLSNHSCT---SIFNFIFCC 121
              +K     ++KKWL  K          HNN+  S  SC+   ++F F+F C
Sbjct: 90  ---RKQTVSQRSKKWLKDK----------HNNSKDSGGSCSFLDAVFKFLFSC 129

BLAST of Tan0012318 vs. ExPASy TrEMBL
Match: A0A2N9IEQ4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50526 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-04
Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 0

Query: 1   MDSKAVENAKLSKERKWAEADATFLKRLSLNKKRTE------IPSSSSSFFWFETYRNNE 60
           +D+ A  N    K  +W E+DA FL+++S+ KKR E      I + S  + + E+Y    
Sbjct: 11  LDAHAPVNNSFVKLYQWPESDAEFLRKVSMEKKREEGLLSSLIDNDSEKYSYHESY---- 70

Query: 61  IINYSRQRYLRSYRFSVEKQKPKRFDKAKKWLNSKSRLTSTTTSNHNNTTLSNHSCTS-- 120
               SRQR+LRSY FS  K+K    +K KKWL  K            N + S+ SC S  
Sbjct: 71  ---VSRQRFLRSYTFS--KKKETAAEKTKKWLKEK-----------QNNSGSSGSCNSFL 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023006822.14.5e-2459.35uncharacterized protein LOC111499491 [Cucurbita maxima][more]
KAG6605255.15.8e-2459.35hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62030.12.4e-0948.96hypothetical protein Csa_006081 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1KWW22.2e-2459.35uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491... [more]
A0A0A0LJK11.2e-0948.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1[more]
A0A5B7C6D74.2e-0439.82Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_045856... [more]
A0A2N9IEQ45.5e-0435.38Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50526 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35304:SF3SUBFAMILY NOT NAMEDcoord: 5..120
NoneNo IPR availablePANTHERPTHR35304OS05G0120300 PROTEIN-RELATEDcoord: 5..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012318.1Tan0012318.1mRNA