Tan0012311 (gene) Snake gourd v1

Overview
NameTan0012311
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRoot meristem growth factor
LocationLG07: 20299043 .. 20300093 (-)
RNA-Seq ExpressionTan0012311
SyntenyTan0012311
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGCTTCCATGCAAACGTATCCTCATCCTCATTCTCGTCCTTCTTTGTTGTTTCTCAAACACGACTTTTGGTATATTTCTTTATCTATAATTTTTTTGTGTGTGTGTGTGTTTTTGAGTCTTGGTTTAATCAACATATTAATTAAAATGATTTCAAGAGATTAGATTGAATTTTGTATTTTGAACTTCAGGTTAACTCTAACGATATTAATGGAAGGTTATGATAAATTGGAATAAGTTTTGTGGTTTGCTCTCACCTTTCATTTTCTTCGAGTTTTAAAATATGAATTAAGTCTTACAATTTTCCTTTTTCTTTTATCAATATCCCATTATGTTCTTTTTAATTATGAAATACATGTTAATTATCTATATATATATATATAATTTTCTCTGGTGCAATATCTTGAATGGTACGCATATAAACTAGATGCATATATTTATTATTTGAAAAAAATTGAAACGAGTGTACCATACATAGATATATCTATGACAACATATATTTACTACATATATGTTTTAAAACTTTCCTGAGACGACTATGTGAACTAAAAAAAAAATGTATGATTTTTTATATTTTTTAAAACGATTAAATTTGTTATCAGTTGACTTAATTTTATACTCTACTTTCTAGAATCCTACTTCAAAAAGAAAGATATCTAACAAGTAAGAAAACAAACGAAAAAGATTAACCTATATTCAAAAGATTATTTTTTTTAAAGAAAAAACTACAGAAACACTTTTAATTCTTTATCAAATCTCATAAAGAACCTCACTCTACGAAGTTCTCTTCCTTCTCTTTGAAAATTTGAATTATATATACAAAGTTCAAATCGAATTAAATCAAATCGCTGATAGGAATTTCGCTATTGATTTGTGGTTTTGCAGCAGCAAGAAGTTTGGGAGTGCCTCAGATAAAGAATGATGATCACAATCAGAAAGCAGATGATGATCTTAAAATTCATGATGAAGAACATTTTACAAACACTGATGATTTGGTGGCTATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATCCACAACTGA

mRNA sequence

ATGGCTGTGCTTCCATGCAAACGTATCCTCATCCTCATTCTCGTCCTTCTTTGTTGTTTCTCAAACACGACTTTTGCAGCAAGAAGTTTGGGAGTGCCTCAGATAAAGAATGATGATCACAATCAGAAAGCAGATGATGATCTTAAAATTCATGATGAAGAACATTTTACAAACACTGATGATTTGGTGGCTATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATCCACAACTGA

Coding sequence (CDS)

ATGGCTGTGCTTCCATGCAAACGTATCCTCATCCTCATTCTCGTCCTTCTTTGTTGTTTCTCAAACACGACTTTTGCAGCAAGAAGTTTGGGAGTGCCTCAGATAAAGAATGATGATCACAATCAGAAAGCAGATGATGATCTTAAAATTCATGATGAAGAACATTTTACAAACACTGATGATTTGGTGGCTATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATCCACAACTGA

Protein sequence

MAVLPCKRILILILVLLCCFSNTTFAARSLGVPQIKNDDHNQKADDDLKIHDEEHFTNTDDLVAMDYTPASKKPPIHN
Homology
BLAST of Tan0012311 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-21
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 7  KRILILILVLLCCFSNTTFAARSLGVPQIKNDDHNQKADDDLKIHDEEHFTNTDDLVAMD 66
          KR+L+L+LVLLC FSN   A RSLGVPQIK DDH  K +DDL +H+EEHF++TDDL AMD
Sbjct: 5  KRVLVLVLVLLCSFSNKVIATRSLGVPQIKKDDHKLKGNDDLAVHEEEHFSSTDDLGAMD 64

Query: 67 YTPASKKPPIHN 79
          YTPASKKPPIHN
Sbjct: 65 YTPASKKPPIHN 76

BLAST of Tan0012311 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 5.1e-18
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 1  MAVLPCKRIL---ILILVLLCCFSNTTFAARSLGVPQIKNDDHNQKA----DDDLKIH-- 60
          MA+LPCKRIL   +LILVLLCCFSN   AARS+GV ++KN+  N+K     DD  K+H  
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEH-FTNTDDLVAMDYTPASKKPPIHN 79
          DEEH F++TDDL AMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

BLAST of Tan0012311 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 8.7e-18
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 5  PCKR---ILILILVLLCCFSNTTFAARSL--GVPQIKNDDHNQKADDDLKIHDEEHFTNT 64
          PCKR   +L+++LVLL CFSNT   ARSL  GVPQIK DDH+ K D DL + DEEHF +T
Sbjct: 3  PCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFMST 62

Query: 65 DDLVAMDYTPASKKPPIHN 79
           DLVAMDYT ASKKPPIHN
Sbjct: 63 VDLVAMDYTQASKKPPIHN 81

BLAST of Tan0012311 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-15
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 1  MAVLPCKRILI---LILVLLCCFSNTTFAARSLGVPQIKNDDHNQKA-----DDDLKIH- 60
          MA+LPCKRILI   LIL+LL CFSNT  AARS+GV ++KN+   ++      DD  K+H 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 --DEEH-FTNTDDLVAMDYTPASKKPPIHN 79
            DEEH F++TDDL AMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

BLAST of Tan0012311 vs. NCBI nr
Match: KAB1210353.1 (hypothetical protein CJ030_MR6G024140 [Morella rubra])

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-07
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 2  AVLPCKRILILILVLLCCFSNTTFAARSLGVPQIKNDDHNQKADDDLKIHDEEHFTNTDD 61
          AVLPCKR++++ LV+LC FSN   AARSL               D     ++    ++DD
Sbjct: 4  AVLPCKRLVLIALVMLCFFSNAARAARSLRAVASNEISQMSHDQDPFSPKEDRVLADSDD 63

Query: 62 LVAMDYTPASKKPPIHN 79
          LV +DYTPA +KPPIHN
Sbjct: 64 LVTVDYTPARRKPPIHN 80

BLAST of Tan0012311 vs. ExPASy TrEMBL
Match: A0A0A0LMV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.5e-18
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 1  MAVLPCKRIL---ILILVLLCCFSNTTFAARSLGVPQIKNDDHNQKA----DDDLKIH-- 60
          MA+LPCKRIL   +LILVLLCCFSN   AARS+GV ++KN+  N+K     DD  K+H  
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEH-FTNTDDLVAMDYTPASKKPPIHN 79
          DEEH F++TDDL AMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

BLAST of Tan0012311 vs. ExPASy TrEMBL
Match: A0A5A7TWX6 (Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002040 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 1  MAVLPCKRILI---LILVLLCCFSNTTFAARSLGVPQIKNDDHNQKA-----DDDLKIH- 60
          MA+LPCKRILI   LIL+LL CFSNT  AARS+GV ++KN+   ++      DD  K+H 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 --DEEH-FTNTDDLVAMDYTPASKKPPIHN 79
            DEEH F++TDDL AMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

BLAST of Tan0012311 vs. ExPASy TrEMBL
Match: A0A6A1VC82 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024140 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 2  AVLPCKRILILILVLLCCFSNTTFAARSLGVPQIKNDDHNQKADDDLKIHDEEHFTNTDD 61
          AVLPCKR++++ LV+LC FSN   AARSL               D     ++    ++DD
Sbjct: 4  AVLPCKRLVLIALVMLCFFSNAARAARSLRAVASNEISQMSHDQDPFSPKEDRVLADSDD 63

Query: 62 LVAMDYTPASKKPPIHN 79
          LV +DYTPA +KPPIHN
Sbjct: 64 LVTVDYTPARRKPPIHN 80

BLAST of Tan0012311 vs. ExPASy TrEMBL
Match: A0A6J5WGE6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS13997 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.7e-07
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1  MAVLPCKRILILILVLLCCFSNTTFAARSLGVPQIKNDDHNQKA---DDDLKIHDEEHF- 60
          MA +P K +L++  +LL CF + T   RSLGV    +DD +QK+    D  K  +E+H  
Sbjct: 1  MAAIPFKHLLLVAFILL-CFISITAEGRSLGVVSKSSDDGHQKSHDLHDPFKQKEEDHEG 60

Query: 61 ---TNTDDLVAMDYTPASKKPPIHN 79
               ++DL+AMDYTPASKKPPIHN
Sbjct: 61 LLPDESNDLLAMDYTPASKKPPIHN 84

BLAST of Tan0012311 vs. ExPASy TrEMBL
Match: A0A2N9HRC3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42165 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.7e-07
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0

Query: 1  MAVLPCKRILILILVLLCCFSNTTFAARSLGVPQIKNDDHNQKADDDLKIHDEEHFTNTD 60
          MA +PCKR+++++L++LC FS T    R L  P       +Q   D+L    EE    +D
Sbjct: 1  MAAVPCKRLILVVLIMLCLFSTTAKGGRDLREP----SKESQMNHDELFPVKEERVLESD 60

Query: 61 DLVAMDYTPASKKPPIHN 79
          +L+A DYTPA +KPPIHN
Sbjct: 61 ELLAADYTPARRKPPIHN 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571377.12.2e-2173.61hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62102.15.1e-1865.91hypothetical protein Csa_006036 [Cucumis sativus][more]
KAG6605281.18.7e-1868.35hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0045905.14.0e-1562.22Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684... [more]
KAB1210353.12.4e-0745.45hypothetical protein CJ030_MR6G024140 [Morella rubra][more]
Match NameE-valueIdentityDescription
A0A0A0LMV62.5e-1865.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1[more]
A0A5A7TWX62.0e-1562.22Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=119469... [more]
A0A6A1VC821.1e-0745.45Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024140 PE=4 SV=1[more]
A0A6J5WGE65.7e-0747.06Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS13997 PE=4 S... [more]
A0A2N9HRC35.7e-0743.59Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42165 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039337Protein GOLVEN 2PANTHERPTHR33743FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR33743:SF16ROOT MERISTEM GROWTH FACTOR 9coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012311.1Tan0012311.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008083 growth factor activity