Tan0012248 (gene) Snake gourd v1

Overview


Name	Tan0012248
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Eukaryotic translation initiation factor 4C
Location	LG02: 3531085 .. 3532515 (+)
RNA-Seq Expression	Tan0012248
Synteny	Tan0012248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTCTGTTTGTTACAGCTGTAATATTAGTCTATTCTTTTTATTCTTTATTCTTTACATTTACTCGTGTGTGTATAAAGAGGTAGCCAACCCTCAGGCATTCGCATTGGAAATAGTGAATAGTCTTCTCCTCAGACAAGGTACTCTTCGGTTCTTCTTTTCCTTCAAATTCATTAACATATATATCCGTGCATGTCGATTTTTGTTCGGTTGTCTTTTCTTGTGCCGAAGAAGATGATTAGTTCATCAATTCGAGTGAATGCTTTGAATTTTCGCTGTGAATTAGCAGTTTTCGACTTCGTGCCCTTTAATTGTTTGCATCGGATGTGAAAATGGTGAATTTCAATGAGTACTTGATGCATTTTCTACTTTCACTGCCCTCTTTTTCGTCCAATTTGATTGTGTAAAAAGGTTATAGTAATAAGAGCTTTATCAGAAATCTGAATGAAAATTATCTGTTGTGCTACTTAAACTTAAACCCCACATTGTTATATTTGATGATTGGTTACTGGTTATATGCATACACGATCCTACCCAAGTGTAGTCATAATAACTCATAAGTGTTGAATGTCTCTTTTACCTTTTTTGGCAAATCTATTTTGATATTCATGATTAATTCAGATTTTGCTACATAGTTGTTTGTTTACCAAACAAACACTCTTTTTTTTTCTAGCTTAACTAGTGAAGCTATGTTTCTGGGTAGCTAATTTTCCATTATTTTGATAGTATAATCTGCAATCATGCCAAAGAAGGGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAGTATGCCCAAGTACTCCGGAGGCTCGGTAATGGTCATTGTGTAGCAATGTGTATCGACGGGACTAAACGTCTTTGCCATATTGGGGAAAAAATGCACAACAAAGTTTGGATTGCAGCTGGGGATATCATACTTGTTGGTCTTCGTGACAATCAAGACGACAAGGCTGATGTGATTCTTAAATACATGTCTGATGAAGTTAGGCTTTTGAAAGGATACAGTGAGCTACCTGAGAATACACGTCTCAAAGAGGGTATCGTTGGGGGTATGGATGAGGACAAAGATTTTGATATCGAGTTTATGGACGAAGATTTTGATTAGATTTAGATGTTAGTCCTCTGTTTCGAACTATATATTAGTAAAGAAATAACTGTACTATAGGGGGGTGAAGTTGTATTAACGAATTCCATTTCATAATAGCCTTGAGAATGCAGATGGAATCGGTTCTATTCCATGTAACATCTGTTCTTTTATACTGTATGATTGCTTATGCCCCTTCTGGCCAATAATACTTCTATTGTATTACATACATCTTTAAAGAGAAGCCAACTCTTTATGACTTTACCCAATTGCTGAGATGGTCTTGTACCATTCTCTGTGACCTTTTCTCTTATCTTAAAGTTAGTAAATAGATATCCATATTGAGGAG

mRNA sequence

AAATTCTGTTTGTTACAGCTGTAATATTAGTCTATTCTTTTTATTCTTTATTCTTTACATTTACTCGTGTGTGTATAAAGAGGTAGCCAACCCTCAGGCATTCGCATTGGAAATAGTGAATAGTCTTCTCCTCAGACAAGTATAATCTGCAATCATGCCAAAGAAGGGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAGTATGCCCAAGTACTCCGGAGGCTCGGTAATGGTCATTGTGTAGCAATGTGTATCGACGGGACTAAACGTCTTTGCCATATTGGGGAAAAAATGCACAACAAAGTTTGGATTGCAGCTGGGGATATCATACTTGTTGGTCTTCGTGACAATCAAGACGACAAGGCTGATGTGATTCTTAAATACATGTCTGATGAAGTTAGGCTTTTGAAAGGATACAGTGAGCTACCTGAGAATACACGTCTCAAAGAGGGTATCGTTGGGGGTATGGATGAGGACAAAGATTTTGATATCGAGTTTATGGACGAAGATTTTGATTAGATTTAGATGTTAGTCCTCTGTTTCGAACTATATATTAGTAAAGAAATAACTGTACTATAGGGGGGTGAAGTTGTATTAACGAATTCCATTTCATAATAGCCTTGAGAATGCAGATGGAATCGGTTCTATTCCATGTAACATCTGTTCTTTTATACTGTATGATTGCTTATGCCCCTTCTGGCCAATAATACTTCTATTGTATTACATACATCTTTAAAGAGAAGCCAACTCTTTATGACTTTACCCAATTGCTGAGATGGTCTTGTACCATTCTCTGTGACCTTTTCTCTTATCTTAAAGTTAGTAAATAGATATCCATATTGAGGAG

Coding sequence (CDS)

ATGCCAAAGAAGGGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAGTATGCCCAAGTACTCCGGAGGCTCGGTAATGGTCATTGTGTAGCAATGTGTATCGACGGGACTAAACGTCTTTGCCATATTGGGGAAAAAATGCACAACAAAGTTTGGATTGCAGCTGGGGATATCATACTTGTTGGTCTTCGTGACAATCAAGACGACAAGGCTGATGTGATTCTTAAATACATGTCTGATGAAGTTAGGCTTTTGAAAGGATACAGTGAGCTACCTGAGAATACACGTCTCAAAGAGGGTATCGTTGGGGGTATGGATGAGGACAAAGATTTTGATATCGAGTTTATGGACGAAGATTTTGATTAG

Protein sequence

MPKKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDFDIEFMDEDFD

Homology

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BLAST of Tan0012248 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-44
Identity = 94/121 (77.69%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 4   KGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLR 63
           K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLR
Sbjct: 23  KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR 82

Query: 64  DNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGI-VGGMDEDKDFD---IEFMDEDF 121
           D QDDKADVILK M DE RLLK Y ELP+NTRL EGI  GG+DE+ D     IEF DED 
Sbjct: 83  DYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIGAGGLDEEMDTANDYIEFEDEDI 142

[Close]

BLAST of Tan0012248 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 87/121 (71.90%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 4   KGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLR 63
           K ELVFKEDGQEYAQV R LGNG C A+C+DGTKRLCHI  KMH KVWIAAGDI+LVGLR
Sbjct: 23  KRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLR 82

Query: 64  DNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGI-VGGMDE---DKDFDIEFMDEDF 121
           D QDDKADVILKYM+DE RLLK Y ELP+  RL EG+ V G +E   D D+ I+F DED 
Sbjct: 83  DYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVDGPEEGEGDSDY-IQFEDEDI 142

[Close]

BLAST of Tan0012248 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 9.0e-33
Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQV++ LGNG   AMC DG KRLCHI  K+  KVWI   DIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDF---DIEFMDEDF 121
           RD QD+KADVILKY +DE R LK Y ELPE+ ++ E    G  +D +    DI   DED 
Sbjct: 82  RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 141

[Close]

BLAST of Tan0012248 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 141.0 bits (354), Expect = 9.0e-33
Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQV++ LGNG   AMC DG KRLCHI  K+  KVWI   DIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDF---DIEFMDEDF 121
           RD QD+KADVILKY +DE R LK Y ELPE+ ++ E    G  +D +    DI   DED 
Sbjct: 82  RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 141

[Close]

BLAST of Tan0012248 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 141.0 bits (354), Expect = 9.0e-33
Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQV++ LGNG   AMC DG KRLCHI  K+  KVWI   DIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDF---DIEFMDEDF 121
           RD QD+KADVILKY +DE R LK Y ELPE+ ++ E    G  +D +    DI   DED 
Sbjct: 82  RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 141

[Close]

BLAST of Tan0012248 vs. NCBI nr
Match: XP_022135622.1 (eukaryotic translation initiation factor 1A-like [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 2.6e-45
Identity = 98/122 (80.33%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDK----DFDIEFMDED 121
           R+ QDDKADVILKYM DE RLLK YSELPENTRL EGIVGGMD+D     D  IEF DED
Sbjct: 82  REYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. NCBI nr
Match: XP_004144524.1 (eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis melo] >XP_038888593.1 eukaryotic translation initiation factor 1A-like [Benincasa hispida] >KAA0059115.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa] >KGN43463.1 hypothetical protein Csa_020194 [Cucumis sativus] >TYK21620.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 2.6e-45
Identity = 98/122 (80.33%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDK----DFDIEFMDED 121
           RD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVGGMD+D     D  IEF DED
Sbjct: 82  RDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. NCBI nr
Match: XP_022930658.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988995.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023529812.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >KAG6589133.1 hypothetical protein SDJN03_17698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.2 bits (487), Expect = 2.6e-45
Identity = 98/122 (80.33%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDK----DFDIEFMDED 121
           RD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVGGMD+D     D  IEF DED
Sbjct: 82  RDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. NCBI nr
Match: XP_018458129.1 (PREDICTED: eukaryotic translation initiation factor 1A [Raphanus sativus] >XP_018458130.1 PREDICTED: eukaryotic translation initiation factor 1A [Raphanus sativus] >XP_018458131.1 PREDICTED: eukaryotic translation initiation factor 1A [Raphanus sativus])

HSP 1 Score: 191.4 bits (485), Expect = 4.4e-45
Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K EL+FKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDI+LVGL
Sbjct: 22  EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDFD----IEFMDED 121
           RD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG +DED D +    +EF DED
Sbjct: 82  RDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDEDDDNNVDDYVEFEDED 141

[Close]

BLAST of Tan0012248 vs. NCBI nr
Match: XP_009124264.1 (eukaryotic translation initiation factor 1A [Brassica rapa] >XP_009124265.1 eukaryotic translation initiation factor 1A [Brassica rapa] >XP_013631214.1 PREDICTED: eukaryotic translation initiation factor 1A [Brassica oleracea var. oleracea] >XP_013631215.1 PREDICTED: eukaryotic translation initiation factor 1A [Brassica oleracea var. oleracea] >XP_013686782.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_013686783.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_013721170.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_013721171.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_013721172.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_013721173.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_013721174.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_013721175.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_022574185.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_022574186.1 eukaryotic translation initiation factor 1A [Brassica napus] >XP_022574187.1 eukaryotic translation initiation factor 1A [Brassica napus] >KAF2605558.1 hypothetical protein F2Q70_00027173 [Brassica cretica] >KAF8107354.1 hypothetical protein N665_0123s0045 [Sinapis alba] >KAG2287352.1 hypothetical protein Bca52824_046956 [Brassica carinata] >VDD10962.1 unnamed protein product [Brassica oleracea] >KAF3554178.1 hypothetical protein F2Q69_00015925 [Brassica cretica])

HSP 1 Score: 190.3 bits (482), Expect = 9.8e-45
Identity = 95/122 (77.87%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K EL+FKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDI+LVGL
Sbjct: 22  EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDFD----IEFMDED 121
           RD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG +DED D      +EF DED
Sbjct: 82  RDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDEDDDNAADDYVEFEDED 141

[Close]

BLAST of Tan0012248 vs. ExPASy TrEMBL
Match: A0A5A7UZV0 (Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00180 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 98/122 (80.33%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDK----DFDIEFMDED 121
           RD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVGGMD+D     D  IEF DED
Sbjct: 82  RDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. ExPASy TrEMBL
Match: A0A6J1JL52 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111486190 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 98/122 (80.33%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDK----DFDIEFMDED 121
           RD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVGGMD+D     D  IEF DED
Sbjct: 82  RDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. ExPASy TrEMBL
Match: A0A0A0K1Y5 (Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 98/122 (80.33%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDK----DFDIEFMDED 121
           RD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVGGMD+D     D  IEF DED
Sbjct: 82  RDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. ExPASy TrEMBL
Match: A0A6J1C384 (Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LOC111007531 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 98/122 (80.33%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDK----DFDIEFMDED 121
           R+ QDDKADVILKYM DE RLLK YSELPENTRL EGIVGGMD+D     D  IEF DED
Sbjct: 82  REYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. ExPASy TrEMBL
Match: A0A6J1EVW9 (Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC111437059 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 98/122 (80.33%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDK----DFDIEFMDED 121
           RD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVGGMD+D     D  IEF DED
Sbjct: 82  RDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 188.7 bits (478), Expect = 2.7e-48
Identity = 93/122 (76.23%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K EL+FKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDI+LVGL
Sbjct: 22  EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDFD----IEFMDED 121
           RD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG +++D D +    +EF DED
Sbjct: 82  RDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDNNDDDYVEFEDED 141

[Close]

BLAST of Tan0012248 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-47
Identity = 94/122 (77.05%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K EL+FKEDGQEYAQVLR LGNG C  MCIDG KRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDF----DIEFMDED 121
           RD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG +D+D D      IEF DED
Sbjct: 82  RDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDDDDDVVGEDYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-47
Identity = 94/122 (77.05%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K EL+FKEDGQEYAQVLR LGNG C  MCIDG KRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDF----DIEFMDED 121
           RD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG +D+D D      IEF DED
Sbjct: 82  RDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDDDDDVVGEDYIEFEDED 141

[Close]

BLAST of Tan0012248 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-46
Identity = 87/107 (81.31%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 3   KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGL 62
           +K EL+FKEDGQEYAQVLR LGNG C  MCIDG KRLCHI  KMH KVWIAAGDIILVGL
Sbjct: 22  EKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGL 81

Query: 63  RDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKD 110
           RD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG +D+D D
Sbjct: 82  RDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDDDDD 128

The following BLAST results are available for this feature:

BLAST of Tan0012248 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	1.0e-44	77.69	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	1.1e-41	71.90	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	9.0e-33	60.33	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	9.0e-33	60.33	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	9.0e-33	60.33	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of Tan0012248 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135622.1	2.6e-45	80.33	eukaryotic translation initiation factor 1A-like [Momordica charantia]	[more]
XP_004144524.1	2.6e-45	80.33	eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PR...	[more]
XP_022930658.1	2.6e-45	80.33	eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988...	[more]
XP_018458129.1	4.4e-45	77.87	PREDICTED: eukaryotic translation initiation factor 1A [Raphanus sativus] >XP_01...	[more]
XP_009124264.1	9.8e-45	77.87	eukaryotic translation initiation factor 1A [Brassica rapa] >XP_009124265.1 euka...	[more]

BLAST of Tan0012248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZV0	1.3e-45	80.33	Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1JL52	1.3e-45	80.33	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0K1Y5	1.3e-45	80.33	Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G...	[more]
A0A6J1C384	1.3e-45	80.33	Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1EVW9	1.3e-45	80.33	Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Tan0012248 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	2.7e-48	76.23	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	1.3e-47	77.05	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	1.3e-47	77.05	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	2.5e-46	81.31	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 9..91 e-value: 4.9E-37 score: 139.0
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 4..119
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 2..91 score: 14.567675
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 14..90 e-value: 7.17382E-34 score: 110.691
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 13..74 e-value: 1.1E-18 score: 66.8
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 3..77 score: 25.485142
None	No IPR available	GENE3D	2.40.50.140		coord: 2..120 e-value: 5.3E-39 score: 134.9
None	No IPR available	PANTHER	PTHR21668:SF12	BNAC03G44260D PROTEIN	coord: 4..119
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 5..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012248.1	Tan0012248.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding