Tan0012223 (gene) Snake gourd v1

Overview


Name	Tan0012223
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	conserved peptide upstream open reading frame 37
Location	LG01: 5096109 .. 5096422 (-)
RNA-Seq Expression	Tan0012223
Synteny	Tan0012223

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGCCAAGCTGCAACCCAGACGAGATTTCGGGCATTGAAACATGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGTTTTCAACCTTTGCAGAATTGTCAGGTTCGTCAACTCAGTTTCTGCCTCCTTGTTTTTCTTGTTGATTAATAATTGAATTAATTCTACATTATTTTATCCGGATCTGTCTGTATCTATCTTTCCCTGTAATTTGCTCATTGAATACCATGATGAAACTTTGGTATTTTCTGTTTCAGGCCGAGTATTTTCGACAGTTGCTTAAGCCTGTCACGTAG

mRNA sequence

ATGGTGTGCCAAGCTGCAACCCAGACGAGATTTCGGGCATTGAAACATGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGTTTTCAACCTTTGCAGAATTGTCAGGCCGAGTATTTTCGACAGTTGCTTAAGCCTGTCACGTAG

Coding sequence (CDS)

ATGGTGTGCCAAGCTGCAACCCAGACGAGATTTCGGGCATTGAAACATGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGTTTTCAACCTTTGCAGAATTGTCAGGCCGAGTATTTTCGACAGTTGCTTAAGCCTGTCACGTAG

Protein sequence

MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT

Homology

[Close]

BLAST of Tan0012223 vs. NCBI nr
Match: KAG7014898.1 (hypothetical protein SDJN02_22529 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 5.2e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 53

[Close]

BLAST of Tan0012223 vs. NCBI nr
Match: XP_016902954.1 (PREDICTED: uncharacterized protein LOC103501164 isoform X2 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRQLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 53

[Close]

BLAST of Tan0012223 vs. NCBI nr
Match: KAG7030896.1 (hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1   MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
           MVCQAATQTRFR LKHENGIAGKPTIIVRVIACFQPLQNCQAEYFR LLKPVT
Sbjct: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 139

[Close]

BLAST of Tan0012223 vs. NCBI nr
Match: KAG6576874.1 (Transcription factor basic helix-loop-helix 143, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKP 52
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKP
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKP 51

[Close]

BLAST of Tan0012223 vs. NCBI nr
Match: XP_016901746.1 (PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFR LLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Tan0012223 vs. ExPASy TrEMBL
Match: A0A0A0KVT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113180 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.3e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQA+YFRQLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAKYFRQLLKPVT 53

[Close]

BLAST of Tan0012223 vs. ExPASy TrEMBL
Match: A0A1S4E402 (uncharacterized protein LOC103501164 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501164 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.5e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRQLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 53

[Close]

BLAST of Tan0012223 vs. ExPASy TrEMBL
Match: A0A0A0K458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.2e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFR LLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Tan0012223 vs. ExPASy TrEMBL
Match: A0A1S4E0J3 (uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495379 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.2e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFR LLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Tan0012223 vs. ExPASy TrEMBL
Match: W9R7U4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Tan0012223 vs. TAIR 10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37 )

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQ+A QTRFR LKHE+GI G   I+VRVIACFQPLQ+CQAEYFRQLLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITG--NIVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of Tan0012223 vs. TAIR 10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43 )

HSP 1 Score: 82.8 bits (203), Expect = 9.1e-17
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHE-NGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MV Q+A QTRFR  K+E NG + +PTI+VRVIACFQP+ NCQAEYFR +LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of Tan0012223 vs. TAIR 10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40 )

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-16
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 54
          MVCQ+  +TRFR LK+E G A + TI+VRVI C+QP+ NCQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

[Close]

BLAST of Tan0012223 vs. TAIR 10
Match: AT1G29951.1 (conserved peptide upstream open reading frame 35 )

HSP 1 Score: 40.4 bits (93), Expect = 5.2e-04
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 31 IACFQPLQNCQAEYFRQLLKPVT 54
          IA +Q +Q CQAEYFRQLLKPVT
Sbjct: 26 IANYQSVQVCQAEYFRQLLKPVT 48

The following BLAST results are available for this feature:

BLAST of Tan0012223 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0012223 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014898.1	5.2e-22	100.00	hypothetical protein SDJN02_22529 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_016902954.1	2.0e-21	98.11	PREDICTED: uncharacterized protein LOC103501164 isoform X2 [Cucumis melo]	[more]
KAG7030896.1	5.7e-21	96.23	hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6576874.1	7.5e-21	100.00	Transcription factor basic helix-loop-helix 143, partial [Cucurbita argyrosperma...	[more]
XP_016901746.1	1.3e-20	94.34	PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo]	[more]

BLAST of Tan0012223 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVT2	7.3e-22	98.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113180 PE=4 SV=1	[more]
A0A1S4E402	9.5e-22	98.11	uncharacterized protein LOC103501164 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0K458	6.2e-21	94.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1	[more]
A0A1S4E0J3	6.2e-21	94.34	uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
W9R7U4	1.1e-20	94.34	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1	[more]

BLAST of Tan0012223 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50011.1	4.4e-19	81.13	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	9.1e-17	70.37	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	2.0e-16	67.92	conserved peptide upstream open reading frame 40	[more]
AT1G29951.1	5.2e-04	78.26	conserved peptide upstream open reading frame 35	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281	BNAA02G34170D PROTEIN	coord: 1..53
None	No IPR available	PANTHER	PTHR35281:SF2	BNAA02G34170D PROTEIN	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012223.1	Tan0012223.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity