Tan0012198 (gene) Snake gourd v1

Overview
NameTan0012198
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H protein
LocationLG04: 17746425 .. 17748462 (+)
RNA-Seq ExpressionTan0012198
SyntenyTan0012198
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACCTGGAGAAACTTCCTGAAGAAGAGGACCTTTACTGGCGTCAAAGGTCGCACGAAGACTAGGTAAAATGGGGAGACCGAAATACCAAATGGTTCCACATTAGGGCATCCGCGAGGAAAAAACAGAACCACATTAAAGGTCTTTTCAACTCCTCGGGAGATTGGGTTACAAATGAGAGTGAGATAGGACAGTTGGCTACCGCTTACTTTGAAAATTTGTTTACTTCAAACCCGCAAGCACTTGAAGCAACTGAAAAAGTTATTGACATGATATCACCAACAAATGACAAGGAGACAAATTCTTCACTTTTAATGGATTTTACTAGGGATGAAATTGAGGGTGTCCTAAAGAGTATGAACCCTACTAAAGCTCCGGGGTCGGATGGAGTCCATGCGGGTTTCTACAAGGAATATTGGAGTATAGTCGGAGACAATATTACAGATCTGTCTAAGCTGTTTGAATGAGAATAGTGACCTACGAAAGTTGAACCACACTTGTTTAGTCCTAATCCCCAAAACTCAACATCCGAGTAAGATGGAGGATTTTCGACCAATTAGTCTGTGCAATGTGGTTTATAAGATAATCTCCAAATGTCTGGCTAATAGGTTAAAAAATGTCTTAAACCAAGTTATCTCCTTAGAGCAATCAACTTTCATCTCCGATAGGTTAATTTCTGATAATGCTCTTATTGGTTTTGAATGTTTGCACGCAATCAGAAGTAAACGCAAAGGAAAGATGGGATCAATAGCTATGAAACTCGACATGTGTAAGGCTTATGACAGGGTGGAATGGAACTATCTGCACAGGATAATGCTTCGTATGGGTTTTGATATGAACTGTGTTGAAACTGTCAGTTTCTCAATCTTGTTGAACGGTAGACCACAAGAGCCCTCTTACCCAAAAAGAGGTATGCGGCAGGGAGACCCTCTTTCTCCTTATCTATTTATACTGTGTGTTGAAGGTTTTTGTGCATTGCTTTATAGAGAACAAAGCCTTAAGAATTTCTGTGGATTAAAGATTAATTGTTTTTGTCCTATAATTTCACACATCTTCTATGCAGATGATAACATTATCTTCTTTAGGGCACACAATCAAGACATCCAAACAATCAAAGGCGTGTTGGACTGTTATGAACAGGCTTCGGGGCAGACAGTTAACTTTGAAAAATCAACCTTTGTGGTTAGTAAAAATACGAAGGCAAACATGGTAGAATTGATAAAGAGCACCTTCAAGGTTGATTGTAGAGATTCTTTGGGTTGTTATTTAGGACTCCCGTCTCAGACCTCCAAGCATAAGTCTCAAGTCTTTAGAACAATCAAAGATCGCATGTGGAAGGTGCTCCAGAGTTGGAAAGGTAAGTTTTTCTCTTATGGAGGGAGAGAGGCCCTTATTAAAGCAGTGGCTCAAGCCATTCCGGTGTATACGACGAGTTGTTTCAAGCTTCCTAAGAGTCTCTGTGCTGAACTGAATTCGATTTGCGCCAAATTTTGGTGGGGCGCTAACGAAAGAAGGCGAAAAATTCATTGGCAAAGCTAGACGAGACTGTGTATTCCCAAGGAGGCAAGGGGCATGGGTTTCAGAGACATACATTTGTTCAACCAGGCAATGTTGGCAAAGCAGGGCTGGCGTCTTCTTCGAAAGCCCGATAGTATTCTTTATCGACTGCTTAGGGGAAGATATTTTAAAACAGGAAATTTTCTAAAAGCAACTCTCGGTTCTAATCCATCTTTTACATGGCGTAGCATCCTTTGGGGTCAGGATTTGTTTAGAGAAGAGTACAGATGGAAGATTGGAAATGGATGTCAGATCAGTATATTTAATGATCCATGGCTCACGGTGGAAGGTCGGCAGCACCCGATGATGGTGAGTCCCGAACTGGCTCAAAGCACGATTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATCCGAAGGTGTTTCCAGGAAGATGATGTTGGTAATATTCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTTGGAAGTATAA

mRNA sequence

ATGGCGGACCTGGAGAAACTTCCTGAAGAAGAGGACCTTTACTGGCGTCAAAGCATCCTTTGGGGTCAGGATTTGTTTAGAGAAGAGTACAGATGGAAGATTGGAAATGGATGTCAGATCAGTATATTTAATGATCCATGGCTCACGGTGGAAGGTCGGCAGCACCCGATGATGGTGAGTCCCGAACTGGCTCAAAGCACGATTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATCCGAAGGTGTTTCCAGGAAGATGATGTTGGTAATATTCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTTGGAAGTATAA

Coding sequence (CDS)

ATGGCGGACCTGGAGAAACTTCCTGAAGAAGAGGACCTTTACTGGCGTCAAAGCATCCTTTGGGGTCAGGATTTGTTTAGAGAAGAGTACAGATGGAAGATTGGAAATGGATGTCAGATCAGTATATTTAATGATCCATGGCTCACGGTGGAAGGTCGGCAGCACCCGATGATGGTGAGTCCCGAACTGGCTCAAAGCACGATTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATCCGAAGGTGTTTCCAGGAAGATGATGTTGGTAATATTCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTTGGAAGTATAA

Protein sequence

MADLEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIVLEV
Homology
BLAST of Tan0012198 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 0

Query: 6   KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ 65
           KL       WR SILWG+DLF++ YRWK+GNG  I++ +DPWL  +G   P+     +  
Sbjct: 564 KLGARPSYAWR-SILWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRN 623

Query: 66  STIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
            ++  L++  G WD  K+R  F   +   ILQ P      +DEI+
Sbjct: 624 FSVAWLMEGRGRWDEIKVRESFIVSEADIILQTPLPSQDKDDEII 667

BLAST of Tan0012198 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 15   WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKE 74
            WR SI+WG+ + ++  RW+IGNG +I+IF+D WL       P+        S +  L+K 
Sbjct: 943  WR-SIMWGRQVIKKGMRWRIGNGKKIAIFSDNWLPRPETFRPIFPLSLPVSSVVADLIKA 1002

Query: 75   DGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
            D +WD  K+R+ F + D   IL+IP       DE++
Sbjct: 1003 DNQWDEIKLRQHFLDVDTAEILKIPLPAEKAEDEVL 1037

BLAST of Tan0012198 vs. NCBI nr
Match: XP_030502376.1 (uncharacterized protein LOC115717528 [Cannabis sativa])

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-09
Identity = 34/109 (31.19%), Postives = 56/109 (51.38%), Query Frame = 0

Query: 4   LEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPEL 63
           LE +P     +  +SILWG+DL      WK+ NG  I    D WL     +     +P  
Sbjct: 521 LEAVPGHSPSFSWRSILWGRDLMASGLIWKVVNGYGIQTLGDHWLPNNRFKFFTSNNPPP 580

Query: 64  AQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIVLE 113
           +  ++   + + G WDV K++ CF E  V +IL +P +G + +D+++ E
Sbjct: 581 SSHSLSFFITDSGTWDVGKLQSCFDESMVHDILAVPVFGSYGHDKLIWE 629

BLAST of Tan0012198 vs. NCBI nr
Match: XP_030494695.1 (uncharacterized protein LOC115710475 [Cannabis sativa])

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-09
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 0

Query: 14  YWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ-STIRSLL 73
           Y   S+LWG+DL      WK+GNGC I  F DPW+   G + P + S +L     +   +
Sbjct: 444 YTWSSLLWGRDLLIRGLLWKVGNGCSIRTFQDPWIL--GIKFPCLRSNDLPPVDKVSFFI 503

Query: 74  KEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
             +G WD  K+ + F +  V +IL++P  G+H  D I+
Sbjct: 504 DNNGFWDRYKLHQYFDDYSVLSILKVPIGGLHKADSII 539

BLAST of Tan0012198 vs. NCBI nr
Match: PKA49974.1 (Putative ribonuclease H protein [Apostasia shenzhenica])

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-09
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 0

Query: 15  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVE-GRQHPMMVSPELAQSTIRSLLK 74
           WR SILWG+DL +   RW+IGNG  + +F DPWL      Q     +P LA + I  LL 
Sbjct: 332 WR-SILWGRDLLKLGLRWRIGNGNSVRVFGDPWLPRPISFQAITSPNPNLAATRIVELLT 391

Query: 75  EDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
           EDG W+ +KI       D   IL++P      +D ++
Sbjct: 392 EDGSWNWEKINSILWSIDYHLILEMPPCSTKFDDALI 427

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.7e-13
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 0

Query: 6   KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ 65
           KL       WR SILWG+DLF++ YRWK+GNG  I++ +DPWL  +G   P+     +  
Sbjct: 564 KLGARPSYAWR-SILWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRN 623

Query: 66  STIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
            ++  L++  G WD  K+R  F   +   ILQ P      +DEI+
Sbjct: 624 FSVAWLMEGRGRWDEIKVRESFIVSEADIILQTPLPSQDKDDEII 667

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A803QDR8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 6    KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ 65
            KL       W  S+LWG+DL +    WKIGNGC + IF DPW+       P + SP L  
Sbjct: 907  KLGHSHSYTW-SSLLWGRDLLKHGLVWKIGNGCSVRIFEDPWI-------PDLKSPCLRS 966

Query: 66   S------TIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
            +      T+   +   G W  DK+   F +  + +IL++P  G+H ND +V
Sbjct: 967  NDSPPAETVSFFIDNQGFWSRDKLSHYFDDTSISSILKVPIGGLHRNDTLV 1009

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A803PV88 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-10
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 0

Query: 14  YWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ-STIRSLL 73
           Y   S+LWG+DL +    WKIGNGC +  F DPW  +   + P + S +L    T+   +
Sbjct: 713 YTWSSLLWGRDLLKHGLVWKIGNGCSVRTFEDPW--IPDMKSPCLGSNDLPPVETVDFFI 772

Query: 74  KEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
              G W+ DK+   F    V +IL++P  G+H +D +V
Sbjct: 773 DHQGFWNRDKLNYYFDNLSVSSILRVPIGGLHRDDTLV 808

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A803NFC8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 34/109 (31.19%), Postives = 56/109 (51.38%), Query Frame = 0

Query: 4   LEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPEL 63
           LE +P     +  +SILWG+DL      WK+ NG  I    D WL     +     +P  
Sbjct: 108 LEAVPGHSPSFSWRSILWGRDLMASGLIWKVVNGYGIQTLGDHWLPNNRFKFFTSNNPPP 167

Query: 64  AQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIVLE 113
           +  ++   + + G WDV K++ CF E  V +IL +P +G + +D+++ E
Sbjct: 168 SSHSLSFFITDSGTWDVGKLQSCFDESMVHDILAVPVFGSYGHDKLIWE 216

BLAST of Tan0012198 vs. ExPASy TrEMBL
Match: A0A2I0A354 (Ribonuclease H protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017513 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-09
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 0

Query: 15  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVE-GRQHPMMVSPELAQSTIRSLLK 74
           WR SILWG+DL +   RW+IGNG  + +F DPWL      Q     +P LA + I  LL 
Sbjct: 332 WR-SILWGRDLLKLGLRWRIGNGNSVRVFGDPWLPRPISFQAITSPNPNLAATRIVELLT 391

Query: 75  EDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV 111
           EDG W+ +KI       D   IL++P      +D ++
Sbjct: 392 EDGSWNWEKINSILWSIDYHLILEMPPCSTKFDDALI 427

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022155286.11.6e-1238.10uncharacterized protein LOC111022423 [Momordica charantia][more]
XP_024950112.11.3e-0936.46uncharacterized protein LOC112496847 [Citrus sinensis][more]
XP_030502376.13.7e-0931.19uncharacterized protein LOC115717528 [Cannabis sativa][more]
XP_030494695.14.8e-0935.71uncharacterized protein LOC115710475 [Cannabis sativa][more]
PKA49974.16.3e-0939.18Putative ribonuclease H protein [Apostasia shenzhenica][more]
Match NameE-valueIdentityDescription
A0A6J1DRA07.7e-1338.10uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A803QDR82.5e-1135.14Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PV883.6e-1035.71Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NFC81.8e-0931.19Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2I0A3543.0e-0939.18Ribonuclease H protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017513 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012198.1Tan0012198.1mRNA