Tan0012176 (gene) Snake gourd v1

Overview
NameTan0012176
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReceptor-type tyrosine-protein like
LocationLG06: 1153976 .. 1154532 (+)
RNA-Seq ExpressionTan0012176
SyntenyTan0012176
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAATAGAACCACAGCCCTAGAATCTCTCTCACACTTCATCCACATGGCTGAGTCTTACGAATTTCAGCCACAAGACGAGGCCCAAGCCCTCCTCCGCTCCGGCCAGCGACGGGCGTCTCGCCGGTGGATCCATCTGCGGCGTAAGAAGCTGCCGACGGTCCGACTTGGCGGCGGAAGGGCGCCGCGAACGGTGGCGCTTTGGAGGTCGATTCGAATCAGAAAGTGGCTGATGAAGATCCGATGCGATTGTATGGTGAAGAAGCTGAATCAATTGTTGGGAAAAGACATTGCTGGTTTCGATGCTTTTTTTAAAAGGATTCTGATGGAGATCTCTTTGGCCGTTCCTGTTCTTGGTGCTTCTCTCTCTATTTAAGCTTGCCATTTTTAAGTTTAATTTGAATCCGTAACCTCTGAATCGATAATGTATATTTTACTTTATGTTTAGATTAAGTAGAATGTAAAAATTATTTAGTTTTAATTGTGAATAATTATATATAAATTTCAGTTTCATACCTATGAGTCAGATTTAATAATCATTTGCATTTTAATTTTTG

mRNA sequence

TATAAATAGAACCACAGCCCTAGAATCTCTCTCACACTTCATCCACATGGCTGAGTCTTACGAATTTCAGCCACAAGACGAGGCCCAAGCCCTCCTCCGCTCCGGCCAGCGACGGGCGTCTCGCCGGTGGATCCATCTGCGGCGTAAGAAGCTGCCGACGGTCCGACTTGGCGGCGGAAGGGCGCCGCGAACGGTGGCGCTTTGGAGGTCGATTCGAATCAGAAAGTGGCTGATGAAGATCCGATGCGATTGTATGGTGAAGAAGCTGAATCAATTGTTGGGAAAAGACATTGCTGGTTTCGATGCTTTTTTTAAAAGGATTCTGATGGAGATCTCTTTGGCCGTTCCTGTTCTTGGTGCTTCTCTCTCTATTTAAGCTTGCCATTTTTAAGTTTAATTTGAATCCGTAACCTCTGAATCGATAATGTATATTTTACTTTATGTTTAGATTAAGTAGAATGTAAAAATTATTTAGTTTTAATTGTGAATAATTATATATAAATTTCAGTTTCATACCTATGAGTCAGATTTAATAATCATTTGCATTTTAATTTTTG

Coding sequence (CDS)

ATGGCTGAGTCTTACGAATTTCAGCCACAAGACGAGGCCCAAGCCCTCCTCCGCTCCGGCCAGCGACGGGCGTCTCGCCGGTGGATCCATCTGCGGCGTAAGAAGCTGCCGACGGTCCGACTTGGCGGCGGAAGGGCGCCGCGAACGGTGGCGCTTTGGAGGTCGATTCGAATCAGAAAGTGGCTGATGAAGATCCGATGCGATTGTATGGTGAAGAAGCTGAATCAATTGTTGGGAAAAGACATTGCTGGTTTCGATGCTTTTTTTAAAAGGATTCTGATGGAGATCTCTTTGGCCGTTCCTGTTCTTGGTGCTTCTCTCTCTATTTAA

Protein sequence

MAESYEFQPQDEAQALLRSGQRRASRRWIHLRRKKLPTVRLGGGRAPRTVALWRSIRIRKWLMKIRCDCMVKKLNQLLGKDIAGFDAFFKRILMEISLAVPVLGASLSI
Homology
BLAST of Tan0012176 vs. NCBI nr
Match: KAG6593556.1 (hypothetical protein SDJN03_13032, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 82/115 (71.30%), Postives = 89/115 (77.39%), Query Frame = 0

Query: 1   MAESYEFQPQDEAQALLRSGQRRASRRWIHLRRKKLPTVRLGGGRAPRTVALWRSIRIRK 60
           MA+S+E QP+DEAQ+LL S  RR  RRWIHLRRK+LP VRLGG R PR  A WRSIR RK
Sbjct: 1   MAQSHESQPKDEAQSLLHSSHRRPHRRWIHLRRKRLPIVRLGGERPPRAAAHWRSIRFRK 60

Query: 61  WLMKIRCDCMVKKLNQLLGKDI-------AGFDAFFKRILMEISLAVPVLGASLS 109
           WLMKIRCDC+VKKL QL GK          GFDAF KRILMEISLAVPVLGASL+
Sbjct: 61  WLMKIRCDCLVKKLKQLFGKGTGSGGDGGGGFDAFLKRILMEISLAVPVLGASLA 115

BLAST of Tan0012176 vs. NCBI nr
Match: KAG7013982.1 (hypothetical protein SDJN02_24152, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 77/109 (70.64%), Postives = 84/109 (77.06%), Query Frame = 0

Query: 1   MAESYEFQPQDEAQALLRSGQRRASRRWIHLRRKKLPTVRLGGGRAPRTVALWRSI---R 60
           MA+SYE Q QDEAQ LL SG RR  RRWIHLRRKKL T RLGG R PR   +WRSI   R
Sbjct: 1   MAQSYESQLQDEAQPLLLSGHRRPLRRWIHLRRKKLSTARLGGRRPPRAAVIWRSIRKVR 60

Query: 61  IRKWLMKIRCDCMVKKLNQLLGKDIAGFDAFFKRILMEISLAVPVLGAS 107
           +RKWLMK+RCDC VKK+N+L  KD  GF+ F KRILMEIS AVPVLGAS
Sbjct: 61  MRKWLMKVRCDCKVKKINELFDKDNGGFNGFLKRILMEISSAVPVLGAS 109

BLAST of Tan0012176 vs. NCBI nr
Match: KAG6575440.1 (hypothetical protein SDJN03_26079, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 77/109 (70.64%), Postives = 84/109 (77.06%), Query Frame = 0

Query: 1   MAESYEFQPQDEAQALLRSGQRRASRRWIHLRRKKLPTVRLGGGRAPRTVALWRSI---R 60
           MA+SYE Q QDEAQ LL SG RR  RRWIHLRRKKL T RLGG R PR   +WRSI   R
Sbjct: 1   MAQSYESQLQDEAQPLLLSGHRRPLRRWIHLRRKKLSTARLGGRRPPRAAVIWRSIRKVR 60

Query: 61  IRKWLMKIRCDCMVKKLNQLLGKDIAGFDAFFKRILMEISLAVPVLGAS 107
           +RKWLMK+RCDC VKK+N+L  KD  GF+ F KRILMEIS AVPVLGAS
Sbjct: 61  MRKWLMKVRCDCKVKKMNELFDKDNGGFNGFLKRILMEISSAVPVLGAS 109

BLAST of Tan0012176 vs. NCBI nr
Match: KAA0059393.1 (hypothetical protein E6C27_scaffold242G001190 [Cucumis melo var. makuwa] >TYK03934.1 hypothetical protein E5676_scaffold347G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 7.1e-26
Identity = 72/116 (62.07%), Postives = 85/116 (73.28%), Query Frame = 0

Query: 1   MAESYEFQPQDEAQALLRSGQRRASRRWIHLRRKKLPTVRLGGGRAPRTVALWRS---IR 60
           M ESY+ + QDEA++LLRSG RR SRRWI LRRKKLPT RLGG R PRTVA+WRS   I+
Sbjct: 1   MRESYKLEAQDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTVAIWRSIKEIK 60

Query: 61  IRKW----LMKIRCDCMVKKLNQLLGKDIAGFDAFFKRILMEISLAVPVLGASLSI 110
           +RKW     MK+RC            KDIAGF+AF K+IL+EISLA+P+LG SLSI
Sbjct: 61  MRKWAAMMTMKVRC------------KDIAGFNAFLKKILLEISLAIPLLGVSLSI 104

BLAST of Tan0012176 vs. NCBI nr
Match: KAE8646502.1 (hypothetical protein Csa_015773 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 0

Query: 1   MAE-SYEFQPQDEAQALLRSGQRRASRRWIHLRRKKLPTVRLGGGRAPRTVALWRS---I 60
           MAE SYE + +DEA++LLRSG RR SRRWI LRRKKLPT RLGG R PRT A+WRS   I
Sbjct: 1   MAESSYELEAEDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTAAIWRSIKEI 60

Query: 61  RIRKWLM----KIRCDCMVKKLNQLLGKDIAGFDAFFKRILMEISLAVPVLGASLSI 110
           ++RKW M    K+RC            KDIA F+AF ++IL+EISLA+P+LG  L +
Sbjct: 61  KMRKWAMTMTNKVRC------------KDIASFNAFLRKILLEISLAIPLLGDGLEV 105

BLAST of Tan0012176 vs. ExPASy TrEMBL
Match: A0A5A7UTZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001310 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26
Identity = 72/116 (62.07%), Postives = 85/116 (73.28%), Query Frame = 0

Query: 1   MAESYEFQPQDEAQALLRSGQRRASRRWIHLRRKKLPTVRLGGGRAPRTVALWRS---IR 60
           M ESY+ + QDEA++LLRSG RR SRRWI LRRKKLPT RLGG R PRTVA+WRS   I+
Sbjct: 1   MRESYKLEAQDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTVAIWRSIKEIK 60

Query: 61  IRKW----LMKIRCDCMVKKLNQLLGKDIAGFDAFFKRILMEISLAVPVLGASLSI 110
           +RKW     MK+RC            KDIAGF+AF K+IL+EISLA+P+LG SLSI
Sbjct: 61  MRKWAAMMTMKVRC------------KDIAGFNAFLKKILLEISLAIPLLGVSLSI 104

BLAST of Tan0012176 vs. ExPASy TrEMBL
Match: A0A0A0KCH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448920 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.5e-24
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 0

Query: 1   MAE-SYEFQPQDEAQALLRSGQRRASRRWIHLRRKKLPTVRLGGGRAPRTVALWRS---I 60
           MAE SYE + +DEA++LLRSG RR SRRWI LRRKKLPT RLGG R PRT A+WRS   I
Sbjct: 1   MAESSYELEAEDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTAAIWRSIKEI 60

Query: 61  RIRKWLM----KIRCDCMVKKLNQLLGKDIAGFDAFFKRILMEISLAVPVLGASLSI 110
           ++RKW M    K+RC            KDIA F+AF ++IL+EISLA+P+LG SLSI
Sbjct: 61  KMRKWAMTMTNKVRC------------KDIASFNAFLRKILLEISLAIPLLGVSLSI 105

BLAST of Tan0012176 vs. ExPASy TrEMBL
Match: A0A6J1GVZ8 (uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC111458050 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 0

Query: 1   MAESYEFQPQDEAQALLRSGQRRASRRWIHLRRKKLPTVRLGGGRAPRTVALWRSIR-IR 60
           M + YE   + +  A LR G RR +RR +  RR+++P  RLGG R+ R VA  R +R IR
Sbjct: 1   MGQPYE-PEEGQPGAGLRRGTRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIR 60

Query: 61  KWLMKIRCDCMVKKLNQL---LGKDIAGFDAFFK----RILMEISLAVPVLGASLS 109
              +K++C  MVKK+ +    L KDI    A+ +    R+L+E S A+P+LG SLS
Sbjct: 61  LRWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYARSYQHRLLLETSFAIPILGVSLS 115

BLAST of Tan0012176 vs. ExPASy TrEMBL
Match: A0A1S4CG75 (uncharacterized protein LOC107818456 OS=Nicotiana tabacum OX=4097 GN=LOC107818456 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 0

Query: 25  SRRWIHLRRKKLPTVRLGGGRAPR----TVALWRSIRIRKWLMKIRCDCMVKKLN---QL 84
           SRR I  R+K+LPTVRLGG + PR     V L+R +R+ KWL K+   CM+K+L    Q 
Sbjct: 27  SRRKITFRKKRLPTVRLGGEKNPRRGFSVVKLFRRVRL-KWL-KLHYTCMLKRLKEYYQS 86

Query: 85  LGKDI----AGFDAFFKRILMEISLAVPVLGASLS 109
             KDI       DAF +R+L+E S AVPV+G S +
Sbjct: 87  AVKDIMESGGALDAFQQRLLLETSFAVPVMGLSFN 119

BLAST of Tan0012176 vs. ExPASy TrEMBL
Match: A0A5N6QI76 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003523 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.1e-07
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 0

Query: 25  SRRWIHLRRKKLPTVRLGGGRAPRTVAL---WRSIRIRKWLMKIRCDCMVKKLNQL---L 84
           +R  I LRR+KLPTVRLGG +  R   L   +R +R+R WL K++  CM+KKL +    L
Sbjct: 26  TRLQISLRRRKLPTVRLGGKKPRRGFTLARVFRRLRLR-WL-KLQYTCMLKKLREYYRNL 85

Query: 85  GKDI----AGFDAFFKRILMEISLAVPVLGASLS 109
            KD+    A  + F +R+LME SLAVPVLG S +
Sbjct: 86  VKDMVDAGATLETFHQRVLMEASLAVPVLGVSFN 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6593556.11.1e-3471.30hypothetical protein SDJN03_13032, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7013982.13.0e-3270.64hypothetical protein SDJN02_24152, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6575440.13.0e-3270.64hypothetical protein SDJN03_26079, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0059393.17.1e-2662.07hypothetical protein E6C27_scaffold242G001190 [Cucumis melo var. makuwa] >TYK039... [more]
KAE8646502.12.1e-2257.26hypothetical protein Csa_015773 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5A7UTZ43.4e-2662.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KCH45.5e-2459.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448920 PE=4 SV=1[more]
A0A6J1GVZ81.5e-0841.38uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC1114580... [more]
A0A1S4CG752.1e-0747.37uncharacterized protein LOC107818456 OS=Nicotiana tabacum OX=4097 GN=LOC10781845... [more]
A0A5N6QI766.1e-0747.87Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003523 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34788:SF4F15I1.22coord: 10..108
NoneNo IPR availablePANTHERPTHR34788F15I1.22coord: 10..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012176.1Tan0012176.1mRNA