Tan0011988 (gene) Snake gourd v1

Overview


Name	Tan0011988
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ubiquitin-conjugating enzyme
Location	LG04: 10105377 .. 10108638 (-)
RNA-Seq Expression	Tan0011988
Synteny	Tan0011988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCTCGCCGCGCTAGGTTACGGGTAAGGGATTTCGATCATCTTAATTGTTTGAGTTCTCTTATTTGGTCGCTTTTTAAATTTTGGCTCCGATTCATGGATTACCGTGGTTTTACTGGTCTTTGTTTTCGACGTGGATGTACATGTACCCATACTGAGGTGTTGTTCGCCCTAATTTGTTAGGAATGTAATCTGTTTGTCTGACCGGCAGTTTAGGACGGAGATCTAAGGGTTTTGTTTACGGCGAGGGTACAGGAAAGGTTTTATTGACGTGCAACGAGCTGGCGTTTTAGTTTCGTTGAGGCACGGGTTTGCAGTAGCTAGTGGTTAATTTTCCGGATTGAATTATGTGTCTAAGAATGTTTCTTTGTGGTCTTGTTTGTTCTATAAATGGAATTAAATGGTATTACCTTCCCCGTCCTCTTGGTCCATGTCGACGTAAGCTCTAGACTTTCGTTTCAAACTTGCAATTTTAATTTACTTGAAGAAACGCCCTTGGGGTGGTCCGTTGTTCGTTTCGGTTAGGGTGATATCATGTAAGTCGAGGCGCCTCCTTCTCAATTGGATTGAACTTGTTTCATGTTCATCATCGAATTTTCACTTCGTTAAATTTTGATCTTTTGTATCCTGCATGCTCGAATCCAGCATATTCATTTCTCTGCATCGCCCATGTGCGTTTATGACAAGTGAAGTTAAGATTGTTGTCTTGATTTATTTTCAGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGACTTCAAGAGGCTGCAGCAAGATCCACCTGCCGGTATCAGTGGTGCTCCCCAAGACAATAATATTATGCTATGGAATGCTGTTATATTTGGGTAAGTTGGGAAAATATATTATGACCTCGATCTTTTTTTTTTTTTTTCAGAACTCTTATATATATGCACGATTGCTTCTGTGACTAACTGATGCTATGGTCTCTTACATGTTTTTTTCTTGGCTTTTGCAGGCCAGATGATACACCTTGGGATGGAGGTATTCTCAATTTATGCCTTTCTGGGCCTAAGTGACTTATTAAGAAGACGACAACGTTGTATTAGGATCAAGTTTCCTAATGATTTACTTATATCTTGTTTGATGATTTTACTTTGTTTTTCTGTTCAAAACTATGACTAATGATGATGCATTTCCACTGCAATAAAATAACAGTATCACTCCTTTCAGTTATGTAGACATATGTGTTGGCTATAAAGCTATTAGCTTAGTTAAGTTAAATTAATTTGTCAATTTTAAAATTATCTGGTTCTGATTTGCATGATATTTTGTATTTCATGTTCATGGTCTTCTTTTTAAGCTCTTTCTGCTATTTGGATATGGGTTGTGTGTTGTATTTTCTGGTGGAGAACTCAAGAATAATTAGAAGTTTCTAAAATTCTGATTATGGTTTCCTGGGACTTTAAATTCAAAATGTCAAGTTGCTTTCATCTCTCCTGGTGCAAGTTGTGGGAATGCATTCTGGAGGCTCCATGTATTCTGATGTTCTTTTCTAAACATTGAAATGGATATTACAATCTTGTTTAATTTTCTGAGAATTTCAATTAATTTTGCATATGATTTTGGTGTTTTTCTTAGATGTTTTTATTTAAGAACTTCTCATGTAGTTTATGAATTGTAATTTGGCTACTCATCTTTTGAGTTGACCAGGTACGTTTAAGCTGACCCTTCAGTTCACCGAGGATTATCCCAATAAGCCACCGACAGTCCGATTTGTGTCTAGAATGTTCCACCCCAATAGTAAGTTCACAATCTCAAGGAACGTGCCCTTTACAAACATTTTATGCTTTATGTAATTCATTCTGTGCCAATTAGAGTTTTTTTTGTAATATCCATTTGGCACTAGGTTTGAGAAGATGCATAGTTCTCCTGTAGGTTTTTTGTCCAGCTACTTTTTGTTTACATAATGTTGCTTATTATGTTTCTATATTGTGTAGCTTATTTTATTGTGTATATTTTATATTGTAAATGTAAAAATCCATCTGCTAACAATATTGTGGCTACTTCATTAAACCTATATATGATCCCGATATGTTATGTTTGATATGTATGGTATGTTTGGCTTGGACCTGGGTGATTTTAATGAGTGAAGGGCAAGAGAGAGAATATAACTATCTTGTAAAACGATGAGGTAAATGTTTATCTTAGGTTACAATGCGAGTTGTGTCAATTTTGTTTTTAATTTTTCTGTACATGTTGCTAAGCCTACATTTTTTTTGCTCGTTTGGTTTCTCCCATCGCCTTCAGTTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCTATTCAGGTACCCACCTAATCAAGTTGCCTTAATAAATGTAAAGGCTAAACATTTATTGCTGTATGATTAATTGCTCTCTTTATCATTTTATGGGTACAAATGAAAAGTATGTAATCATAATCATTAAAAGAAACATGCCACTGCTCCTGTACTATGCCCTATGCTAGAAGTAAAACGCATATGGTTCATGCGTCCCCAGGATGCCTATCATAACATTGGATCTGACTGTGTGAGCGAGCAGTTAGTTGTAACCTGTCCTCACCACTGACCCAGGCCGTAAAAGCCCCATTCTTTTAGTTCTTGTTCTTGATCTCTGAATTTGTGGAAATTTAACAGTTTTGATTATTTTTGATTTATTGATTATTATTATTTTTATATTTAGGATCAAGTTTAAAGAACTAGAATTATTTTGCCTGATAATCTGATTGGAATTTGATCTACTTAAGAAATTGTAGCCATTGTCGTTAATCCATATTTTTTTATGATAATCATACATACCAATAATGTTCGACATTACAAGTATACTACTGCCCACCTAGAAAAGGGAAAAATGAAGGTGGGTATGGAGATAATGAATTATCTGCCGACATATTTGATGTATTATGGAGAATGTAATAATATTGACTGTATTGGACTACTGACTTGTGGAATTCAGAAGTTATATGGCTTGCTCGTGCTTTTCATTGATTCGCAAACTCACTTCTTTGTTGTTTTTTTGATAATTATTTTTTTAATATATCCTTTTTATTCCCATTAATGTTTTTTCTTGTAGTCGTTGCTGTGCGACCCCAATCCAAACTCTCCTGCTAATTCTGAAGCCGCTAGGATGTTTAGCGAGAACAAGCGCGAGTACAACAGGAGAGTGCGTGAGATTGTGGAACAGAGTTGGACTGCTGATTAG

mRNA sequence

AGTTCTCGCCGCGCTAGGTTACGGGTAAGGGATTTCGATCATCTTAATTGTTTGAGTTCTCTTATTTGGTCGCTTTTTAAATTTTGGCTCCGATTCATGGATTACCGTGGTTTTACTGGTCTTTGTTTTCGACGTGGATGTACATGTACCCATACTGAGGTGTTGTTCGCCCTAATTTGTTAGGAATGTAATCTGTTTGTCTGACCGGCAGTTTAGGACGGAGATCTAAGGGTTTTGTTTACGGCGAGGGTACAGGAAAGGTTTTATTGACGTGCAACGAGCTGGCGTTTTAGTTTCGTTGAGGCACGGGTTTGCAGTAGCTAGTGGTTAATTTTCCGGATTGAATTATGTGTCTAAGAATGTTTCTTTGTGGTCTTGTTTGTTCTATAAATGGAATTAAATGGTATTACCTTCCCCGTCCTCTTGGTCCATGTCGACGTAAGCTCTAGACTTTCGTTTCAAACTTGCAATTTTAATTTACTTGAAGAAACGCCCTTGGGGTGGTCCGTTGTTCGTTTCGGTTAGGGTGATATCATGTAAGTCGAGGCGCCTCCTTCTCAATTGGATTGAACTTGTTTCATGTTCATCATCGAATTTTCACTTCGTTAAATTTTGATCTTTTGTATCCTGCATGCTCGAATCCAGCATATTCATTTCTCTGCATCGCCCATGTGCGTTTATGACAAGTGAAGTTAAGATTGTTGTCTTGATTTATTTTCAGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGACTTCAAGAGGCTGCAGCAAGATCCACCTGCCGGTATCAGTGGTGCTCCCCAAGACAATAATATTATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACCCTTCAGTTCACCGAGGATTATCCCAATAAGCCACCGACAGTCCGATTTGTGTCTAGAATGTTCCACCCCAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCTATTCAGTCGTTGCTGTGCGACCCCAATCCAAACTCTCCTGCTAATTCTGAAGCCGCTAGGATGTTTAGCGAGAACAAGCGCGAGTACAACAGGAGAGTGCGTGAGATTGTGGAACAGAGTTGGACTGCTGATTAG

Coding sequence (CDS)

ATGCTCGAATCCAGCATATTCATTTCTCTGCATCGCCCATGTGCGTTTATGACAAGTGAAGTTAAGATTGTTGTCTTGATTTATTTTCAGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGACTTCAAGAGGCTGCAGCAAGATCCACCTGCCGGTATCAGTGGTGCTCCCCAAGACAATAATATTATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACCCTTCAGTTCACCGAGGATTATCCCAATAAGCCACCGACAGTCCGATTTGTGTCTAGAATGTTCCACCCCAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCTATTCAGTCGTTGCTGTGCGACCCCAATCCAAACTCTCCTGCTAATTCTGAAGCCGCTAGGATGTTTAGCGAGAACAAGCGCGAGTACAACAGGAGAGTGCGTGAGATTGTGGAACAGAGTTGGACTGCTGATTAG

Protein sequence

MLESSIFISLHRPCAFMTSEVKIVVLIYFQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD

Homology

[Close]

BLAST of Tan0011988 vs. ExPASy Swiss-Prot
Match: P42745 (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 7.0e-85
Identity = 148/152 (97.37%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 34  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 93
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 94  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 153
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 154 PANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           PANSEAARMFSE+KREYNRRVRE+VEQSWTAD
Sbjct: 121 PANSEAARMFSESKREYNRRVREVVEQSWTAD 152

[Close]

BLAST of Tan0011988 vs. ExPASy Swiss-Prot
Match: P35130 (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa OX=3879 GN=UBC2 PE=2 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 7.0e-85
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 34  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 93
           MSTPARKRLMRDFKRLQ DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1   MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 94  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 153
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 154 PANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           PANSEAARMFSENKREYNRRVRE+VEQSWTAD
Sbjct: 121 PANSEAARMFSENKREYNRRVREVVEQSWTAD 152

[Close]

BLAST of Tan0011988 vs. ExPASy Swiss-Prot
Match: P25866 (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.0e-84
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 34  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 93
           MSTPARKRLMRDFKRLQQDPPAGISGAP DNNI LWNAVIFGPDDTPWDGGTFKLTLQFT
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFT 60

Query: 94  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 153
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 154 PANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           PANSEAARM+SENKREYNR+VRE+VEQSWTAD
Sbjct: 121 PANSEAARMYSENKREYNRKVREVVEQSWTAD 152

[Close]

BLAST of Tan0011988 vs. ExPASy Swiss-Prot
Match: P25865 (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.5e-84
Identity = 146/152 (96.05%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 34  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 93
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 94  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 153
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 154 PANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           PANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct: 121 PANSEAARMYSESKREYNRRVRDVVEQSWTAD 152

[Close]

BLAST of Tan0011988 vs. ExPASy Swiss-Prot
Match: P42746 (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana OX=3702 GN=UBC3 PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.3e-75
Identity = 132/149 (88.59%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 34  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 93
           M+TPA+KRLM DFKRLQ+DPP GISGAPQDNNIM WNA+IFGP+DTPWDGGTFKLTL FT
Sbjct: 1   MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFT 60

Query: 94  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 153
           EDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+S
Sbjct: 61  EDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDS 120

Query: 154 PANSEAARMFSENKREYNRRVREIVEQSW 183
           PAN+EAAR+FSENKREYNR+V EIVEQS+
Sbjct: 121 PANAEAARLFSENKREYNRKVIEIVEQSY 149

[Close]

BLAST of Tan0011988 vs. NCBI nr
Match: KAF3966055.1 (hypothetical protein CMV_009812 [Castanea mollissima])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 27  IYFQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTF 86
           +Y + VRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTF
Sbjct: 31  VYSRAVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTF 90

Query: 87  KLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 146
           KLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL
Sbjct: 91  KLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 150

Query: 147 CDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           CDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 151 CDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 189

[Close]

BLAST of Tan0011988 vs. NCBI nr
Match: KAA0034394.1 (ubiquitin-conjugating enzyme [Cucumis melo var. makuwa] >TYK15527.1 ubiquitin-conjugating enzyme [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 1.8e-85
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 31  PVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTL 90
           PVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTL
Sbjct: 2   PVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTL 61

Query: 91  QFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPN 150
           QFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPN
Sbjct: 62  QFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPN 121

Query: 151 PNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           PNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 122 PNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 156

[Close]

BLAST of Tan0011988 vs. NCBI nr
Match: KAG9459226.1 (hypothetical protein H6P81_003734 [Aristolochia fimbriata])

HSP 1 Score: 326.2 bits (835), Expect = 1.8e-85
Identity = 155/162 (95.68%), Postives = 159/162 (98.15%), Query Frame = 0


Query: 24  VVLIYFQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDG 83
           VV  +++ VRMSTP+RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDG
Sbjct: 18  VVSTFYREVRMSTPSRKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDG 77

Query: 84  GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 143
           GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ
Sbjct: 78  GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 137

Query: 144 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 138 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 179

[Close]

BLAST of Tan0011988 vs. NCBI nr
Match: CBI32005.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 325.5 bits (833), Expect = 3.0e-85
Identity = 156/169 (92.31%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 17  MTSEVKIVVLIYFQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGP 76
           ++  +K    +  Q VRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGP
Sbjct: 23  LSPRIKPTRRVSLQAVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGP 82

Query: 77  DDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVA 136
           DDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVA
Sbjct: 83  DDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVA 142

Query: 137 AILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           AILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 143 AILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 191

[Close]

BLAST of Tan0011988 vs. NCBI nr
Match: KAF6159959.1 (hypothetical protein GIB67_033043 [Kingdonia uniflora])

HSP 1 Score: 325.1 bits (832), Expect = 3.9e-85
Identity = 154/161 (95.65%), Postives = 158/161 (98.14%), Query Frame = 0


Query: 25  VLIYFQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG 84
           VL++ + VRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG
Sbjct: 19  VLLFLEAVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG 78

Query: 85  TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQS 144
           TFKLTLQF EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQS
Sbjct: 79  TFKLTLQFIEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQS 138

Query: 145 LLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           LLCDPNPNSPANSEAARMFSENKREYNRRVR+IVEQSWTAD
Sbjct: 139 LLCDPNPNSPANSEAARMFSENKREYNRRVRDIVEQSWTAD 179

[Close]

BLAST of Tan0011988 vs. ExPASy TrEMBL
Match: A0A0A0KQJ6 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604380 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.6e-86
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 30  QPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLT 89
           +PVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLT
Sbjct: 72  RPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLT 131

Query: 90  LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 149
           LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP
Sbjct: 132 LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 191

Query: 150 NPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           NPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 192 NPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 227

[Close]

BLAST of Tan0011988 vs. ExPASy TrEMBL
Match: A0A5A7ST60 (Ubiquitin-conjugating enzyme OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00190 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.6e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 31  PVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTL 90
           PVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTL
Sbjct: 2   PVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTL 61

Query: 91  QFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPN 150
           QFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPN
Sbjct: 62  QFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPN 121

Query: 151 PNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           PNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 122 PNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 156

[Close]

BLAST of Tan0011988 vs. ExPASy TrEMBL
Match: D7TND2 (UBC core domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_01s0026g01770 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 156/169 (92.31%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 17  MTSEVKIVVLIYFQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGP 76
           ++  +K    +  Q VRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGP
Sbjct: 23  LSPRIKPTRRVSLQAVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGP 82

Query: 77  DDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVA 136
           DDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVA
Sbjct: 83  DDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVA 142

Query: 137 AILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           AILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 143 AILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 191

[Close]

BLAST of Tan0011988 vs. ExPASy TrEMBL
Match: A0A314YV04 (UBC core domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_14578 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 30  QPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLT 89
           Q VRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLT
Sbjct: 66  QAVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLT 125

Query: 90  LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 149
           LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP
Sbjct: 126 LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 185

Query: 150 NPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           NPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 186 NPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 221

[Close]

BLAST of Tan0011988 vs. ExPASy TrEMBL
Match: A0A7J7MYC2 (UBC core domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_033043 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 154/161 (95.65%), Postives = 158/161 (98.14%), Query Frame = 0


Query: 25  VLIYFQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG 84
           VL++ + VRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG
Sbjct: 19  VLLFLEAVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG 78

Query: 85  TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQS 144
           TFKLTLQF EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQS
Sbjct: 79  TFKLTLQFIEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQS 138

Query: 145 LLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           LLCDPNPNSPANSEAARMFSENKREYNRRVR+IVEQSWTAD
Sbjct: 139 LLCDPNPNSPANSEAARMFSENKREYNRRVRDIVEQSWTAD 179

[Close]

BLAST of Tan0011988 vs. TAIR 10
Match: AT2G02760.1 (ubiquiting-conjugating enzyme 2 )

HSP 1 Score: 314.7 bits (805), Expect = 5.0e-86
Identity = 148/152 (97.37%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 34  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 93
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 94  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 153
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 154 PANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           PANSEAARMFSE+KREYNRRVRE+VEQSWTAD
Sbjct: 121 PANSEAARMFSESKREYNRRVREVVEQSWTAD 152

[Close]

BLAST of Tan0011988 vs. TAIR 10
Match: AT1G14400.1 (ubiquitin carrier protein 1 )

HSP 1 Score: 312.4 bits (799), Expect = 2.5e-85
Identity = 146/152 (96.05%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 34  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 93
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 94  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 153
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 154 PANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           PANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct: 121 PANSEAARMYSESKREYNRRVRDVVEQSWTAD 152

[Close]

BLAST of Tan0011988 vs. TAIR 10
Match: AT1G14400.2 (ubiquitin carrier protein 1 )

HSP 1 Score: 312.4 bits (799), Expect = 2.5e-85
Identity = 146/152 (96.05%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 34  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 93
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 94  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 153
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 154 PANSEAARMFSENKREYNRRVREIVEQSWTAD 186
           PANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct: 121 PANSEAARMYSESKREYNRRVRDVVEQSWTAD 152

[Close]

BLAST of Tan0011988 vs. TAIR 10
Match: AT5G62540.1 (ubiquitin-conjugating enzyme 3 )

HSP 1 Score: 283.9 bits (725), Expect = 9.4e-77
Identity = 132/149 (88.59%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 34  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 93
           M+TPA+KRLM DFKRLQ+DPP GISGAPQDNNIM WNA+IFGP+DTPWDGGTFKLTL FT
Sbjct: 1   MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFT 60

Query: 94  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 153
           EDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+S
Sbjct: 61  EDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDS 120

Query: 154 PANSEAARMFSENKREYNRRVREIVEQSW 183
           PAN+EAAR+FSENKREYNR+V EIVEQS+
Sbjct: 121 PANAEAARLFSENKREYNRKVIEIVEQSY 149

[Close]

BLAST of Tan0011988 vs. TAIR 10
Match: AT4G27960.1 (ubiquitin conjugating enzyme 9 )

HSP 1 Score: 145.6 bits (366), Expect = 4.0e-35
Identity = 67/146 (45.89%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 38  ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 97
           A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP
Sbjct: 2   ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYP 61

Query: 98  NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 157
            KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   
Sbjct: 62  FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121

Query: 158 EAARMFSENKREYNRRVREIVEQSWT 184
           E A M+  +K +Y     E   ++WT
Sbjct: 122 EIAHMYKTDKNKY-----ESTARTWT 142

The following BLAST results are available for this feature:

BLAST of Tan0011988 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42745	7.0e-85	97.37	Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 S...	[more]
P35130	7.0e-85	97.37	Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa OX=3879 GN=UBC2 PE=2 SV=1	[more]
P25866	2.0e-84	96.71	Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1	[more]
P25865	3.5e-84	96.05	Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 S...	[more]
P42746	1.3e-75	88.59	Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana OX=3702 GN=UBC3 PE=2 S...	[more]

BLAST of Tan0011988 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3966055.1	1.4e-85	97.48	hypothetical protein CMV_009812 [Castanea mollissima]	[more]
KAA0034394.1	1.8e-85	100.00	ubiquitin-conjugating enzyme [Cucumis melo var. makuwa] >TYK15527.1 ubiquitin-co...	[more]
KAG9459226.1	1.8e-85	95.68	hypothetical protein H6P81_003734 [Aristolochia fimbriata]	[more]
CBI32005.3	3.0e-85	92.31	unnamed protein product, partial [Vitis vinifera]	[more]
KAF6159959.1	3.9e-85	95.65	hypothetical protein GIB67_033043 [Kingdonia uniflora]	[more]

BLAST of Tan0011988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQJ6	6.6e-86	99.36	UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604380 PE...	[more]
A0A5A7ST60	8.6e-86	100.00	Ubiquitin-conjugating enzyme OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
D7TND2	1.5e-85	92.31	UBC core domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_01s0026g017...	[more]
A0A314YV04	1.9e-85	99.36	UBC core domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558...	[more]
A0A7J7MYC2	1.9e-85	95.65	UBC core domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_03304...	[more]

BLAST of Tan0011988 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02760.1	5.0e-86	97.37	ubiquiting-conjugating enzyme 2	[more]
AT1G14400.1	2.5e-85	96.05	ubiquitin carrier protein 1	[more]
AT1G14400.2	2.5e-85	96.05	ubiquitin carrier protein 1	[more]
AT5G62540.1	9.4e-77	88.59	ubiquitin-conjugating enzyme 3	[more]
AT4G27960.1	4.0e-35	45.89	ubiquitin conjugating enzyme 9	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 40..183 e-value: 5.4E-69 score: 245.2
None	No IPR available	PANTHER	PTHR24067	UBIQUITIN-CONJUGATING ENZYME E2	coord: 24..185
None	No IPR available	PANTHER	PTHR24067:SF319	UBIQUITIN-CONJUGATING ENZYME E2 2	coord: 24..185
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 32..181 e-value: 8.6E-68 score: 228.8
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 28..183
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 41..177 e-value: 1.7E-52 score: 176.8
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 37..183 score: 60.566891
IPR000608	Ubiquitin-conjugating enzyme E2	CDD	cd00195	UBCc	coord: 40..178 e-value: 2.6572E-74 score: 217.84
IPR023313	Ubiquitin-conjugating enzyme, active site	PROSITE	PS00183	UBC_1	coord: 110..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011988.1	Tan0011988.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0016574	histone ubiquitination
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0061631	ubiquitin conjugating enzyme activity