Tan0011954 (gene) Snake gourd v1

Overview


Name	Tan0011954
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG01: 99145911 .. 99146276 (-)
RNA-Seq Expression	Tan0011954
Synteny	Tan0011954

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGCTCAATAATAGCTTTACTAGCTTCCGAAAAATTAGTGGGAGATAACTTCCAAACATGGAAGAATAATATCAACACGATCTTAGTAACTGACGACCTGAAGTTCGTGCTTACTGAGGAATGTCCTCAATTACCGAGCTCGACTGCATCACGAAGTGTTCGTGATGCTTACGATCGATGGATCAGGGCCAATGAAAAGGCCAAGGTCTACATAATTGTCAGCTTGTCTGAAGTCTTGGCAAAGAAGCATGAGTTGATGGTCACCGCTAAGAAGATCATGGATTCGTTGCAGGAATGTTTGGACAACAGTCCTTTCAGGTCAGGCACGATTCGATCAAACACGTCTTCAACGCACGGATGA

mRNA sequence

ATGTCTAGCTCAATAATAGCTTTACTAGCTTCCGAAAAATTAGTGGGAGATAACTTCCAAACATGGAAGAATAATATCAACACGATCTTAGTAACTGACGACCTGAAGTTCGTGCTTACTGAGGAATGTCCTCAATTACCGAGCTCGACTGCATCACGAAGTGTTCGTGATGCTTACGATCGATGGATCAGGGCCAATGAAAAGGCCAAGGTCTACATAATTGTCAGCTTGTCTGAAGTCTTGGCAAAGAAGCATGAGTTGATGGTCACCGCTAAGAAGATCATGGATTCGTTGCAGGAATGTTTGGACAACAGTCCTTTCAGGTCAGGCACGATTCGATCAAACACGTCTTCAACGCACGGATGA

Coding sequence (CDS)

ATGTCTAGCTCAATAATAGCTTTACTAGCTTCCGAAAAATTAGTGGGAGATAACTTCCAAACATGGAAGAATAATATCAACACGATCTTAGTAACTGACGACCTGAAGTTCGTGCTTACTGAGGAATGTCCTCAATTACCGAGCTCGACTGCATCACGAAGTGTTCGTGATGCTTACGATCGATGGATCAGGGCCAATGAAAAGGCCAAGGTCTACATAATTGTCAGCTTGTCTGAAGTCTTGGCAAAGAAGCATGAGTTGATGGTCACCGCTAAGAAGATCATGGATTCGTTGCAGGAATGTTTGGACAACAGTCCTTTCAGGTCAGGCACGATTCGATCAAACACGTCTTCAACGCACGGATGA

Protein sequence

MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYDRWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSLQECLDNSPFRSGTIRSNTSSTHG

Homology

[Close]

BLAST of Tan0011954 vs. NCBI nr
Match: XP_038882358.1 (uncharacterized protein LOC120073622 [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 69/100 (69.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
           M+SSII LL SEKL GDN+  WK+N+NTILV DDL+FVLTEECPQ P+S A+R+VR+AYD
Sbjct: 1   MNSSIIQLLTSEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPTSNANRTVREAYD 60

Query: 61  RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSLQE 101
           RW++ANEKA++YI+ S+S+VLAKKHE + TAK+I+DSL+E
Sbjct: 61  RWVKANEKARIYILASMSDVLAKKHESLATAKEIIDSLRE 100

[Close]

BLAST of Tan0011954 vs. NCBI nr
Match: KAA0046201.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 69/98 (70.41%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1  MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
          M++SI+ LLAS+KL GDN+ TWK N+NTILV +DL+FVLTEECPQ P+STA+R+VR+AYD
Sbjct: 1  MNNSIVQLLASQKLNGDNYTTWKPNLNTILVVNDLRFVLTEECPQAPASTANRNVREAYD 60

Query: 61 RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSL 99
          RW++ANEKA+VYII ++S+VLAKKHE + TAK+IMDSL
Sbjct: 61 RWVKANEKARVYIIANMSDVLAKKHESLATAKEIMDSL 98

[Close]

BLAST of Tan0011954 vs. NCBI nr
Match: XP_022157844.1 (uncharacterized protein LOC111024457 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 67/99 (67.68%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
           M+SSI+ LLASEKL G N+ TWKNN+NTILV DDL+FVLTEECPQ P++ A+R+VR+A+D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPATNANRNVREAFD 60

Query: 61  RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSLQ 100
           RW++AN+KA+VYI+ S+++VLAKKHE ++TAK+IMDSL+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0011954 vs. NCBI nr
Match: KAA0035676.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-31
Identity = 67/99 (67.68%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
           M+SSI+ LLAS+KL GDN+ TWK+N+NTILV DDL+F+LTEECPQ P+S A+R+ R+AYD
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSLQ 100
           RWI+ANEKA+VYI+ S+S+VLAKKHE + T K+I+DSL+
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLK 99

[Close]

BLAST of Tan0011954 vs. NCBI nr
Match: XP_038891685.1 (uncharacterized protein LOC120081079 [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 68/100 (68.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
           M+S II LLASEKL GDN+  WK+N+NTIL+ DDL+FVL+EECPQ P+S A+R+VR+AYD
Sbjct: 1   MNSLIIQLLASEKLNGDNYSAWKSNLNTILIVDDLRFVLSEECPQAPASNANRTVREAYD 60

Query: 61  RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSLQE 101
           RW++ANEKA VYI+ S+S+VLAKKHE + TAK+I+DSL+E
Sbjct: 61  RWVKANEKACVYILASMSDVLAKKHESLATAKEIIDSLRE 100

[Close]

BLAST of Tan0011954 vs. ExPASy TrEMBL
Match: A0A5A7TXW7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00290 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 69/98 (70.41%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1  MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
          M++SI+ LLAS+KL GDN+ TWK N+NTILV +DL+FVLTEECPQ P+STA+R+VR+AYD
Sbjct: 1  MNNSIVQLLASQKLNGDNYTTWKPNLNTILVVNDLRFVLTEECPQAPASTANRNVREAYD 60

Query: 61 RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSL 99
          RW++ANEKA+VYII ++S+VLAKKHE + TAK+IMDSL
Sbjct: 61 RWVKANEKARVYIIANMSDVLAKKHESLATAKEIMDSL 98

[Close]

BLAST of Tan0011954 vs. ExPASy TrEMBL
Match: A0A6J1DXQ5 (uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024457 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.1e-32
Identity = 67/99 (67.68%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
           M+SSI+ LLASEKL G N+ TWKNN+NTILV DDL+FVLTEECPQ P++ A+R+VR+A+D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPATNANRNVREAFD 60

Query: 61  RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSLQ 100
           RW++AN+KA+VYI+ S+++VLAKKHE ++TAK+IMDSL+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0011954 vs. ExPASy TrEMBL
Match: A0A5A7T0E9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00680 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.9e-32
Identity = 67/99 (67.68%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
           M+SSI+ LLAS+KL GDN+ TWK+N+NTILV DDL+F+LTEECPQ P+S A+R+ R+AYD
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSLQ 100
           RWI+ANEKA+VYI+ S+S+VLAKKHE + T K+I+DSL+
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLK 99

[Close]

BLAST of Tan0011954 vs. ExPASy TrEMBL
Match: A0A6J1DUZ9 (uncharacterized protein LOC111024294 OS=Momordica charantia OX=3673 GN=LOC111024294 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 67/99 (67.68%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
           M+SSI+ LLASEKL G N+ TWKNN+NTILV DDL+FVLTEECPQ P+  A+R+VR+A+D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLQFVLTEECPQTPAENANRNVREAFD 60

Query: 61  RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSLQ 100
           RW++AN+KA+VYI+ S+++VLAKKHE ++TAK+IMDSL+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLK 99

[Close]

BLAST of Tan0011954 vs. ExPASy TrEMBL
Match: A0A5A7TWX1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001820 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.4e-31
Identity = 69/99 (69.70%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1   MSSSIIALLASEKLVGDNFQTWKNNINTILVTDDLKFVLTEECPQLPSSTASRSVRDAYD 60
           M+S I+ LLASEKL  DN+ TWK+N+NTILV DDL+FVLTEECPQ P+S A+R+ R+AYD
Sbjct: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPASNANRTSREAYD 60

Query: 61  RWIRANEKAKVYIIVSLSEVLAKKHELMVTAKKIMDSLQ 100
           RWI+ANEKA+VYI+ S+S+VLAKKHE + TAK+IMDSL+
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLK 99

The following BLAST results are available for this feature:

BLAST of Tan0011954 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011954 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882358.1	1.1e-32	69.00	uncharacterized protein LOC120073622 [Benincasa hispida]	[more]
KAA0046201.1	3.3e-32	70.41	gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis ...	[more]
XP_022157844.1	1.3e-31	67.68	uncharacterized protein LOC111024457 [Momordica charantia]	[more]
KAA0035676.1	1.6e-31	67.68	gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis ...	[more]
XP_038891685.1	2.1e-31	68.00	uncharacterized protein LOC120081079 [Benincasa hispida]	[more]

BLAST of Tan0011954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW7	1.6e-32	70.41	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G0029...	[more]
A0A6J1DXQ5	6.1e-32	67.68	uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7T0E9	7.9e-32	67.68	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0068...	[more]
A0A6J1DUZ9	1.0e-31	67.68	uncharacterized protein LOC111024294 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7TWX1	1.4e-31	69.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G0018...	[more]

BLAST of Tan0011954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 7..102
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 7..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011954.1	Tan0011954.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding