Tan0011933 (gene) Snake gourd v1

Overview


Name	Tan0011933
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Eukaryotic translation initiation factor 4C
Location	LG05: 7727661 .. 7729785 (+)
RNA-Seq Expression	Tan0011933
Synteny	Tan0011933

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACAATTTCCTATATTTAATATTGGTTCGGGGCACCGACTATGACCAAGCTTCTTCGGAATTCGTATACATAACGAAAACGCAACCTAGGGCACCTATTCTTTGAGTTTTTGCCTTCATTTCCACCGCTTTCTGCTTCTGCTTCGCATTCTCTTCTTTGGTAAAGGTAGGCAAGTACTGTTATTGGAGCACTTTTTTCTTCATTCCTTATATTCATTAAGGTTAACATCAAATTTTTAGTCGAGTATTTGTTTCGATGTTGTGCGGCTGATTCTTTTCTGTTCGTTTATTATTATTTTTTTTTACCACGGATTTGCTGGATTTATTAAGTTTTGCCGATAATCGTTTAGGTGTTCTTCTCTCTATGCAATTGAACAGTTTCATGTTTTCTATTAGATGGAGATCGTTGATTTTAGATTCTAGATTTTCTCTTTTTTATGGATGAATTCTTCGTTTTTCTTTCTTTTTTTACTCTTTTCTGATTCTGGGAAGGATATCGATTTTGTAACTCAATTATTTAGGCCCATCAGATAACCATTTGTTTTTTTCACTATTTCTCTTCATCTTTCCTAGTGTGATTTTCATTTTCATAAGTAACCATTTGAGTTTATAGCTAAATTTAAAAAACGAAACGGGTATTTGAAAACTATTTTTTTAGGTTCCGTTTGATAACACTATAAATACTAATTTCACTCTTTTAGATGTATTTTAAAAAACCAAGTCAAAATTTGAAAACTAAAAAAAAAATCCAAAAACATGTTTTTATTTTTGAAATTTGGCTAAGAATTCAAGCCTTTTCTTAAGAAAGGCATGAACCACGGTAGGAAAGATGATCATGGTAGGAGAATGGTGAGAAAATAATTACAAATTTCAAAAATCAAAAAACAAAAACCAAATAGTTATCGGGACCTTAGTTTTTTAAATTTAGCTTGGTTTTTTAAAACATAGGTAAAAAGCAGATAAGAAAACATTGAAACTCATGAGTGGAAGTAGTATTTTAGACTTAATTTTTAAAAACTAAAAATCAAATGGTTATCAAACGAGACCTCAACTATGGAGGGTTGACTGCAGTTTTCTAAGGGCATACATGAATGTTTGATGTGCAACTTGCAAGTGATAAATATTTGATGTGCTTGATTTGTTTTGTATTTTTCTTGCTCTGTATAACTAGATGCAAGTCGTATGCTTGAGATTATTATTTAGGTAACCTGATTATATTAAGAGGGCAAGATTTGAATTGTGTGAGGCCCTCTGTATGTTCTTGGTAATTTGGTATCTCGATTACTCATTGCATTTCAAATGTATGACAGAAACAGAAAACATGCCAAAGAATAAAGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATCAGGGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTTGTTGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTTCCTGATAGCACCCGTCTCAATGAGGGCATCGCTGGTGGTATCGATGATGAGGATGATGGTGGGGTTGATGATTATCTTGAGTTTGAGGATGAAGATATTGATAAGATTTAGACTTTTGAGTGACTTTTTCATCTATGGAGTTTAGTGTAACTGATGAGAGATTATGGATGCTTCATAATATGGATTAGCTCCATAGTTATGAAGGGGTGGAGCCAAGAACAAGGGGCAAAGAAATGTGCAGAAATACTTGAATTTTAAAGCTTTTTCCAGTTTGTCTCCCTTTCATGTTTAGAGTTAGATTATATATATATAACGTTTGACCGCAAAATTTACACCCTGAAATAATTTCTGACTCCGCCTTTATAGTCTGTATTTCTGCTCTGTTGCTGAATTGTTGTTTGTTTCATAAAATCTGATACTGATATATAAATGCGTAGTTAACTTTGCCTTCCATTTTTGGCGAAGGGGATTCTCAAA

mRNA sequence

CGACAATTTCCTATATTTAATATTGGTTCGGGGCACCGACTATGACCAAGCTTCTTCGGAATTCGTATACATAACGAAAACGCAACCTAGGGCACCTATTCTTTGAGTTTTTGCCTTCATTTCCACCGCTTTCTGCTTCTGCTTCGCATTCTCTTCTTTGGTAAAGAAACAGAAAACATGCCAAAGAATAAAGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATCAGGGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTTGTTGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTTCCTGATAGCACCCGTCTCAATGAGGGCATCGCTGGTGGTATCGATGATGAGGATGATGGTGGGGTTGATGATTATCTTGAGTTTGAGGATGAAGATATTGATAAGATTTAGACTTTTGAGTGACTTTTTCATCTATGGAGTTTAGTGTAACTGATGAGAGATTATGGATGCTTCATAATATGGATTAGCTCCATAGTTATGAAGGGGTGGAGCCAAGAACAAGGGGCAAAGAAATGTGCAGAAATACTTGAATTTTAAAGCTTTTTCCAGTTTGTCTCCCTTTCATGTTTAGAGTTAGATTATATATATATAACGTTTGACCGCAAAATTTACACCCTGAAATAATTTCTGACTCCGCCTTTATAGTCTGTATTTCTGCTCTGTTGCTGAATTGTTGTTTGTTTCATAAAATCTGATACTGATATATAAATGCGTAGTTAACTTTGCCTTCCATTTTTGGCGAAGGGGATTCTCAAA

Coding sequence (CDS)

ATGCCAAAGAATAAAGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATCAGGGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTTGTTGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTTCCTGATAGCACCCGTCTCAATGAGGGCATCGCTGGTGGTATCGATGATGAGGATGATGGTGGGGTTGATGATTATCTTGAGTTTGAGGATGAAGATATTGATAAGATTTAG

Protein sequence

MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIAGGIDDEDDGGVDDYLEFEDEDIDKI

Homology

[Close]

BLAST of Tan0011933 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 261.5 bits (667), Expect = 5.5e-69
Identity = 134/146 (91.78%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGI- 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELPD+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 AGGIDDEDDGGVDDYLEFEDEDIDKI 146
           AGG+D+E D   +DY+EFEDEDIDKI
Sbjct: 121 AGGLDEEMD-TANDYIEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 8.2e-65
Identity = 124/146 (84.93%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPD+ RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 GGIDDEDDG-GVDDYLEFEDEDIDKI 146
             +D  ++G G  DY++FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of Tan0011933 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 105/145 (72.41%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELP+  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Tan0011933 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 105/145 (72.41%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELP+  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Tan0011933 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 105/145 (72.41%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELP+  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Tan0011933 vs. NCBI nr
Match: XP_022145199.1 (eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022956095.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022979975.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_022979976.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_023527417.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_023527418.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_038902096.1 eukaryotic translation initiation factor 1A [Benincasa hispida] >XP_038902102.1 eukaryotic translation initiation factor 1A [Benincasa hispida])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP+STRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. NCBI nr
Match: XP_008457652.1 (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >XP_008457653.1 PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >KAA0045698.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 287.3 bits (734), Expect = 7.1e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP+STRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. NCBI nr
Match: KAG6570922.1 (hypothetical protein SDJN03_29837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.3 bits (734), Expect = 7.1e-74
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 204 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 263

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP++TRLNEGIA
Sbjct: 264 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 323

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGGVDDYLEFEDEDIDKI
Sbjct: 324 GGIDDEDDGGVDDYLEFEDEDIDKI 348

[Close]

BLAST of Tan0011933 vs. NCBI nr
Match: XP_022944639.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022944641.1 eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022944725.1 eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022986398.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_022986399.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023513346.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >XP_023513347.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 7.1e-74
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP++TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGGVDDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. NCBI nr
Match: XP_022140781.1 (eukaryotic translation initiation factor 1A-like [Momordica charantia])

HSP 1 Score: 285.0 bits (728), Expect = 3.5e-73
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP+STRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDD G DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDAGGDDYLEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. ExPASy TrEMBL
Match: A0A6J1IS99 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111479507 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP+STRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. ExPASy TrEMBL
Match: A0A6J1GY26 (Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC111457892 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP+STRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. ExPASy TrEMBL
Match: A0A6J1CUI5 (Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LOC111014705 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP+STRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. ExPASy TrEMBL
Match: A0A6J1JGD8 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111484147 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.5e-74
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP++TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGGVDDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. ExPASy TrEMBL
Match: A0A1S3C6N4 (Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103497302 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.5e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELP+STRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of Tan0011933 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 267.7 bits (683), Expect = 5.5e-72
Identity = 130/145 (89.66%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           G ++D+DD   DDY+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]

BLAST of Tan0011933 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 261.5 bits (667), Expect = 3.9e-70
Identity = 128/145 (88.28%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELP++TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           G +DD+DD   +DY+EFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of Tan0011933 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 261.5 bits (667), Expect = 3.9e-70
Identity = 128/145 (88.28%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELP++TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           G +DD+DD   +DY+EFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of Tan0011933 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 242.7 bits (618), Expect = 1.9e-64
Identity = 117/128 (91.41%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELP++TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDD 129
           G +DD+DD
Sbjct: 121 GDLDDDDD 128

The following BLAST results are available for this feature:

BLAST of Tan0011933 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	5.5e-69	91.78	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	8.2e-65	84.93	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	6.8e-51	72.41	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	6.8e-51	72.41	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	6.8e-51	72.41	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of Tan0011933 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145199.1	3.2e-74	98.62	eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094....	[more]
XP_008457652.1	7.1e-74	98.62	PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >XP_008457...	[more]
KAG6570922.1	7.1e-74	97.93	hypothetical protein SDJN03_29837, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022944639.1	7.1e-74	97.93	eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022944...	[more]
XP_022140781.1	3.5e-73	97.93	eukaryotic translation initiation factor 1A-like [Momordica charantia]	[more]

BLAST of Tan0011933 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IS99	1.6e-74	98.62	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GY26	1.6e-74	98.62	Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1CUI5	1.6e-74	98.62	Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1JGD8	3.5e-74	97.93	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3C6N4	3.5e-74	98.62	Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103497...	[more]

BLAST of Tan0011933 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	5.5e-72	89.66	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	3.9e-70	88.28	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	3.9e-70	88.28	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	1.9e-64	91.41	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 28..110 e-value: 7.0E-49 score: 178.4
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAM	TIGR00523	TIGR00523	coord: 14..110 e-value: 1.2E-34 score: 116.2
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 1..145
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 16..110 score: 18.345238
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 33..109 e-value: 7.60985E-42 score: 131.877
None	No IPR available	GENE3D	2.40.50.140		coord: 2..145 e-value: 1.3E-57 score: 195.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR21668:SF20	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A	coord: 1..145
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 32..93 e-value: 4.8E-22 score: 77.6
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 22..96 score: 31.623802
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 41..63
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011933.1	Tan0011933.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding