Tan0011879 (gene) Snake gourd v1

Overview
NameTan0011879
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTranscription factor GTE9 isoform X4
LocationLG06: 1867060 .. 1867626 (-)
RNA-Seq ExpressionTan0011879
SyntenyTan0011879
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTTTAAGGAAAGTGAATTCTTCGAAGACGAGTAGCCTTGTTTGCGAAAGATTAGCGAAGGCGCCGAGGATATTGATGAAAGAGAGTTCGGCAAAAACTCGGCGAGTTGCTGGTTTGGCAGTACCGAAGAAGAAGAAGGAGGCGAGTTCTCCTCCGATTATGAAAGAATTACCTCGGCGAGTTAATGTCGGCGATTTGGAAAATTTGGCGGGAAAGACGAGGAGGAGCAAGGAAATTACTACTACGGCGGAATCGGCGACGATCGTAGCAACACCGTGGACTCCGCCGTCAATGAGCGGAGATTCTGAGCGAGTAACAATACTGAAGAGTAGGTATGCGGATACGATAATGAAAGCACAGCGGCAACTTTTCGGCGAGGCTGCCGGAACGAAACAGAAACAAACGACGGAGGAACTGAGACGAGCGGCTCGAGAAGCTTTGGAGAAGGTGGAGTGGAGCGTTGAAGTGGAGGATAGCCATAAATCGGTGAAGGATTTGGAGCGGCTCTGTGGTTGGCCGATATCCTACCATGGCGGATTTTTTAACAGCGCTTTGTATTAG

mRNA sequence

ATGAAGGCTTTAAGGAAAGTGAATTCTTCGAAGACGAGTAGCCTTGTTTGCGAAAGATTAGCGAAGGCGCCGAGGATATTGATGAAAGAGAGTTCGGCAAAAACTCGGCGAGTTGCTGGTTTGGCAGTACCGAAGAAGAAGAAGGAGGCGAGTTCTCCTCCGATTATGAAAGAATTACCTCGGCGAGTTAATGTCGGCGATTTGGAAAATTTGGCGGGAAAGACGAGGAGGAGCAAGGAAATTACTACTACGGCGGAATCGGCGACGATCGTAGCAACACCGTGGACTCCGCCGTCAATGAGCGGAGATTCTGAGCGAGTAACAATACTGAAGAGTAGGTATGCGGATACGATAATGAAAGCACAGCGGCAACTTTTCGGCGAGGCTGCCGGAACGAAACAGAAACAAACGACGGAGGAACTGAGACGAGCGGCTCGAGAAGCTTTGGAGAAGGTGGAGTGGAGCGTTGAAGTGGAGGATAGCCATAAATCGGTGAAGGATTTGGAGCGGCTCTGTGGTTGGCCGATATCCTACCATGGCGGATTTTTTAACAGCGCTTTGTATTAG

Coding sequence (CDS)

ATGAAGGCTTTAAGGAAAGTGAATTCTTCGAAGACGAGTAGCCTTGTTTGCGAAAGATTAGCGAAGGCGCCGAGGATATTGATGAAAGAGAGTTCGGCAAAAACTCGGCGAGTTGCTGGTTTGGCAGTACCGAAGAAGAAGAAGGAGGCGAGTTCTCCTCCGATTATGAAAGAATTACCTCGGCGAGTTAATGTCGGCGATTTGGAAAATTTGGCGGGAAAGACGAGGAGGAGCAAGGAAATTACTACTACGGCGGAATCGGCGACGATCGTAGCAACACCGTGGACTCCGCCGTCAATGAGCGGAGATTCTGAGCGAGTAACAATACTGAAGAGTAGGTATGCGGATACGATAATGAAAGCACAGCGGCAACTTTTCGGCGAGGCTGCCGGAACGAAACAGAAACAAACGACGGAGGAACTGAGACGAGCGGCTCGAGAAGCTTTGGAGAAGGTGGAGTGGAGCGTTGAAGTGGAGGATAGCCATAAATCGGTGAAGGATTTGGAGCGGCTCTGTGGTTGGCCGATATCCTACCATGGCGGATTTTTTAACAGCGCTTTGTATTAG

Protein sequence

MKALRKVNSSKTSSLVCERLAKAPRILMKESSAKTRRVAGLAVPKKKKEASSPPIMKELPRRVNVGDLENLAGKTRRSKEITTTAESATIVATPWTPPSMSGDSERVTILKSRYADTIMKAQRQLFGEAAGTKQKQTTEELRRAAREALEKVEWSVEVEDSHKSVKDLERLCGWPISYHGGFFNSALY
Homology
BLAST of Tan0011879 vs. NCBI nr
Match: KAA0061663.1 (transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 8.5e-11
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 137 TTEELRRAAREALEKVEWSVEVEDSHKSVKDLERLCGWPISYHGGFFNSALY 189
           +TEE+R+AAR ALE++E SV++EDSHKSVKDLERLCGWPI Y GGF N   Y
Sbjct: 138 STEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFKNRMEY 189

BLAST of Tan0011879 vs. NCBI nr
Match: KAG6571342.1 (hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 8.0e-09
Identity = 65/176 (36.93%), Postives = 80/176 (45.45%), Query Frame = 0

Query: 56  MKELPRR---VNVGDLENLAGKTRRSKEITT-----TAESATIVATPWTPPSMSGDSERV 115
           MK +P+    V    L++ A K   S   T+     T    TIV  P TP S SG+  R 
Sbjct: 1   MKGVPKHSLSVRASSLKSKAKKPSLSLPPTSLTKAKTLAPTTIVPRP-TPSSSSGEDNRA 60

Query: 116 TILKSRYADTIMKAQRQLF-----------GEAAG------------------------T 175
            ILK ++A TI KAQR L             EA G                        T
Sbjct: 61  KILKKKFAGTIWKAQRHLSKNRKKVRSEKRREADGKGSEAVDDRRVVPPLAPSLEDDEIT 120

Query: 176 KQKQTTEELRRAAREALEKVEWSVEVEDSHKSVKDLERLCGWPISYHGGFFNSALY 189
             K   EE+R AAR  LE+VE  V V+DSH S+++ ERLCG+PI Y GGF N   Y
Sbjct: 121 MLKVRREEMRAAARRDLEEVERRVVVDDSHASLREYERLCGFPIPYVGGFLNRMHY 175

BLAST of Tan0011879 vs. ExPASy TrEMBL
Match: A0A5D3DC97 (Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00060 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-11
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 137 TTEELRRAAREALEKVEWSVEVEDSHKSVKDLERLCGWPISYHGGFFNSALY 189
           +TEE+R+AAR ALE++E SV++EDSHKSVKDLERLCGWPI Y GGF N   Y
Sbjct: 138 STEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFKNRMEY 189

BLAST of Tan0011879 vs. ExPASy TrEMBL
Match: A0A0A0KGL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-10
Identity = 49/102 (48.04%), Postives = 59/102 (57.84%), Query Frame = 0

Query: 87  SATIVATPWTPPSMSGDSERVTILKSRYADTIMKAQRQLFGEAAGTKQKQTTEELRRAAR 146
           +AT  AT  T P+ + + E    +  R     MK           T    +TEE+RRAAR
Sbjct: 113 TATATATATTTPTTNSNEEPTREVVQRALWRKMK--------LPPTPILTSTEEIRRAAR 172

Query: 147 EALEKVEWSVEVEDSHKSVKDLERLCGWPISYHGGFFNSALY 189
           +ALE +E SV+VEDSHKSVKDLERLCGWPI   GGF N   Y
Sbjct: 173 QALEDLERSVDVEDSHKSVKDLERLCGWPIPSVGGFKNRMEY 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0061663.18.5e-1171.15transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 tran... [more]
KAG6571342.18.0e-0936.93hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5D3DC974.1e-1171.15Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0KGL23.5e-1048.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0011879.1Tan0011879.1mRNA